Wall clock time and date at job start Fri Apr 10 2020 17:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47354 * 2 1 4 4 C 1.46498 * 120.00122 * 270.00115 * 3 2 1 5 5 C 1.50696 * 109.47024 * 269.99627 * 4 3 2 6 6 H 1.08000 * 119.99933 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00042 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00003 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00104 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47105 * 89.99485 * 9 7 5 11 11 H 1.48495 * 109.47208 * 209.99537 * 9 7 5 12 12 H 1.48501 * 109.47089 * 329.99759 * 9 7 5 13 13 C 1.34783 * 119.99723 * 89.99493 * 3 2 1 14 14 O 1.21576 * 119.99830 * 180.02562 * 13 3 2 15 15 N 1.34771 * 120.00472 * 0.02562 * 13 3 2 16 16 C 1.39055 * 120.00533 * 185.08042 * 15 13 3 17 17 C 1.39162 * 120.49199 * 174.83876 * 16 15 13 18 18 C 1.38969 * 118.28684 * 179.97438 * 17 16 15 19 19 O 1.35541 * 120.46586 * 180.02562 * 18 17 16 20 20 C 1.42902 * 117.00118 * 180.02562 * 19 18 17 21 21 N 1.32986 * 119.06156 * 0.02562 * 18 17 16 22 22 C 1.31750 * 120.89431 * 359.97438 * 21 18 17 23 23 N 1.31746 * 121.88798 * 359.97438 * 22 21 18 24 24 H 1.09004 * 109.46764 * 59.99655 * 1 2 3 25 25 H 1.08994 * 109.47595 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47444 * 300.00433 * 1 2 3 27 27 H 1.08997 * 109.47604 * 240.00095 * 2 1 3 28 28 H 1.09003 * 109.47022 * 119.99610 * 2 1 3 29 29 H 1.08996 * 109.47386 * 29.99635 * 4 3 2 30 30 H 1.09002 * 109.47374 * 149.99924 * 4 3 2 31 31 H 0.96998 * 119.99920 * 180.02562 * 8 7 5 32 32 H 0.97004 * 119.99528 * 5.07740 * 15 13 3 33 33 H 1.07997 * 120.85730 * 0.25377 * 17 16 15 34 34 H 1.08999 * 109.46922 * 300.00541 * 20 19 18 35 35 H 1.09005 * 109.46992 * 59.99753 * 20 19 18 36 36 H 1.08995 * 109.47222 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.05534 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3428 1.2309 -1.0956 7 6 4.1491 2.3897 -2.8779 8 7 5.3914 2.1834 -3.2572 9 14 3.0129 3.4352 -3.9292 10 1 3.1163 4.8555 -3.5080 11 1 3.4059 3.3121 -5.3559 12 1 1.6131 2.9692 -3.7593 13 6 2.2429 2.0166 1.1673 14 8 2.6477 3.1629 1.1673 15 7 2.0187 1.3812 2.3345 16 6 2.1484 2.0683 3.5364 17 6 1.8164 1.4542 4.7402 18 6 1.9642 2.1831 5.9141 19 8 1.6544 1.6282 7.1113 20 6 1.8339 2.4442 8.2706 21 7 2.4139 3.4328 5.8462 22 6 2.7180 3.9803 4.6871 23 7 2.5928 3.3224 3.5525 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5818 1.6878 -2.0284 30 1 2.0956 3.1411 -1.1384 31 1 5.7175 2.5739 -4.0831 32 1 1.7667 0.4444 2.3361 33 1 1.4575 0.4358 4.7621 34 1 2.8798 2.7414 8.3473 35 1 1.2087 3.3334 8.1893 36 1 1.5506 1.8804 9.1593 37 1 3.0811 4.9972 4.6665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272925122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:53 Heat of formation + Delta-G solvation = -14.945472 kcal Electronic energy + Delta-G solvation = -21724.543941 eV Core-core repulsion = 18309.999782 eV Total energy + Delta-G solvation = -3414.544159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.44656 -41.16410 -39.42164 -37.20059 -36.41246 -34.79384 -33.36685 -32.33791 -31.80296 -29.53981 -28.26451 -25.52153 -25.31645 -24.40673 -23.58808 -21.28261 -20.24569 -19.14822 -18.87868 -18.58160 -17.34699 -17.23324 -16.61097 -16.57269 -16.41160 -16.00343 -15.67897 -15.28823 -15.03948 -14.94845 -14.75005 -14.41742 -13.88543 -13.48351 -13.18680 -12.89587 -12.80263 -12.60408 -12.42139 -12.25333 -12.03998 -11.98536 -11.74424 -11.71261 -11.28649 -10.80541 -10.45509 -10.14591 -9.89915 -9.38028 -8.31552 -6.36506 -0.09559 0.18407 1.25798 1.36322 1.40302 1.47855 2.02554 2.16640 2.33460 2.71799 2.87316 3.03400 3.10649 3.39567 3.87115 4.04071 4.10069 4.35431 4.43216 4.45383 4.46810 4.51678 4.70806 4.76846 4.84494 4.90793 4.98302 4.99259 5.35887 5.38643 5.47658 5.53515 5.65038 5.95127 6.16153 6.28061 6.64857 6.83385 7.19951 7.26094 7.58870 8.85602 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027786 B = 0.004062 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.473473 B = 6891.479183 C = 7461.990109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 N -0.608 5.608 4 C 0.243 3.757 5 C -0.535 4.535 6 H 0.027 0.973 7 C 0.011 3.989 8 N -0.947 5.947 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.235 1.235 13 C 0.687 3.313 14 O -0.571 6.571 15 N -0.648 5.648 16 C 0.435 3.565 17 C -0.278 4.278 18 C 0.373 3.627 19 O -0.304 6.304 20 C 0.033 3.967 21 N -0.601 5.601 22 C 0.357 3.643 23 N -0.572 5.572 24 H 0.049 0.951 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.019 0.981 31 H 0.268 0.732 32 H 0.431 0.569 33 H 0.183 0.817 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.130 0.870 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.369 -5.272 18.849 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.344 5.344 4 C 0.121 3.879 5 C -0.574 4.574 6 H 0.046 0.954 7 C -0.187 4.187 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.201 1.201 12 H -0.158 1.158 13 C 0.387 3.613 14 O -0.444 6.444 15 N -0.300 5.300 16 C 0.196 3.804 17 C -0.305 4.305 18 C 0.187 3.813 19 O -0.209 6.209 20 C -0.061 4.061 21 N -0.335 5.335 22 C 0.069 3.931 23 N -0.297 5.297 24 H 0.069 0.931 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.273 0.727 33 H 0.200 0.800 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.148 0.852 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -12.781 -3.877 18.641 22.932 hybrid contribution 0.109 -0.435 -0.653 0.792 sum -12.672 -4.311 17.989 22.422 Atomic orbital electron populations 1.22181 0.93759 1.03885 1.02129 1.21796 0.95744 0.81007 1.04081 1.47311 1.67530 1.15369 1.04150 1.19245 0.94790 0.92861 0.81021 1.21582 0.97157 1.32090 1.06570 0.95447 1.25843 0.96708 0.97162 0.98988 1.70056 1.17486 1.46654 1.24507 0.85715 0.80584 0.78967 0.77661 1.20370 1.20121 1.15763 1.16171 0.79328 0.84817 0.80942 1.90989 1.49791 1.18101 1.85560 1.42702 1.70198 1.14971 1.02081 1.18333 0.88147 0.88530 0.85385 1.21120 1.15824 1.05297 0.88298 1.19824 0.86928 0.87743 0.86785 1.86216 1.80227 1.41609 1.12799 1.23199 1.02601 0.96062 0.84221 1.68182 1.21908 1.12020 1.31355 1.25089 0.88044 0.99942 0.80043 1.68538 1.20374 1.08622 1.32117 0.93141 0.88265 0.92574 0.89922 0.89240 0.92597 0.96261 0.92318 0.72689 0.79978 0.92220 0.92048 0.85242 0.76185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 10.24 71.98 0.74 -2.56 16 2 C 0.10 2.62 5.94 86.38 0.51 3.13 16 3 N -0.61 -24.35 2.46 -844.22 -2.07 -26.43 16 4 C 0.24 11.74 4.23 85.63 0.36 12.10 16 5 C -0.54 -31.50 9.94 25.60 0.25 -31.25 16 6 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 7 C 0.01 0.64 5.47 84.65 0.46 1.10 16 8 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 9 Si 0.95 44.44 27.47 68.60 1.88 46.32 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.23 -9.73 6.54 99.48 0.65 -9.08 16 13 C 0.69 28.93 8.24 179.05 1.47 30.41 16 14 O -0.57 -30.02 14.23 -3.96 -0.06 -30.08 16 15 N -0.65 -20.04 5.26 -321.89 -1.69 -21.74 16 16 C 0.43 13.64 7.45 132.85 0.99 14.63 16 17 C -0.28 -6.60 9.99 22.67 0.23 -6.37 16 18 C 0.37 9.08 7.52 84.69 0.64 9.71 16 19 O -0.30 -6.05 10.49 -88.46 -0.93 -6.98 16 20 C 0.03 0.45 10.41 113.37 1.18 1.63 16 21 N -0.60 -15.64 9.38 -313.04 -2.94 -18.57 16 22 C 0.36 10.32 12.28 180.91 2.22 12.54 16 23 N -0.57 -20.83 8.04 -197.56 -1.59 -22.42 16 24 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 28 H 0.09 1.87 6.29 -2.39 -0.02 1.85 16 29 H 0.06 2.44 7.13 -2.39 -0.02 2.42 16 30 H 0.02 1.01 6.85 -2.39 -0.02 0.99 16 31 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 32 H 0.43 9.32 6.41 -92.70 -0.59 8.72 16 33 H 0.18 2.93 8.06 -2.91 -0.02 2.91 16 34 H 0.06 0.85 8.12 -2.39 -0.02 0.83 16 35 H 0.06 0.85 8.12 -2.38 -0.02 0.83 16 36 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.22 5.01 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -83.22 319.77 2.41 -80.81 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.44 Total: 13.95 kcal Atomic # 6 Polarization: 36.03 SS G_CDS: 9.06 Total: 45.09 kcal Atomic # 7 Polarization: -141.12 SS G_CDS: -7.99 Total: -149.11 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.98 Total: -37.06 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Total: -83.22 2.41 -80.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272925122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.860 kcal (2) G-P(sol) polarization free energy of solvation -83.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds