Wall clock time and date at job start Fri Apr 10 2020 17:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 C 1.53008 * 109.46974 * 180.02562 * 9 8 7 11 11 S 1.81400 * 109.46892 * 179.97438 * 10 9 8 12 12 C 1.81412 * 102.99567 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.46809 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46889 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99919 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99813 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00377 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99877 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47073 * 59.99820 * 18 16 14 20 20 H 1.48495 * 109.47353 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47264 * 300.00125 * 18 16 14 22 22 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 23 23 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 24 24 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 25 25 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 27 27 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 28 28 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 29 29 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 30 30 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 31 31 H 1.08995 * 109.47455 * 299.99525 * 9 8 7 32 32 H 1.08993 * 109.47459 * 60.00249 * 9 8 7 33 33 H 1.09003 * 109.46674 * 299.99730 * 10 9 8 34 34 H 1.08993 * 109.46916 * 59.99804 * 10 9 8 35 35 H 1.08991 * 109.46968 * 299.99844 * 12 11 10 36 36 H 1.08998 * 109.47013 * 59.99905 * 12 11 10 37 37 H 1.08997 * 109.46748 * 300.00170 * 13 12 11 38 38 H 1.09000 * 109.46692 * 60.00119 * 13 12 11 39 39 H 0.96993 * 120.00394 * 179.97438 * 17 16 14 40 40 H 1.08006 * 120.02917 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 6 7.5968 2.7074 -1.4450 11 16 8.1993 2.7392 -3.1557 12 6 9.9994 2.8363 -2.9525 13 6 10.6667 2.8724 -4.3289 14 6 12.1621 2.9524 -4.1601 15 1 12.5933 2.9757 -3.1701 16 6 12.9796 2.9970 -5.2694 17 7 12.4545 2.9691 -6.4748 18 14 14.8332 3.0969 -5.0602 19 1 15.3114 1.9082 -4.3096 20 1 15.4809 3.1318 -6.3960 21 1 15.1808 4.3295 -4.3087 22 6 3.4311 1.2849 -0.0001 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2128 2.3203 -0.0106 27 1 1.3339 4.5114 0.0011 28 1 3.7922 4.6381 0.0002 29 1 5.8760 3.5065 0.5126 30 1 5.9718 1.7291 0.5125 31 1 5.7537 1.7175 -1.9574 32 1 5.6579 3.4948 -1.9574 33 1 7.9124 3.6155 -0.9312 34 1 8.0074 1.8381 -0.9316 35 1 10.2545 3.7415 -2.4016 36 1 10.3503 1.9642 -2.4008 37 1 10.4115 1.9674 -4.8801 38 1 10.3157 3.7448 -4.8800 39 1 13.0296 3.0009 -7.2552 40 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190956323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:34 Heat of formation + Delta-G solvation = -60.909466 kcal Electronic energy + Delta-G solvation = -17911.114462 eV Core-core repulsion = 15008.577618 eV Total energy + Delta-G solvation = -2902.536844 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.08370 -38.77359 -35.86225 -35.75624 -32.90222 -32.14695 -31.21927 -28.28119 -27.56437 -27.07730 -23.78007 -23.43058 -22.58278 -21.61709 -18.73060 -18.66783 -17.27672 -16.99403 -16.93941 -16.64286 -16.51348 -16.23817 -15.47638 -15.27100 -15.03551 -14.66713 -14.46787 -14.25376 -13.74455 -13.46900 -13.27842 -13.23393 -12.88337 -12.79540 -12.65853 -12.43880 -12.26164 -12.15702 -11.89446 -11.78054 -11.66488 -11.58152 -11.16909 -10.78405 -10.60207 -9.75889 -9.14421 -8.62940 -8.22813 -6.36860 0.33542 0.50002 0.84266 1.41231 1.44768 1.52955 1.82398 2.38009 2.40797 2.79897 3.10020 3.68622 3.87333 3.96018 4.09891 4.24725 4.26981 4.29459 4.36245 4.38138 4.39924 4.42410 4.48412 4.57095 4.65655 4.72042 4.76258 4.86093 4.88303 5.07348 5.15523 5.29302 5.36072 5.37810 5.49579 5.50716 5.69690 5.73633 5.85504 6.10893 6.46830 6.77362 7.32575 8.88811 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.045027 B = 0.002160 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.703433 B =12957.600047 C =13145.454680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.111 3.889 4 C -0.219 4.219 5 C -0.082 4.082 6 C -0.162 4.162 7 C -0.047 4.047 8 C -0.069 4.069 9 C -0.086 4.086 10 C -0.069 4.069 11 S -0.334 6.334 12 C -0.045 4.045 13 C 0.044 3.956 14 C -0.544 4.544 15 H 0.068 0.932 16 C -0.001 4.001 17 N -0.932 5.932 18 Si 0.974 3.026 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.264 1.264 22 C -0.169 4.169 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.116 0.884 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.139 0.861 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.075 0.925 37 H -0.006 1.006 38 H -0.005 1.005 39 H 0.266 0.734 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.307 -1.089 17.832 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.066 3.934 4 C -0.237 4.237 5 C -0.100 4.100 6 C -0.181 4.181 7 C -0.048 4.048 8 C -0.107 4.107 9 C -0.125 4.125 10 C -0.217 4.217 11 S -0.106 6.106 12 C -0.193 4.193 13 C 0.005 3.995 14 C -0.583 4.583 15 H 0.086 0.914 16 C -0.199 4.199 17 N -0.572 5.572 18 Si 0.797 3.203 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.189 1.189 22 C -0.188 4.188 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.134 0.866 26 H 0.164 0.836 27 H 0.166 0.834 28 H 0.156 0.844 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.013 0.987 38 H 0.014 0.986 39 H 0.074 0.926 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.782 -1.320 16.712 29.920 hybrid contribution 1.334 0.044 0.529 1.436 sum -23.448 -1.276 17.242 29.133 Atomic orbital electron populations 1.23318 0.76519 1.05453 1.02217 1.86047 1.23472 1.27191 1.88808 1.19232 0.92556 0.84849 0.96803 1.21496 1.01035 0.92129 1.09043 1.21274 0.94701 0.97795 0.96249 1.21277 0.94262 0.98545 1.03973 1.19782 0.96069 0.92236 0.96665 1.20591 0.89816 1.04593 0.95747 1.21202 0.91123 1.02951 0.97215 1.23394 0.99528 1.05765 0.93052 1.87060 1.09220 1.97967 1.16387 1.23288 0.90003 1.03779 1.02255 1.18684 0.94639 0.95463 0.90684 1.21531 0.91862 1.51507 0.93408 0.91375 1.26065 1.04746 0.94388 0.94720 1.70110 1.37584 1.50845 0.98611 0.85370 0.78074 0.79353 0.77455 1.18938 1.20860 1.18872 1.20491 0.91856 0.98689 1.07740 0.91537 0.91894 0.86574 0.83629 0.83388 0.84350 0.88866 0.89766 0.92004 0.91333 0.88931 0.89311 0.90492 0.90623 0.98727 0.98629 0.92563 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.69 10.50 -92.48 -0.97 -7.66 16 3 C 0.11 2.25 6.69 22.50 0.15 2.40 16 4 C -0.22 -3.58 9.04 22.37 0.20 -3.37 16 5 C -0.08 -1.26 10.04 22.26 0.22 -1.04 16 6 C -0.16 -2.76 9.70 22.28 0.22 -2.54 16 7 C -0.05 -0.90 5.13 -19.88 -0.10 -1.00 16 8 C -0.07 -1.16 5.34 29.85 0.16 -1.00 16 9 C -0.09 -1.89 5.20 30.60 0.16 -1.73 16 10 C -0.07 -1.77 5.94 71.98 0.43 -1.34 16 11 S -0.33 -12.66 21.74 -56.49 -1.23 -13.88 16 12 C -0.05 -1.95 5.88 71.98 0.42 -1.52 16 13 C 0.04 2.40 4.98 29.85 0.15 2.54 16 14 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 15 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 16 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 17 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 18 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 C -0.17 -3.57 9.64 22.36 0.22 -3.36 16 23 H 0.07 0.52 7.67 -2.39 -0.02 0.50 16 24 H 0.06 0.55 7.65 -2.39 -0.02 0.53 16 25 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.15 1.64 6.30 -2.91 -0.02 1.62 16 27 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 28 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 29 H 0.09 1.30 8.09 -2.39 -0.02 1.28 16 30 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 3.10 8.14 -2.40 -0.02 3.08 16 36 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 37 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -69.56 349.63 5.13 -64.43 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.99 Total: 9.47 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 4.03 Total: -41.14 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.28 Total: -57.37 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.97 Total: -7.66 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -12.66 SS G_CDS: -1.23 Total: -13.88 kcal Total: -69.56 5.13 -64.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190956323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.521 kcal (2) G-P(sol) polarization free energy of solvation -69.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds