Wall clock time and date at job start Fri Apr 10 2020 17:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47280 * 2 1 4 4 C 1.52996 * 109.47255 * 240.00229 * 2 1 3 5 5 S 1.81395 * 109.47247 * 64.99661 * 4 2 1 6 6 O 1.42096 * 109.47267 * 296.38947 * 5 4 2 7 7 C 1.81403 * 103.00265 * 179.97438 * 5 4 2 8 8 C 1.53004 * 109.47185 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.46885 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47122 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99646 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00488 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99502 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00426 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46835 * 89.99985 * 14 12 10 16 16 H 1.48494 * 109.47063 * 210.00052 * 14 12 10 17 17 H 1.48505 * 109.46899 * 329.99922 * 14 12 10 18 18 C 1.50706 * 109.47362 * 120.00113 * 2 1 3 19 19 C 1.38234 * 120.00196 * 240.00342 * 18 2 1 20 20 C 1.38235 * 119.99814 * 179.97438 * 19 18 2 21 21 C 1.38230 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.38243 * 120.00092 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99618 * 359.97438 * 22 21 20 24 24 H 1.08994 * 109.47197 * 299.99426 * 1 2 3 25 25 H 1.08991 * 109.46972 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.47360 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47489 * 184.99928 * 4 2 1 28 28 H 1.09007 * 109.47236 * 305.00062 * 4 2 1 29 29 H 1.09000 * 109.47310 * 300.00728 * 7 5 4 30 30 H 1.08998 * 109.46979 * 60.00382 * 7 5 4 31 31 H 1.08996 * 109.47099 * 300.00515 * 8 7 5 32 32 H 1.08998 * 109.46876 * 60.00287 * 8 7 5 33 33 H 1.08996 * 109.47607 * 300.00124 * 9 8 7 34 34 H 1.08998 * 109.47195 * 60.00403 * 9 8 7 35 35 H 0.97005 * 119.99947 * 180.02562 * 13 12 10 36 36 H 1.08000 * 119.99516 * 0.24808 * 19 18 2 37 37 H 1.08000 * 119.99297 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00350 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.00235 * 179.97438 * 22 21 20 40 40 H 1.08005 * 119.99804 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 1.5601 0.2156 -2.7266 6 8 0.1431 0.2461 -2.8285 7 6 2.2431 -0.7796 -4.0807 8 6 1.9185 -0.1118 -5.4185 9 6 2.4940 -0.9516 -6.5605 10 6 2.1749 -0.2935 -7.8782 11 1 1.6170 0.6311 -7.8989 12 6 2.5943 -0.8721 -9.0573 13 7 3.2723 -1.9988 -9.0321 14 14 2.1981 -0.0568 -10.6906 15 1 3.2900 0.8824 -11.0526 16 1 2.0690 -1.0955 -11.7439 17 1 0.9204 0.6909 -10.5735 18 6 2.0324 -0.7104 1.2305 19 6 2.8271 -0.0387 2.1404 20 6 3.2874 -0.6903 3.2693 21 6 2.9527 -2.0134 3.4886 22 6 2.1571 -2.6849 2.5791 23 6 1.6959 -2.0330 1.4507 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1263 -0.7994 -1.2056 28 1 1.6054 -1.7198 -1.2952 29 1 3.3243 -0.8561 -3.9659 30 1 1.8037 -1.7769 -4.0560 31 1 0.8374 -0.0350 -5.5334 32 1 2.3582 0.8853 -5.4429 33 1 3.5752 -1.0287 -6.4458 34 1 2.0540 -1.9485 -6.5360 35 1 3.5677 -2.4058 -9.8616 36 1 3.0846 0.9965 1.9716 37 1 3.9086 -0.1654 3.9800 38 1 3.3127 -2.5226 4.3703 39 1 1.8959 -3.7188 2.7501 40 1 1.0746 -2.5578 0.7400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279888329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:59 Heat of formation + Delta-G solvation = -40.676797 kcal Electronic energy + Delta-G solvation = -18642.411654 eV Core-core repulsion = 15740.752165 eV Total energy + Delta-G solvation = -2901.659489 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.124 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.67412 -35.78716 -35.22244 -34.40925 -32.01769 -31.12693 -29.91430 -27.79424 -27.09368 -23.76621 -23.28577 -22.68695 -20.57952 -19.97545 -17.35144 -17.13642 -16.29788 -15.90235 -15.40371 -14.90753 -14.88024 -14.42814 -14.31585 -14.12715 -13.53557 -13.49680 -13.16648 -12.88003 -12.43175 -12.25583 -12.19840 -11.86212 -11.53574 -11.45431 -11.35326 -11.18984 -10.88562 -10.85321 -10.74824 -10.59436 -9.92532 -9.77816 -9.25064 -9.13041 -9.06243 -8.83774 -8.35774 -7.95027 -6.00710 -4.03334 1.13597 1.19187 1.73682 2.88073 3.32161 3.38310 3.42519 3.57376 4.01308 4.46060 4.48669 4.56584 4.78871 4.83743 4.92651 4.94406 5.23323 5.28624 5.31599 5.34982 5.47774 5.52181 5.62374 5.63968 5.77835 5.83711 5.90100 5.98768 6.21203 6.21986 6.29414 6.33380 6.47387 6.52396 6.71461 6.79937 7.05340 7.65812 7.78485 7.98835 8.40680 9.03740 9.60915 11.10596 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.038629 B = 0.002736 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.675164 B =10229.991372 C =10570.996934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.027 4.027 3 H 0.088 0.912 4 C -0.446 4.446 5 S 1.224 4.776 6 O -0.847 6.847 7 C -0.430 4.430 8 C -0.093 4.093 9 C 0.026 3.974 10 C -0.522 4.522 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.273 1.273 18 C -0.067 4.067 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.113 4.113 24 H 0.056 0.944 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 4.072 25.067 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.046 4.046 3 H 0.106 0.894 4 C -0.582 4.582 5 S 1.425 4.575 6 O -0.842 6.842 7 C -0.569 4.569 8 C -0.131 4.131 9 C -0.012 4.012 10 C -0.560 4.560 11 H 0.075 0.925 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.068 4.068 19 C -0.136 4.136 20 C -0.138 4.138 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.132 4.132 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.072 0.928 27 H 0.134 0.866 28 H 0.103 0.897 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.225 4.781 24.921 25.405 hybrid contribution -0.857 -2.092 -0.929 2.444 sum 0.368 2.689 23.992 24.145 Atomic orbital electron populations 1.22256 0.93769 1.02917 1.03801 1.19735 0.96207 0.98595 0.90073 0.89407 1.27829 1.08252 1.10038 1.12108 1.70339 0.94556 1.06704 0.85931 1.93074 1.27315 1.80263 1.83544 1.27625 1.08753 1.09913 1.10602 1.21303 1.00827 0.99355 0.91662 1.19095 0.96165 0.94777 0.91166 1.21281 1.35043 1.08499 0.91212 0.92526 1.25036 0.95194 0.94961 0.99323 1.69969 1.38084 1.18245 1.27311 0.86578 0.78826 0.79098 0.83434 1.20553 1.21251 1.19829 1.19914 0.96913 0.94219 0.95770 1.21106 0.98107 1.00002 0.94419 1.21135 1.00081 0.94950 0.97606 1.21130 0.99029 0.95012 0.99485 1.21150 0.98115 0.99842 0.94656 1.21029 1.00042 0.94547 0.97534 0.92518 0.89094 0.92803 0.86642 0.89721 0.87013 0.90214 0.92819 0.92131 0.96292 0.96793 0.92996 0.85812 0.86144 0.86337 0.86280 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 8.66 37.16 0.32 -1.65 16 2 C -0.03 -0.26 2.56 -91.77 -0.23 -0.50 16 3 H 0.09 0.67 7.88 -51.93 -0.41 0.26 16 4 C -0.45 -4.63 5.11 37.16 0.19 -4.44 16 5 S 1.22 15.08 12.97 -107.50 -1.39 13.68 16 6 O -0.85 -15.25 15.46 -35.23 -0.54 -15.79 16 7 C -0.43 -6.80 5.92 37.16 0.22 -6.58 16 8 C -0.09 -1.89 5.16 -26.73 -0.14 -2.03 16 9 C 0.03 0.69 4.97 -27.89 -0.14 0.55 16 10 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 11 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 14 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 C -0.07 -0.67 4.78 -104.62 -0.50 -1.17 16 19 C -0.12 -1.04 9.67 -39.58 -0.38 -1.42 16 20 C -0.12 -0.99 10.05 -39.59 -0.40 -1.38 16 21 C -0.13 -1.09 10.05 -39.58 -0.40 -1.48 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.11 -1.17 8.76 -39.58 -0.35 -1.52 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 1.24 5.35 -51.93 -0.28 0.96 16 26 H 0.05 0.65 7.38 -51.93 -0.38 0.27 16 27 H 0.12 0.97 8.14 -51.92 -0.42 0.55 16 28 H 0.08 0.99 7.58 -51.92 -0.39 0.59 16 29 H 0.11 1.51 8.14 -51.92 -0.42 1.08 16 30 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.12 0.83 7.95 -52.49 -0.42 0.41 16 37 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.12 1.21 7.16 -52.48 -0.38 0.84 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -35.42 341.55 -10.14 -45.56 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.45 Total: -2.07 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: -2.61 Total: -36.87 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.74 Total: -26.45 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.54 Total: -15.79 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 15.08 SS G_CDS: -1.39 Total: 13.68 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.42 -10.14 -45.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279888329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.879 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds