Wall clock time and date at job start Fri Apr 10 2020 17:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35595 * 117.00543 * 2 1 4 4 N 1.32696 * 120.54026 * 0.26500 * 3 2 1 5 5 C 1.31828 * 120.78553 * 180.30902 * 4 3 2 6 6 N 1.31743 * 121.95961 * 359.70052 * 5 4 3 7 7 C 1.32482 * 121.02292 * 0.02562 * 6 5 4 8 8 C 1.38781 * 119.09053 * 359.97438 * 7 6 5 9 9 N 1.40214 * 120.88660 * 180.02562 * 8 7 6 10 10 C 1.34776 * 119.99737 * 33.77072 * 9 8 7 11 11 O 1.21589 * 120.00318 * 355.92888 * 10 9 8 12 12 N 1.34773 * 119.99710 * 175.65246 * 10 9 8 13 13 C 1.46496 * 120.00085 * 180.27434 * 12 10 9 14 14 C 1.53001 * 109.47244 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47016 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47142 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00120 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00429 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00508 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46679 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46888 * 120.00213 * 20 18 16 23 23 H 1.48496 * 109.47261 * 240.00420 * 20 18 16 24 24 H 1.09003 * 109.47294 * 59.99581 * 1 2 3 25 25 H 1.09000 * 109.47671 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46994 * 299.99863 * 1 2 3 27 27 H 1.07997 * 119.02084 * 179.72712 * 5 4 3 28 28 H 1.08003 * 120.45268 * 180.02562 * 7 6 5 29 29 H 0.96998 * 119.99954 * 213.76590 * 9 8 7 30 30 H 0.97007 * 120.00077 * 0.27247 * 12 10 9 31 31 H 1.09004 * 109.47425 * 299.99962 * 13 12 10 32 32 H 1.09002 * 109.47301 * 59.99889 * 13 12 10 33 33 H 1.08998 * 109.47264 * 299.99745 * 14 13 12 34 34 H 1.08996 * 109.47016 * 60.00554 * 14 13 12 35 35 H 1.09004 * 109.47563 * 300.00172 * 15 14 13 36 36 H 1.09002 * 109.47392 * 60.00239 * 15 14 13 37 37 H 0.97008 * 119.99995 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2081 0.0000 4 7 1.3326 2.3278 0.0053 5 6 1.9261 3.5049 -0.0008 6 7 3.2381 3.6243 -0.0064 7 6 4.0210 2.5556 -0.0067 8 6 3.4414 1.2946 -0.0004 9 7 4.2341 0.1380 0.0001 10 6 5.4180 0.1328 0.6442 11 8 5.8330 1.1518 1.1618 12 7 6.1392 -1.0032 0.7194 13 6 7.4232 -1.0104 1.4246 14 6 8.0313 -2.4130 1.3627 15 6 9.3726 -2.4203 2.0988 16 6 9.9718 -3.8017 2.0372 17 1 9.4486 -4.5950 1.5240 18 6 11.1886 -4.0526 2.6351 19 7 11.8260 -3.0866 3.2595 20 14 11.9311 -5.7651 2.5594 21 1 11.0226 -6.6656 1.8050 22 1 13.2475 -5.7040 1.8749 23 1 12.1136 -6.2869 3.9377 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.3188 4.3979 -0.0007 28 1 5.0955 2.6642 -0.0109 29 1 3.9304 -0.6583 -0.4631 30 1 5.8080 -1.8162 0.3065 31 1 8.1010 -0.2990 0.9528 32 1 7.2674 -0.7280 2.4659 33 1 7.3534 -3.1241 1.8349 34 1 8.1871 -2.6958 0.3216 35 1 10.0503 -1.7093 1.6262 36 1 9.2173 -2.1374 3.1399 37 1 12.6820 -3.2632 3.6805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178213534.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:19 Heat of formation + Delta-G solvation = -49.071776 kcal Electronic energy + Delta-G solvation = -20734.251721 eV Core-core repulsion = 17318.227735 eV Total energy + Delta-G solvation = -3416.023986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.59876 -41.07848 -39.50468 -37.30073 -36.20227 -35.25616 -34.21269 -33.14409 -31.23678 -28.59014 -28.43263 -25.72310 -24.91889 -24.49027 -22.37073 -22.06875 -20.12604 -19.78690 -18.87613 -18.43115 -18.32997 -17.33346 -16.85221 -16.56134 -16.27800 -16.10660 -15.81353 -15.62168 -15.28491 -15.11450 -14.54064 -14.27180 -13.73297 -13.59983 -13.07742 -12.79799 -12.71624 -12.53832 -12.40810 -12.33087 -12.22790 -11.69613 -11.65936 -11.35965 -11.18462 -11.15035 -10.54816 -10.46568 -10.23567 -9.32918 -8.18598 -6.29622 -0.23246 -0.03018 1.34474 1.42532 1.43084 1.55809 1.73274 1.92198 2.42592 2.69567 2.97805 3.02828 3.15636 3.25544 3.67666 3.88013 4.16530 4.25175 4.40318 4.41653 4.50097 4.57664 4.75016 4.93285 4.97524 4.98272 5.18765 5.29353 5.39163 5.54036 5.69830 5.73529 5.74871 5.86493 5.98750 6.23999 6.83930 6.89080 6.97263 7.32907 7.40098 8.93705 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.037349 B = 0.002624 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.499578 B =10666.340872 C =11295.242379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.307 6.307 3 C 0.340 3.660 4 N -0.560 5.560 5 C 0.311 3.689 6 N -0.539 5.539 7 C 0.159 3.841 8 C 0.041 3.959 9 N -0.656 5.656 10 C 0.702 3.298 11 O -0.615 6.615 12 N -0.718 5.718 13 C 0.148 3.852 14 C -0.101 4.101 15 C 0.023 3.977 16 C -0.539 4.539 17 H 0.067 0.933 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.258 1.258 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.067 0.933 25 H 0.127 0.873 26 H 0.060 0.940 27 H 0.238 0.762 28 H 0.175 0.825 29 H 0.427 0.573 30 H 0.416 0.584 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.070 0.930 35 H -0.006 1.006 36 H -0.008 1.008 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.161 6.281 -10.192 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.211 6.211 3 C 0.149 3.851 4 N -0.290 5.290 5 C 0.024 3.976 6 N -0.257 5.257 7 C -0.005 4.005 8 C -0.060 4.060 9 N -0.306 5.306 10 C 0.402 3.598 11 O -0.495 6.495 12 N -0.373 5.373 13 C 0.024 3.976 14 C -0.139 4.139 15 C -0.015 4.015 16 C -0.577 4.577 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.790 3.210 21 H -0.182 1.182 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.086 0.914 25 H 0.145 0.855 26 H 0.079 0.921 27 H 0.254 0.746 28 H 0.192 0.808 29 H 0.266 0.734 30 H 0.253 0.747 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.012 0.988 36 H 0.011 0.989 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.046 7.608 -9.610 27.885 hybrid contribution 0.859 -1.906 -0.023 2.090 sum -24.187 5.703 -9.633 26.652 Atomic orbital electron populations 1.23233 0.74536 1.05342 1.02934 1.86215 1.25352 1.22788 1.86719 1.20030 0.87586 0.86564 0.90936 1.68212 1.40746 0.98849 1.21190 1.25427 0.88430 0.94691 0.89060 1.68517 1.07161 1.33029 1.16978 1.23424 1.01702 0.85545 0.89864 1.18429 0.88052 0.89348 1.10218 1.42033 1.18516 1.14523 1.55530 1.16028 0.80478 0.84304 0.78995 1.90905 1.71750 1.33411 1.53446 1.44994 1.22074 1.11004 1.59184 1.21188 0.82286 0.98425 0.95717 1.21599 0.96964 0.94013 1.01362 1.18950 0.92273 0.95843 0.94440 1.21717 1.04708 0.96900 1.34331 0.91499 1.26012 0.97857 1.01342 0.94945 1.70118 1.16085 1.34373 1.37020 0.85385 0.78294 0.79377 0.77893 1.18161 1.20657 1.20693 0.91435 0.85464 0.92107 0.74637 0.80785 0.73370 0.74743 0.92674 0.93108 0.91318 0.91124 0.98768 0.98910 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.41 113.37 1.18 1.53 16 2 O -0.31 -5.20 10.15 -89.05 -0.90 -6.10 16 3 C 0.34 7.03 7.55 84.98 0.64 7.68 16 4 N -0.56 -10.76 9.38 -312.48 -2.93 -13.69 16 5 C 0.31 5.62 12.28 180.89 2.22 7.84 16 6 N -0.54 -12.71 10.43 -199.81 -2.08 -14.79 16 7 C 0.16 4.13 9.98 84.72 0.85 4.97 16 8 C 0.04 0.96 6.38 38.34 0.24 1.20 16 9 N -0.66 -13.92 5.25 -316.20 -1.66 -15.58 16 10 C 0.70 19.62 8.43 179.06 1.51 21.13 16 11 O -0.62 -22.27 13.80 -4.00 -0.06 -22.32 16 12 N -0.72 -18.28 5.56 -478.54 -2.66 -20.94 16 13 C 0.15 4.93 5.67 86.38 0.49 5.42 16 14 C -0.10 -3.70 5.27 30.60 0.16 -3.54 16 15 C 0.02 1.15 4.97 29.85 0.15 1.30 16 16 C -0.54 -29.50 9.11 25.60 0.23 -29.27 16 17 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 18 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 19 N -0.94 -56.72 13.29 21.45 0.28 -56.44 16 20 Si 0.97 43.35 29.54 68.60 2.03 45.37 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 25 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.67 8.12 -2.39 -0.02 0.65 16 27 H 0.24 2.18 8.06 -2.91 -0.02 2.16 16 28 H 0.18 5.05 6.25 -2.91 -0.02 5.03 16 29 H 0.43 6.27 8.65 -92.71 -0.80 5.47 16 30 H 0.42 7.60 8.49 -92.70 -0.79 6.81 16 31 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.37 16 35 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 36 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 Total: -1.00 -72.51 324.96 -0.33 -72.84 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -0.48 Total: 13.16 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 8.14 Total: 18.49 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -9.05 Total: -121.43 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.96 Total: -28.42 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -72.51 -0.33 -72.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178213534.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.764 kcal (2) G-P(sol) polarization free energy of solvation -72.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds