Wall clock time and date at job start Fri Apr 10 2020 17:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37481 * 119.99621 * 2 1 4 4 N 1.30343 * 120.00391 * 0.02562 * 3 2 1 5 5 C 1.46495 * 120.00272 * 186.22639 * 4 3 2 6 6 C 1.50704 * 109.46794 * 245.59671 * 5 4 3 7 7 O 1.21282 * 120.00255 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99581 * 180.02562 * 6 5 4 9 9 C 1.37097 * 119.99469 * 180.02562 * 8 6 5 10 10 H 1.08000 * 120.00049 * 359.97438 * 9 8 6 11 11 C 1.38949 * 119.99858 * 179.97438 * 9 8 6 12 12 N 1.31418 * 119.99858 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00213 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46671 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46964 * 119.99867 * 13 11 9 16 16 H 1.48493 * 109.47165 * 239.99767 * 13 11 9 17 17 N 1.37487 * 119.99881 * 179.97438 * 3 2 1 18 18 C 1.46503 * 120.00016 * 355.15247 * 17 3 2 19 19 C 1.50699 * 109.46831 * 180.02562 * 18 17 3 20 20 C 1.34509 * 125.79321 * 89.99750 * 19 18 17 21 21 C 1.41384 * 106.83975 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84102 * 359.97438 * 21 20 19 23 23 O 1.34300 * 108.42456 * 359.73811 * 22 21 20 24 24 H 1.09002 * 109.46589 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47402 * 299.99809 * 1 2 3 26 26 H 1.09004 * 109.47315 * 60.00151 * 1 2 3 27 27 H 0.96998 * 120.00222 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47232 * 5.59452 * 5 4 3 29 29 H 1.08998 * 109.47358 * 125.59332 * 5 4 3 30 30 H 0.96996 * 119.99970 * 359.97438 * 8 6 5 31 31 H 0.97003 * 119.99920 * 180.02562 * 12 11 9 32 32 H 0.97005 * 119.99707 * 174.86810 * 17 3 2 33 33 H 1.08997 * 109.46384 * 299.99348 * 18 17 3 34 34 H 1.08991 * 109.47265 * 59.99548 * 18 17 3 35 35 H 1.07999 * 126.57779 * 0.03637 * 20 19 18 36 36 H 1.08007 * 126.57562 * 179.97438 * 21 20 19 37 37 H 1.08001 * 125.78821 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1524 1.1907 0.0000 4 7 1.5007 2.3195 0.0005 5 6 2.2266 3.5845 -0.1371 6 6 2.0906 4.3824 1.1341 7 8 1.4500 3.9384 2.0633 8 7 2.6800 5.5901 1.2380 9 6 2.5567 6.3157 2.3946 10 1 1.9870 5.9199 3.2223 11 6 3.1648 7.5605 2.5019 12 7 3.8577 8.0423 1.4946 13 14 2.9963 8.5496 4.0776 14 1 2.1717 7.7911 5.0523 15 1 4.3426 8.7952 4.6542 16 1 2.3413 9.8484 3.7790 17 7 3.5273 1.1907 0.0005 18 6 4.2598 -0.0734 0.1083 19 6 5.7414 0.2012 0.0862 20 6 6.5140 0.4367 1.1618 21 6 7.8291 0.6410 0.6846 22 6 7.7816 0.5174 -0.6539 23 8 6.5157 0.2450 -1.0104 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.9501 -0.8400 -0.0004 28 1 3.2803 3.3800 -0.3267 29 1 1.8114 4.1530 -0.9692 30 1 3.1920 5.9453 0.4947 31 1 4.2826 8.9111 1.5696 32 1 4.0122 2.0275 -0.0746 33 1 3.9961 -0.5674 1.0435 34 1 3.9968 -0.7184 -0.7300 35 1 6.1917 0.4636 2.1922 36 1 8.7040 0.8551 1.2806 37 1 8.6201 0.6156 -1.3274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262129360.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:44 Heat of formation + Delta-G solvation = 2.035752 kcal Electronic energy + Delta-G solvation = -21276.860677 eV Core-core repulsion = 17863.052879 eV Total energy + Delta-G solvation = -3413.807798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.55053 -40.34082 -39.39259 -35.98645 -35.54346 -34.60424 -33.85755 -33.22222 -31.01743 -28.91742 -27.15644 -26.42061 -25.90590 -22.74329 -21.66828 -21.56403 -20.43172 -19.80315 -19.06926 -18.49040 -17.79740 -17.30522 -16.78031 -16.54984 -15.86675 -15.83721 -15.65684 -15.38189 -15.07623 -14.66583 -14.49415 -14.25230 -13.81940 -13.59350 -13.56146 -13.37483 -13.23920 -12.87839 -12.74918 -12.42106 -12.35678 -12.12721 -11.51759 -10.93670 -10.42494 -10.13104 -9.99913 -9.72132 -9.52130 -8.73506 -8.44557 -5.95361 0.60193 1.35541 1.39496 1.54598 1.58597 1.91272 2.01242 2.02240 2.13770 2.31836 2.88730 3.19503 3.42095 3.60250 4.06066 4.12104 4.13571 4.30400 4.38378 4.43240 4.55046 4.62444 4.69829 4.86224 4.88357 4.96264 5.11522 5.17731 5.39982 5.51156 5.58068 5.97240 6.02629 6.12509 6.25699 6.61838 6.91065 7.13381 7.55606 7.74177 8.14817 8.71620 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.012817 B = 0.004690 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.015031 B = 5968.641732 C = 7638.809162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.717 5.717 3 C 0.620 3.380 4 N -0.665 5.665 5 C 0.085 3.915 6 C 0.438 3.562 7 O -0.623 6.623 8 N -0.576 5.576 9 C -0.333 4.333 10 H 0.074 0.926 11 C -0.013 4.013 12 N -0.921 5.921 13 Si 0.994 3.006 14 H -0.275 1.275 15 H -0.268 1.268 16 H -0.269 1.269 17 N -0.770 5.770 18 C 0.203 3.797 19 C -0.049 4.049 20 C -0.198 4.198 21 C -0.235 4.235 22 C -0.026 4.026 23 O -0.184 6.184 24 H 0.109 0.891 25 H 0.029 0.971 26 H 0.046 0.954 27 H 0.417 0.583 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.395 0.605 31 H 0.278 0.722 32 H 0.404 0.596 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.149 0.851 36 H 0.165 0.835 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.260 -19.530 -7.374 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.361 5.361 3 C 0.256 3.744 4 N -0.409 5.409 5 C -0.050 4.050 6 C 0.225 3.775 7 O -0.508 6.508 8 N -0.214 5.214 9 C -0.463 4.463 10 H 0.092 0.908 11 C -0.213 4.213 12 N -0.563 5.563 13 Si 0.818 3.182 14 H -0.200 1.200 15 H -0.193 1.193 16 H -0.194 1.194 17 N -0.419 5.419 18 C 0.079 3.921 19 C -0.099 4.099 20 C -0.219 4.219 21 C -0.254 4.254 22 C -0.094 4.094 23 O -0.081 6.081 24 H 0.127 0.873 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.255 0.745 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.229 0.771 31 H 0.087 0.913 32 H 0.243 0.757 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.167 0.833 36 H 0.183 0.817 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 5.827 -19.482 -7.007 21.508 hybrid contribution 1.668 1.119 0.627 2.104 sum 7.494 -18.362 -6.380 20.834 Atomic orbital electron populations 1.21369 0.77410 1.02927 1.00803 1.43562 1.07157 1.03009 1.82421 1.19153 0.79078 0.88774 0.87417 1.72427 1.32217 0.95352 1.40896 1.21131 0.97244 0.92216 0.94380 1.21191 0.82715 0.82818 0.90771 1.90445 1.45866 1.71709 1.42825 1.41981 1.47215 1.16211 1.15973 1.19682 1.32132 1.00229 0.94260 0.90786 1.26053 0.95615 0.97498 1.02106 1.69690 1.34002 1.20140 1.32436 0.84860 0.78384 0.77768 0.77218 1.20015 1.19310 1.19379 1.45542 1.03481 1.09697 1.83199 1.19762 0.81352 0.86654 1.04295 1.22315 0.94014 1.09163 0.84430 1.21990 0.94206 1.05443 1.00225 1.22207 0.98775 1.08710 0.95688 1.24862 0.85118 1.02448 0.96967 1.84026 1.19449 1.69431 1.35145 0.87268 0.95190 0.93476 0.74523 0.92326 0.88837 0.77139 0.91285 0.75740 0.87847 0.88235 0.83273 0.81722 0.74321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.55 10.70 127.77 1.37 3.92 16 2 N -0.72 -15.96 5.73 -370.91 -2.12 -18.09 16 3 C 0.62 19.27 8.36 260.53 2.18 21.44 16 4 N -0.67 -26.78 9.26 -353.10 -3.27 -30.05 16 5 C 0.09 3.58 6.76 85.64 0.58 4.15 16 6 C 0.44 23.63 7.85 87.66 0.69 24.32 16 7 O -0.62 -38.93 16.01 -3.03 -0.05 -38.98 16 8 N -0.58 -32.18 5.29 -306.98 -1.62 -33.80 16 9 C -0.33 -20.18 9.68 84.04 0.81 -19.36 16 10 H 0.07 4.80 7.16 -2.91 -0.02 4.78 16 11 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 12 N -0.92 -51.74 13.05 21.66 0.28 -51.46 16 13 Si 0.99 44.75 29.55 68.60 2.03 46.78 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 N -0.77 -20.51 5.52 -353.15 -1.95 -22.46 16 18 C 0.20 3.76 5.61 85.63 0.48 4.24 16 19 C -0.05 -1.06 6.69 24.83 0.17 -0.89 16 20 C -0.20 -4.43 10.81 22.19 0.24 -4.19 16 21 C -0.23 -4.53 10.91 22.19 0.24 -4.28 16 22 C -0.03 -0.45 12.09 66.97 0.81 0.36 16 23 O -0.18 -3.91 10.65 -2.52 -0.03 -3.94 16 24 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.42 5.94 7.36 -92.71 -0.68 5.26 16 28 H 0.06 2.16 5.45 -2.39 -0.01 2.14 16 29 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 30 H 0.39 20.91 7.90 -92.71 -0.73 20.18 16 31 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.40 12.17 5.84 -92.70 -0.54 11.63 16 33 H 0.10 1.61 8.13 -2.39 -0.02 1.59 16 34 H 0.10 1.34 7.84 -2.39 -0.02 1.32 16 35 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 36 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.24 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -81.41 326.04 0.47 -80.94 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: -0.83 Total: 41.64 kcal Atomic # 6 Polarization: 21.39 SS G_CDS: 8.03 Total: 29.42 kcal Atomic # 7 Polarization: -147.17 SS G_CDS: -8.68 Total: -155.85 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.08 Total: -42.92 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -81.41 0.47 -80.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262129360.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.978 kcal (2) G-P(sol) polarization free energy of solvation -81.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds