Wall clock time and date at job start Fri Apr 10 2020 17:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 C 1.53003 * 109.47475 * 119.99927 * 2 1 3 5 5 C 1.50700 * 109.46947 * 295.00543 * 4 2 1 6 6 C 1.38262 * 119.98980 * 89.99854 * 5 4 2 7 7 C 1.38227 * 120.05195 * 180.02562 * 6 5 4 8 8 C 1.38219 * 120.02402 * 0.25898 * 7 6 5 9 9 C 1.38439 * 119.97325 * 359.41717 * 8 7 6 10 10 F 1.35105 * 120.02463 * 180.29881 * 9 8 7 11 11 C 1.38177 * 119.98534 * 269.97318 * 5 4 2 12 12 C 1.50703 * 109.47545 * 240.00052 * 2 1 3 13 13 O 1.20823 * 120.00144 * 240.00102 * 12 2 1 14 14 O 1.34230 * 119.99701 * 59.99376 * 12 2 1 15 15 C 1.45202 * 116.99818 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.46935 * 180.02562 * 15 14 12 17 17 C 1.50693 * 109.47068 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00334 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00027 * 179.97438 * 17 16 15 20 20 N 1.31508 * 119.99982 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99879 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47117 * 90.00223 * 21 19 17 23 23 H 1.48499 * 109.47149 * 209.99822 * 21 19 17 24 24 H 1.48498 * 109.47364 * 330.00555 * 21 19 17 25 25 H 1.08998 * 109.47661 * 59.99989 * 1 2 3 26 26 H 1.09007 * 109.47154 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47205 * 299.99680 * 1 2 3 28 28 H 1.08997 * 109.47540 * 174.99806 * 4 2 1 29 29 H 1.09003 * 109.46699 * 55.00201 * 4 2 1 30 30 H 1.07999 * 119.97792 * 359.97438 * 6 5 4 31 31 H 1.08002 * 119.98464 * 179.97438 * 7 6 5 32 32 H 1.08004 * 120.01020 * 179.72204 * 8 7 6 33 33 H 1.08000 * 120.01276 * 359.97438 * 11 5 4 34 34 H 1.09001 * 109.47086 * 299.99920 * 15 14 12 35 35 H 1.08992 * 109.46993 * 60.00401 * 15 14 12 36 36 H 1.09003 * 109.47001 * 300.00299 * 16 15 14 37 37 H 1.09000 * 109.47102 * 59.99893 * 16 15 14 38 38 H 0.96996 * 120.00071 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6412 0.0570 2.4766 6 6 0.4352 -0.2053 3.0997 7 6 0.0679 0.5081 4.2252 8 6 0.9037 1.4885 4.7259 9 6 2.1146 1.7474 4.1068 10 9 2.9351 2.7013 4.5989 11 6 2.4813 1.0322 2.9791 12 6 2.0324 -0.7104 -1.2305 13 8 2.7270 -1.6927 -1.1196 14 8 1.7080 -0.2518 -2.4496 15 6 2.2268 -0.9863 -3.5896 16 6 1.7557 -0.3190 -4.8834 17 6 2.2936 -1.0817 -6.0666 18 1 2.9101 -1.9547 -5.9114 19 6 1.9986 -0.6649 -7.3474 20 7 1.2483 0.3985 -7.5364 21 14 2.6660 -1.6098 -8.8141 22 1 1.6994 -2.6683 -9.2024 23 1 2.8648 -0.6789 -9.9538 24 1 3.9640 -2.2336 -8.4520 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.1263 -0.7995 1.2056 29 1 1.6054 -1.7198 1.2951 30 1 -0.2209 -0.9677 2.7062 31 1 -0.8747 0.3026 4.7108 32 1 0.6145 2.0488 5.6027 33 1 3.4237 1.2364 2.4927 34 1 3.3163 -0.9859 -3.5569 35 1 1.8626 -2.0131 -3.5566 36 1 0.6662 -0.3190 -4.9164 37 1 2.1202 0.7077 -4.9162 38 1 1.0411 0.6919 -8.4374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195216138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:36 Heat of formation + Delta-G solvation = -135.033868 kcal Electronic energy + Delta-G solvation = -20647.337705 eV Core-core repulsion = 17175.373410 eV Total energy + Delta-G solvation = -3471.964295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.14611 -40.33845 -39.38719 -36.38394 -35.06736 -33.35715 -31.52347 -30.72396 -30.13340 -27.08740 -25.43946 -24.00070 -22.92283 -21.84656 -20.88994 -19.85121 -17.79812 -17.12564 -16.62876 -16.47289 -16.32360 -16.00293 -15.93507 -15.74828 -14.55558 -14.54497 -14.27160 -13.72465 -13.57563 -13.35936 -12.91998 -12.68190 -12.42058 -12.35452 -12.17197 -11.91153 -11.34974 -11.31890 -11.24339 -11.16155 -11.02873 -10.76433 -10.68428 -10.15415 -9.65907 -9.62607 -9.32325 -9.24803 -8.95084 -8.45838 -6.11842 -4.16270 0.82806 0.88240 2.54615 3.06064 3.27454 3.31771 3.34263 3.39015 3.93837 4.34830 4.40397 4.45992 4.65223 4.72434 4.80310 4.89023 5.03359 5.04952 5.24779 5.33921 5.45407 5.49560 5.65849 5.68489 5.76823 5.81153 5.94369 5.99677 6.07641 6.08305 6.10507 6.23788 6.58094 6.62328 6.98731 7.54382 7.60754 7.85238 8.17015 8.25047 8.89359 9.48242 10.99699 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.040072 B = 0.002601 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.582590 B =10761.748333 C =10830.601681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 H 0.108 0.892 4 C -0.069 4.069 5 C -0.047 4.047 6 C -0.124 4.124 7 C -0.090 4.090 8 C -0.160 4.160 9 C 0.099 3.901 10 F -0.141 7.141 11 C -0.150 4.150 12 C 0.459 3.541 13 O -0.519 6.519 14 O -0.355 6.355 15 C 0.075 3.925 16 C 0.025 3.975 17 C -0.527 4.527 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.272 1.272 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 1.573 24.175 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 H 0.126 0.874 4 C -0.106 4.106 5 C -0.047 4.047 6 C -0.142 4.142 7 C -0.108 4.108 8 C -0.179 4.179 9 C 0.080 3.920 10 F -0.120 7.120 11 C -0.169 4.169 12 C 0.302 3.698 13 O -0.408 6.408 14 O -0.271 6.271 15 C 0.002 3.998 16 C -0.012 4.012 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.680 1.431 24.022 24.213 hybrid contribution 0.605 -0.327 -0.805 1.059 sum -2.075 1.104 23.217 23.335 Atomic orbital electron populations 1.21863 0.91937 1.03039 1.03700 1.20951 0.98579 1.00894 0.89427 0.87414 1.20537 1.02773 0.98350 0.88983 1.19686 0.93782 0.95155 0.96061 1.21210 0.96366 1.00704 0.95924 1.21019 0.99297 0.94656 0.95789 1.21152 0.93870 1.00834 1.02010 1.17705 0.89721 0.89552 0.95022 1.91507 1.71593 1.61719 1.87143 1.21106 1.01832 0.97560 0.96378 1.23466 0.77596 0.82892 0.85861 1.90625 1.36164 1.26267 1.87782 1.86523 1.69297 1.56193 1.15044 1.23644 0.98086 0.95244 0.82813 1.19164 0.97832 0.96805 0.87439 1.20981 1.32506 1.12669 0.90342 0.92275 1.24984 0.94991 0.95087 0.99087 1.69969 1.36967 1.23921 1.21995 0.86473 0.79424 0.79606 0.81817 1.20466 1.21032 1.19721 0.90616 0.91991 0.91048 0.89477 0.89454 0.85022 0.84941 0.84906 0.84567 0.92357 0.92341 0.95368 0.95369 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.69 37.15 0.32 -1.20 16 2 C -0.08 -0.93 2.82 -91.77 -0.26 -1.19 16 3 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.07 -0.70 4.19 -27.88 -0.12 -0.82 16 5 C -0.05 -0.42 4.71 -104.64 -0.49 -0.91 16 6 C -0.12 -0.95 7.96 -39.58 -0.32 -1.26 16 7 C -0.09 -0.62 10.04 -39.59 -0.40 -1.02 16 8 C -0.16 -1.26 10.03 -39.51 -0.40 -1.66 16 9 C 0.10 0.95 7.30 -39.42 -0.29 0.66 16 10 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 11 C -0.15 -1.41 9.68 -39.51 -0.38 -1.79 16 12 C 0.46 7.69 7.26 36.01 0.26 7.95 16 13 O -0.52 -9.89 15.67 -18.75 -0.29 -10.18 16 14 O -0.35 -6.96 10.12 -39.26 -0.40 -7.36 16 15 C 0.07 1.65 5.40 37.16 0.20 1.86 16 16 C 0.02 0.64 5.35 -27.89 -0.15 0.50 16 17 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 21 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.60 6.27 -51.93 -0.33 0.27 16 28 H 0.09 0.94 7.90 -51.93 -0.41 0.53 16 29 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 30 H 0.13 0.81 8.04 -52.49 -0.42 0.39 16 31 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.06 1.29 8.13 -51.93 -0.42 0.86 16 35 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -31.35 332.67 -7.69 -39.04 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -5.34 Total: -3.41 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -2.42 Total: -12.38 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.69 Total: -17.54 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.35 -7.69 -39.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195216138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.995 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds