Wall clock time and date at job start Fri Apr 10 2020 17:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47280 * 2 1 4 4 C 1.52996 * 109.47255 * 240.00229 * 2 1 3 5 5 S 1.81395 * 109.47247 * 64.99661 * 4 2 1 6 6 O 1.42096 * 109.47267 * 296.38947 * 5 4 2 7 7 C 1.81403 * 103.00265 * 179.97438 * 5 4 2 8 8 C 1.53004 * 109.47185 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.46885 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47122 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99646 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00488 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99502 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00426 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46835 * 89.99985 * 14 12 10 16 16 H 1.48494 * 109.47063 * 210.00052 * 14 12 10 17 17 H 1.48505 * 109.46899 * 329.99922 * 14 12 10 18 18 C 1.50706 * 109.47362 * 120.00113 * 2 1 3 19 19 C 1.38234 * 120.00196 * 240.00342 * 18 2 1 20 20 C 1.38235 * 119.99814 * 179.97438 * 19 18 2 21 21 C 1.38230 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.38243 * 120.00092 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99618 * 359.97438 * 22 21 20 24 24 H 1.08994 * 109.47197 * 299.99426 * 1 2 3 25 25 H 1.08991 * 109.46972 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.47360 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47489 * 184.99928 * 4 2 1 28 28 H 1.09007 * 109.47236 * 305.00062 * 4 2 1 29 29 H 1.09000 * 109.47310 * 300.00728 * 7 5 4 30 30 H 1.08998 * 109.46979 * 60.00382 * 7 5 4 31 31 H 1.08996 * 109.47099 * 300.00515 * 8 7 5 32 32 H 1.08998 * 109.46876 * 60.00287 * 8 7 5 33 33 H 1.08996 * 109.47607 * 300.00124 * 9 8 7 34 34 H 1.08998 * 109.47195 * 60.00403 * 9 8 7 35 35 H 0.97005 * 119.99947 * 180.02562 * 13 12 10 36 36 H 1.08000 * 119.99516 * 0.24808 * 19 18 2 37 37 H 1.08000 * 119.99297 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00350 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.00235 * 179.97438 * 22 21 20 40 40 H 1.08005 * 119.99804 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 1.5601 0.2156 -2.7266 6 8 0.1431 0.2461 -2.8285 7 6 2.2431 -0.7796 -4.0807 8 6 1.9185 -0.1118 -5.4185 9 6 2.4940 -0.9516 -6.5605 10 6 2.1749 -0.2935 -7.8782 11 1 1.6170 0.6311 -7.8989 12 6 2.5943 -0.8721 -9.0573 13 7 3.2723 -1.9988 -9.0321 14 14 2.1981 -0.0568 -10.6906 15 1 3.2900 0.8824 -11.0526 16 1 2.0690 -1.0955 -11.7439 17 1 0.9204 0.6909 -10.5735 18 6 2.0324 -0.7104 1.2305 19 6 2.8271 -0.0387 2.1404 20 6 3.2874 -0.6903 3.2693 21 6 2.9527 -2.0134 3.4886 22 6 2.1571 -2.6849 2.5791 23 6 1.6959 -2.0330 1.4507 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1263 -0.7994 -1.2056 28 1 1.6054 -1.7198 -1.2952 29 1 3.3243 -0.8561 -3.9659 30 1 1.8037 -1.7769 -4.0560 31 1 0.8374 -0.0350 -5.5334 32 1 2.3582 0.8853 -5.4429 33 1 3.5752 -1.0287 -6.4458 34 1 2.0540 -1.9485 -6.5360 35 1 3.5677 -2.4058 -9.8616 36 1 3.0846 0.9965 1.9716 37 1 3.9086 -0.1654 3.9800 38 1 3.3127 -2.5226 4.3703 39 1 1.8959 -3.7188 2.7501 40 1 1.0746 -2.5578 0.7400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279888329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:59 Heat of formation + Delta-G solvation = -61.773936 kcal Electronic energy + Delta-G solvation = -18643.326495 eV Core-core repulsion = 15740.752165 eV Total energy + Delta-G solvation = -2902.574330 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.124 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.34683 -36.87797 -36.37261 -36.13029 -34.02170 -31.76787 -30.62486 -29.49603 -28.23479 -25.38499 -24.34183 -23.34654 -22.14906 -20.94360 -18.66585 -18.24488 -17.84013 -16.78627 -16.55980 -16.27734 -16.12202 -15.67845 -15.44961 -15.09132 -14.56290 -14.30121 -14.18483 -14.05073 -13.92427 -13.76956 -13.43774 -13.07292 -12.96950 -12.67747 -12.51073 -12.47223 -12.25061 -12.18504 -12.02879 -11.63656 -11.58985 -11.53376 -11.28547 -10.57499 -10.53729 -9.78610 -9.58682 -9.11476 -8.22040 -6.33732 0.42663 0.53386 0.70129 1.39173 1.41075 1.52178 1.80994 2.40071 2.86644 2.95905 3.10823 3.71690 3.83145 4.05491 4.10408 4.16065 4.19437 4.21368 4.31702 4.47059 4.56564 4.63463 4.65693 4.69068 4.84701 4.86889 4.98520 5.13500 5.15503 5.16474 5.19907 5.23393 5.34041 5.49134 5.62343 5.66468 5.69072 5.77580 5.82562 6.16424 6.22009 6.83334 7.35837 8.89669 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.038629 B = 0.002736 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.675164 B =10229.991372 C =10570.996934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.027 4.027 3 H 0.119 0.881 4 C -0.439 4.439 5 S 1.297 4.703 6 O -0.903 6.903 7 C -0.440 4.440 8 C -0.087 4.087 9 C 0.026 3.974 10 C -0.547 4.547 11 H 0.061 0.939 12 C -0.002 4.002 13 N -0.935 5.935 14 Si 0.966 3.034 15 H -0.265 1.265 16 H -0.283 1.283 17 H -0.266 1.266 18 C -0.079 4.079 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.134 4.134 22 C -0.133 4.133 23 C -0.135 4.135 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.146 0.854 28 H 0.070 0.930 29 H 0.139 0.861 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.007 0.993 34 H -0.022 1.022 35 H 0.264 0.736 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 5.871 26.547 27.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.046 4.046 3 H 0.137 0.863 4 C -0.577 4.577 5 S 1.498 4.502 6 O -0.898 6.898 7 C -0.577 4.577 8 C -0.126 4.126 9 C -0.012 4.012 10 C -0.585 4.585 11 H 0.079 0.921 12 C -0.200 4.200 13 N -0.575 5.575 14 Si 0.790 3.210 15 H -0.190 1.190 16 H -0.209 1.209 17 H -0.191 1.191 18 C -0.080 4.080 19 C -0.139 4.139 20 C -0.141 4.141 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.153 4.153 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.164 0.836 28 H 0.089 0.911 29 H 0.157 0.843 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.025 0.975 34 H -0.004 1.004 35 H 0.073 0.927 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.483 6.585 26.371 27.294 hybrid contribution -1.229 -2.716 -1.225 3.223 sum 1.253 3.870 25.146 25.473 Atomic orbital electron populations 1.22232 0.95461 1.01776 1.03313 1.19800 0.94781 1.00266 0.89735 0.86310 1.27774 1.10129 1.08920 1.10877 1.69684 0.91574 1.04514 0.84385 1.92972 1.30995 1.81372 1.84501 1.27702 1.10897 1.08957 1.10131 1.21102 0.99147 1.00084 0.92226 1.19029 0.95318 0.93846 0.93009 1.21761 1.35163 1.08935 0.92681 0.92056 1.26019 0.94849 0.95530 1.03579 1.70101 1.39089 1.19749 1.28553 0.85428 0.79134 0.78214 0.78181 1.18980 1.20885 1.19062 1.19918 0.97843 0.94082 0.96173 1.21419 0.97294 1.01123 0.94031 1.21500 0.99848 0.94928 0.97844 1.21453 0.98413 0.95460 0.99818 1.21360 0.98493 1.00557 0.94676 1.21117 1.00790 0.95271 0.98106 0.91305 0.91147 0.94358 0.83570 0.91146 0.84304 0.92357 0.94964 0.89532 0.97496 1.00396 0.92725 0.83391 0.83696 0.84370 0.85387 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 8.66 71.98 0.62 -3.24 16 2 C -0.03 -0.47 2.56 -11.54 -0.03 -0.50 16 3 H 0.12 1.37 7.88 -2.39 -0.02 1.35 16 4 C -0.44 -8.33 5.11 71.98 0.37 -7.96 16 5 S 1.30 30.52 12.97 -56.49 -0.73 29.79 16 6 O -0.90 -32.76 15.46 -148.98 -2.30 -35.06 16 7 C -0.44 -13.85 5.92 71.98 0.43 -13.42 16 8 C -0.09 -3.61 5.16 30.59 0.16 -3.45 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.55 -31.90 9.11 25.60 0.23 -31.66 16 11 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 12 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 13 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 14 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 15 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 C -0.08 -1.42 4.78 -19.86 -0.09 -1.51 16 19 C -0.12 -1.73 9.67 22.27 0.22 -1.51 16 20 C -0.12 -1.64 10.05 22.27 0.22 -1.42 16 21 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 22 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 23 C -0.13 -2.70 8.76 22.27 0.20 -2.51 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.91 5.35 -2.39 -0.01 1.90 16 26 H 0.04 0.95 7.38 -2.38 -0.02 0.94 16 27 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 1.61 7.58 -2.39 -0.02 1.59 16 29 H 0.14 3.54 8.14 -2.39 -0.02 3.52 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 34 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 35 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 36 H 0.15 1.33 7.95 -2.91 -0.02 1.30 16 37 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 38 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.11 2.27 7.16 -2.91 -0.02 2.25 16 Total: -1.00 -79.09 341.55 3.64 -75.45 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.99 Total: 9.53 kcal Atomic # 6 Polarization: -72.49 SS G_CDS: 3.38 Total: -69.11 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.28 Total: -57.48 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -2.30 Total: -35.06 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 30.52 SS G_CDS: -0.73 Total: 29.79 kcal Total: -79.09 3.64 -75.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279888329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.677 kcal (2) G-P(sol) polarization free energy of solvation -79.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds