Wall clock time and date at job start Fri Apr 10 2020 17:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 116.99893 * 2 1 4 4 C 1.38782 * 119.63563 * 179.97438 * 3 2 1 5 5 C 1.38590 * 119.27138 * 179.97438 * 4 3 2 6 6 C 1.38495 * 118.57026 * 0.02562 * 5 4 3 7 7 C 1.38982 * 119.22122 * 359.97438 * 6 5 4 8 8 N 1.39006 * 119.66867 * 179.97438 * 7 6 5 9 9 N 1.40095 * 119.99721 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99750 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00082 * 179.97438 * 10 9 8 12 12 N 1.34780 * 120.00116 * 0.02562 * 10 9 8 13 13 C 1.46498 * 119.99773 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.46663 * 179.97438 * 13 12 10 15 15 C 1.50707 * 109.46705 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00415 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99665 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00052 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46949 * 60.00337 * 19 17 15 21 21 H 1.48496 * 109.47010 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47084 * 300.00311 * 19 17 15 23 23 N 1.32318 * 119.63905 * 359.72765 * 3 2 1 24 24 H 1.08996 * 109.47352 * 299.99708 * 1 2 3 25 25 H 1.08999 * 109.47144 * 59.99732 * 1 2 3 26 26 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.36472 * 359.96291 * 4 3 2 28 28 H 1.08004 * 120.71679 * 180.02562 * 5 4 3 29 29 H 1.08006 * 120.39044 * 179.97438 * 6 5 4 30 30 H 0.96996 * 119.99579 * 0.02562 * 8 7 6 31 31 H 0.96997 * 120.00115 * 0.02562 * 9 8 7 32 32 H 0.97000 * 119.99878 * 359.97438 * 12 10 9 33 33 H 1.08999 * 109.47355 * 299.99362 * 13 12 10 34 34 H 1.09004 * 109.47483 * 59.99944 * 13 12 10 35 35 H 1.09002 * 109.47361 * 299.99778 * 14 13 12 36 36 H 1.08999 * 109.47096 * 60.00345 * 14 13 12 37 37 H 0.96997 * 119.99883 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4313 1.2727 0.0005 5 6 4.0526 2.5116 0.0000 6 6 3.2623 3.6489 -0.0005 7 6 1.8790 3.5139 -0.0010 8 7 1.0769 4.6492 -0.0010 9 7 -0.3182 4.5211 -0.0010 10 6 -1.0959 5.6218 -0.0015 11 8 -2.3067 5.5107 -0.0020 12 7 -0.5315 6.8458 -0.0026 13 6 -1.3769 8.0422 -0.0026 14 6 -0.4930 9.2911 -0.0032 15 6 -1.3628 10.5219 -0.0039 16 1 -2.4382 10.4232 -0.0034 17 6 -0.7853 11.7740 -0.0040 18 7 0.5243 11.8942 -0.0041 19 14 -1.8632 13.2996 -0.0055 20 1 -2.7214 13.3005 1.2064 21 1 -1.0054 14.5118 -0.0060 22 1 -2.7197 13.2994 -1.2185 23 7 1.3173 2.3140 -0.0055 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0195 0.3670 0.0016 28 1 5.1299 2.5884 0.0000 29 1 3.7156 4.6292 -0.0005 30 1 1.4832 5.5300 -0.0010 31 1 -0.7243 3.6403 -0.0006 32 1 0.4345 6.9344 -0.0026 33 1 -2.0068 8.0420 -0.8921 34 1 -2.0056 8.0429 0.8879 35 1 0.1366 9.2912 0.8865 36 1 0.1359 9.2906 -0.8935 37 1 0.9305 12.7750 -0.0046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273148590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:55 Heat of formation + Delta-G solvation = -14.750823 kcal Electronic energy + Delta-G solvation = -20800.410341 eV Core-core repulsion = 17385.874622 eV Total energy + Delta-G solvation = -3414.535718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.74812 -41.08547 -39.15672 -37.21337 -36.69732 -34.80233 -33.38733 -32.78567 -31.30421 -29.76218 -27.75621 -26.75952 -24.27458 -23.85592 -23.17244 -22.06280 -20.23380 -19.81372 -18.58961 -18.45581 -17.19036 -17.06983 -16.84632 -16.82957 -16.56739 -16.32234 -16.10479 -15.35196 -15.33710 -14.94177 -14.79009 -14.27842 -14.13346 -13.23095 -13.16483 -13.11287 -12.91038 -12.65163 -12.54460 -12.26447 -11.94738 -11.85831 -11.57201 -11.34769 -10.87579 -10.76879 -10.59739 -10.26701 -9.86928 -8.45292 -8.23381 -6.33107 0.34611 0.43947 0.85817 1.43406 1.45095 1.52933 1.89119 1.93797 2.20354 2.43057 2.87568 3.11909 3.12014 3.94983 4.13179 4.26527 4.40742 4.41618 4.44810 4.47099 4.50549 4.62171 4.77736 4.85357 5.05040 5.16193 5.20220 5.39117 5.45649 5.57551 5.59133 5.75921 5.85051 6.16066 6.24206 6.28840 6.78049 6.81070 7.16600 7.35267 7.37631 8.88211 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031731 B = 0.002913 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.202909 B = 9610.453712 C =10466.907511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.317 6.317 3 C 0.343 3.657 4 C -0.250 4.250 5 C 0.011 3.989 6 C -0.262 4.262 7 C 0.423 3.577 8 N -0.519 5.519 9 N -0.521 5.521 10 C 0.708 3.292 11 O -0.622 6.622 12 N -0.727 5.727 13 C 0.157 3.843 14 C 0.024 3.976 15 C -0.548 4.548 16 H 0.059 0.941 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.963 3.037 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.269 1.269 23 N -0.618 5.618 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.122 0.878 27 H 0.156 0.844 28 H 0.182 0.818 29 H 0.163 0.837 30 H 0.441 0.559 31 H 0.439 0.561 32 H 0.402 0.598 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.011 0.989 36 H 0.011 0.989 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.503 -21.514 0.027 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.224 6.224 3 C 0.164 3.836 4 C -0.273 4.273 5 C -0.014 4.014 6 C -0.287 4.287 7 C 0.188 3.812 8 N -0.255 5.255 9 N -0.274 5.274 10 C 0.407 3.593 11 O -0.500 6.500 12 N -0.383 5.383 13 C 0.033 3.967 14 C -0.014 4.014 15 C -0.586 4.586 16 H 0.077 0.923 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.787 3.213 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.194 1.194 23 N -0.353 5.353 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.140 0.860 27 H 0.174 0.826 28 H 0.199 0.801 29 H 0.180 0.820 30 H 0.287 0.713 31 H 0.284 0.716 32 H 0.238 0.762 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.776 -21.623 0.020 22.979 hybrid contribution 0.325 1.094 0.002 1.141 sum 8.101 -20.530 0.022 22.070 Atomic orbital electron populations 1.22983 0.76376 1.04497 1.01862 1.86243 1.23858 1.24566 1.87745 1.19754 0.89986 0.83246 0.90580 1.21132 0.90884 1.01035 1.14221 1.21540 1.01860 0.89257 0.88781 1.21400 0.89989 1.02600 1.14747 1.17995 0.87875 0.84080 0.91218 1.43314 0.92603 1.07064 1.82519 1.44194 0.94296 1.08543 1.80370 1.15805 0.84385 0.80671 0.78428 1.90962 1.12772 1.85062 1.61174 1.45198 1.10512 1.04144 1.78479 1.21204 0.93007 0.82311 1.00160 1.19134 0.94874 0.90756 0.96591 1.21430 0.93689 0.91831 1.51653 0.92255 1.25824 0.96361 1.02353 0.94432 1.70034 1.10686 1.24793 1.50909 0.85533 0.78568 0.78090 0.79076 1.19429 1.20640 1.19442 1.66328 1.42072 0.98217 1.28650 0.92959 0.92966 0.86016 0.82608 0.80119 0.81959 0.71306 0.71586 0.76163 0.93295 0.93303 0.97024 0.97030 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.38 113.37 1.18 1.80 16 2 O -0.32 -6.52 10.47 -89.92 -0.94 -7.46 16 3 C 0.34 7.34 7.48 84.75 0.63 7.98 16 4 C -0.25 -3.98 10.04 22.48 0.23 -3.75 16 5 C 0.01 0.13 10.16 22.42 0.23 0.36 16 6 C -0.26 -3.97 9.93 22.51 0.22 -3.74 16 7 C 0.42 8.96 7.59 133.00 1.01 9.97 16 8 N -0.52 -11.44 6.42 -55.48 -0.36 -11.80 16 9 N -0.52 -14.44 6.29 -184.74 -1.16 -15.60 16 10 C 0.71 24.75 8.68 179.05 1.55 26.30 16 11 O -0.62 -26.76 17.18 -4.00 -0.07 -26.83 16 12 N -0.73 -24.77 5.52 -478.52 -2.64 -27.41 16 13 C 0.16 6.60 5.61 86.38 0.48 7.08 16 14 C 0.02 1.17 5.09 29.85 0.15 1.32 16 15 C -0.55 -29.92 9.11 25.60 0.23 -29.68 16 16 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 17 C 0.01 0.51 5.46 84.66 0.46 0.97 16 18 N -0.92 -52.93 13.29 21.45 0.28 -52.65 16 19 Si 0.96 42.92 29.54 68.60 2.03 44.94 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 N -0.62 -14.44 8.22 -306.33 -2.52 -16.96 16 24 H 0.05 0.92 8.11 -2.39 -0.02 0.90 16 25 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 26 H 0.12 1.27 8.14 -2.38 -0.02 1.26 16 27 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 28 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 29 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 30 H 0.44 8.08 6.69 -213.33 -1.43 6.65 16 31 H 0.44 12.08 8.05 -213.33 -1.72 10.36 16 32 H 0.40 11.34 6.39 -92.71 -0.59 10.75 16 33 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -69.79 326.04 -1.61 -71.40 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -2.62 Total: 23.76 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 6.38 Total: 18.61 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -6.39 Total: -124.41 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -1.01 Total: -34.29 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -69.79 -1.61 -71.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273148590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.646 kcal (2) G-P(sol) polarization free energy of solvation -69.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds