Wall clock time and date at job start Fri Apr 10 2020 17:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 C 1.53003 * 109.47475 * 119.99927 * 2 1 3 5 5 C 1.50700 * 109.46947 * 295.00543 * 4 2 1 6 6 C 1.38262 * 119.98980 * 89.99854 * 5 4 2 7 7 C 1.38227 * 120.05195 * 180.02562 * 6 5 4 8 8 C 1.38219 * 120.02402 * 0.25898 * 7 6 5 9 9 C 1.38439 * 119.97325 * 359.41717 * 8 7 6 10 10 F 1.35105 * 120.02463 * 180.29881 * 9 8 7 11 11 C 1.38177 * 119.98534 * 269.97318 * 5 4 2 12 12 C 1.50703 * 109.47545 * 240.00052 * 2 1 3 13 13 O 1.20823 * 120.00144 * 240.00102 * 12 2 1 14 14 O 1.34230 * 119.99701 * 59.99376 * 12 2 1 15 15 C 1.45202 * 116.99818 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.46935 * 180.02562 * 15 14 12 17 17 C 1.50693 * 109.47068 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00334 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00027 * 179.97438 * 17 16 15 20 20 N 1.31508 * 119.99982 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99879 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47117 * 90.00223 * 21 19 17 23 23 H 1.48499 * 109.47149 * 209.99822 * 21 19 17 24 24 H 1.48498 * 109.47364 * 330.00555 * 21 19 17 25 25 H 1.08998 * 109.47661 * 59.99989 * 1 2 3 26 26 H 1.09007 * 109.47154 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47205 * 299.99680 * 1 2 3 28 28 H 1.08997 * 109.47540 * 174.99806 * 4 2 1 29 29 H 1.09003 * 109.46699 * 55.00201 * 4 2 1 30 30 H 1.07999 * 119.97792 * 359.97438 * 6 5 4 31 31 H 1.08002 * 119.98464 * 179.97438 * 7 6 5 32 32 H 1.08004 * 120.01020 * 179.72204 * 8 7 6 33 33 H 1.08000 * 120.01276 * 359.97438 * 11 5 4 34 34 H 1.09001 * 109.47086 * 299.99920 * 15 14 12 35 35 H 1.08992 * 109.46993 * 60.00401 * 15 14 12 36 36 H 1.09003 * 109.47001 * 300.00299 * 16 15 14 37 37 H 1.09000 * 109.47102 * 59.99893 * 16 15 14 38 38 H 0.96996 * 120.00071 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6412 0.0570 2.4766 6 6 0.4352 -0.2053 3.0997 7 6 0.0679 0.5081 4.2252 8 6 0.9037 1.4885 4.7259 9 6 2.1146 1.7474 4.1068 10 9 2.9351 2.7013 4.5989 11 6 2.4813 1.0322 2.9791 12 6 2.0324 -0.7104 -1.2305 13 8 2.7270 -1.6927 -1.1196 14 8 1.7080 -0.2518 -2.4496 15 6 2.2268 -0.9863 -3.5896 16 6 1.7557 -0.3190 -4.8834 17 6 2.2936 -1.0817 -6.0666 18 1 2.9101 -1.9547 -5.9114 19 6 1.9986 -0.6649 -7.3474 20 7 1.2483 0.3985 -7.5364 21 14 2.6660 -1.6098 -8.8141 22 1 1.6994 -2.6683 -9.2024 23 1 2.8648 -0.6789 -9.9538 24 1 3.9640 -2.2336 -8.4520 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.1263 -0.7995 1.2056 29 1 1.6054 -1.7198 1.2951 30 1 -0.2209 -0.9677 2.7062 31 1 -0.8747 0.3026 4.7108 32 1 0.6145 2.0488 5.6027 33 1 3.4237 1.2364 2.4927 34 1 3.3163 -0.9859 -3.5569 35 1 1.8626 -2.0131 -3.5566 36 1 0.6662 -0.3190 -4.9164 37 1 2.1202 0.7077 -4.9162 38 1 1.0411 0.6919 -8.4374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195216138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:36 Heat of formation + Delta-G solvation = -150.424146 kcal Electronic energy + Delta-G solvation = -20648.005078 eV Core-core repulsion = 17175.373410 eV Total energy + Delta-G solvation = -3472.631668 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.88288 -41.66011 -40.18043 -37.86650 -36.06461 -35.44858 -32.54696 -31.96326 -31.27619 -27.86259 -27.28412 -25.25101 -23.61629 -23.06181 -22.45005 -21.03499 -19.03106 -18.40759 -17.88369 -17.64820 -17.38406 -17.22689 -17.05046 -16.58381 -16.48463 -15.65056 -14.98285 -14.85984 -14.67239 -14.42098 -14.33690 -13.90974 -13.77699 -13.24311 -13.09890 -13.05248 -12.96310 -12.62333 -12.60201 -12.54548 -12.16802 -12.12044 -11.90731 -11.80067 -11.50728 -11.47124 -11.21903 -10.62262 -9.90925 -9.60306 -8.28083 -6.41403 0.18340 0.26258 1.17311 1.40453 1.42344 1.53378 1.75894 2.39309 2.64372 3.06362 3.26098 3.52421 3.75618 3.77846 3.98397 3.98631 4.17419 4.21176 4.24012 4.28523 4.34041 4.43725 4.66958 4.69454 4.78360 4.85603 4.96146 5.10284 5.14100 5.20547 5.24689 5.30278 5.40319 5.45589 5.55795 5.57734 5.74088 5.96825 6.05577 6.70319 6.75015 7.28533 8.84588 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.040072 B = 0.002601 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.582590 B =10761.748333 C =10830.601681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 H 0.119 0.881 4 C -0.061 4.061 5 C -0.054 4.054 6 C -0.122 4.122 7 C -0.084 4.084 8 C -0.158 4.158 9 C 0.076 3.924 10 F -0.153 7.153 11 C -0.161 4.161 12 C 0.456 3.544 13 O -0.542 6.542 14 O -0.364 6.364 15 C 0.090 3.910 16 C 0.031 3.969 17 C -0.551 4.551 18 H 0.064 0.936 19 C 0.006 3.994 20 N -0.927 5.927 21 Si 0.973 3.027 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.264 1.264 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.163 0.837 32 H 0.150 0.850 33 H 0.134 0.866 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.007 0.993 37 H 0.005 0.995 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.592 0.802 25.211 25.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 H 0.137 0.863 4 C -0.098 4.098 5 C -0.054 4.054 6 C -0.140 4.140 7 C -0.102 4.102 8 C -0.177 4.177 9 C 0.057 3.943 10 F -0.132 7.132 11 C -0.180 4.180 12 C 0.301 3.699 13 O -0.432 6.432 14 O -0.280 6.280 15 C 0.017 3.983 16 C -0.006 4.006 17 C -0.589 4.589 18 H 0.083 0.917 19 C -0.193 4.193 20 N -0.566 5.566 21 Si 0.797 3.203 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.188 1.188 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.169 0.831 31 H 0.181 0.819 32 H 0.168 0.832 33 H 0.152 0.848 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.026 0.974 37 H 0.024 0.976 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.426 0.659 25.084 25.325 hybrid contribution 0.805 -0.059 -1.025 1.304 sum -2.621 0.600 24.059 24.209 Atomic orbital electron populations 1.21877 0.90361 1.03631 1.04280 1.21102 0.99723 1.00904 0.87266 0.86277 1.20437 1.02143 0.98528 0.88725 1.19549 0.94613 0.95332 0.95911 1.21481 0.95810 1.00803 0.95869 1.21371 1.00069 0.93528 0.95226 1.21452 0.93096 1.00917 1.02238 1.17960 0.90585 0.90025 0.95728 1.91474 1.72109 1.62257 1.87332 1.21174 1.02099 0.97984 0.96697 1.24508 0.76797 0.82735 0.85831 1.90610 1.37244 1.27518 1.87849 1.86522 1.69609 1.56202 1.15687 1.23143 0.97782 0.94842 0.82574 1.18971 0.96315 0.95801 0.89521 1.21379 1.32909 1.13153 0.91434 0.91750 1.25964 0.95029 0.95972 1.02304 1.70088 1.38029 1.25454 1.23026 0.85327 0.79062 0.78261 0.77686 1.19439 1.20374 1.18787 0.91928 0.91433 0.88531 0.90496 0.89131 0.83149 0.81900 0.83208 0.84804 0.92429 0.92182 0.97441 0.97637 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.69 71.98 0.63 -2.07 16 2 C -0.07 -1.59 2.82 -11.54 -0.03 -1.63 16 3 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 4 C -0.06 -1.17 4.19 29.85 0.13 -1.04 16 5 C -0.05 -0.87 4.71 -19.87 -0.09 -0.97 16 6 C -0.12 -1.49 7.96 22.27 0.18 -1.31 16 7 C -0.08 -0.87 10.04 22.26 0.22 -0.65 16 8 C -0.16 -2.12 10.03 22.31 0.22 -1.90 16 9 C 0.08 1.38 7.30 22.38 0.16 1.54 16 10 F -0.15 -3.21 17.27 44.97 0.78 -2.43 16 11 C -0.16 -2.89 9.68 22.31 0.22 -2.68 16 12 C 0.46 15.20 7.26 71.24 0.52 15.71 16 13 O -0.54 -20.59 15.67 21.97 0.34 -20.25 16 14 O -0.36 -14.45 10.12 -51.41 -0.52 -14.97 16 15 C 0.09 4.05 5.40 71.98 0.39 4.44 16 16 C 0.03 1.68 5.35 29.85 0.16 1.84 16 17 C -0.55 -31.34 9.11 25.60 0.23 -31.11 16 18 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 19 C 0.01 0.36 5.46 84.66 0.46 0.82 16 20 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 21 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 25 H 0.06 1.35 8.11 -2.39 -0.02 1.34 16 26 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.10 1.33 6.27 -2.39 -0.01 1.31 16 28 H 0.08 1.63 7.90 -2.39 -0.02 1.61 16 29 H 0.09 1.67 8.09 -2.39 -0.02 1.65 16 30 H 0.15 1.28 8.04 -2.91 -0.02 1.25 16 31 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 32 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 34 H 0.06 2.58 8.13 -2.39 -0.02 2.56 16 35 H 0.06 2.67 8.13 -2.39 -0.02 2.65 16 36 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -67.86 332.67 7.35 -60.51 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 1.04 Total: 5.78 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 3.39 Total: -18.99 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.28 Total: -55.25 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.18 Total: -35.22 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -67.86 7.35 -60.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195216138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.913 kcal (2) G-P(sol) polarization free energy of solvation -67.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds