Wall clock time and date at job start Fri Apr 10 2020 17:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35457 * 116.99643 * 2 1 4 4 N 1.32323 * 119.16338 * 359.97438 * 3 2 1 5 5 C 1.32463 * 120.93154 * 180.02562 * 4 3 2 6 6 C 1.38200 * 119.25851 * 359.97438 * 5 4 3 7 7 C 1.39514 * 118.45528 * 0.02562 * 6 5 4 8 8 N 1.39006 * 120.48575 * 179.97438 * 7 6 5 9 9 C 1.34779 * 119.99823 * 174.74915 * 8 7 6 10 10 O 1.21577 * 119.99683 * 4.79144 * 9 8 7 11 11 N 1.34775 * 120.00083 * 184.78537 * 9 8 7 12 12 C 1.46501 * 119.99686 * 0.02562 * 11 9 8 13 13 C 1.46498 * 120.00112 * 180.02562 * 11 9 8 14 14 H 1.08999 * 109.46708 * 359.97438 * 13 11 9 15 15 C 1.53003 * 109.47105 * 240.00394 * 13 11 9 16 16 C 1.50700 * 109.47033 * 120.00194 * 13 11 9 17 17 H 1.07997 * 120.00160 * 0.02562 * 16 13 11 18 18 C 1.37881 * 119.99744 * 180.02562 * 16 13 11 19 19 N 1.31509 * 119.99907 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99659 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.47359 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47189 * 119.99962 * 20 18 16 23 23 H 1.48497 * 109.46790 * 239.99728 * 20 18 16 24 24 N 1.32264 * 119.15065 * 180.27456 * 3 2 1 25 25 H 1.08994 * 109.46822 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46931 * 300.00533 * 1 2 3 27 27 H 1.09000 * 109.46625 * 60.00061 * 1 2 3 28 28 H 1.08005 * 120.37013 * 180.02562 * 5 4 3 29 29 H 1.07992 * 120.77392 * 179.97438 * 6 5 4 30 30 H 0.96996 * 119.99715 * 354.46431 * 8 7 6 31 31 H 1.08996 * 109.47096 * 89.99941 * 12 11 9 32 32 H 1.09005 * 109.46852 * 209.99646 * 12 11 9 33 33 H 1.09004 * 109.47218 * 329.99395 * 12 11 9 34 34 H 1.08997 * 109.46831 * 180.02562 * 15 13 11 35 35 H 1.09007 * 109.46615 * 299.99922 * 15 13 11 36 36 H 1.08997 * 109.46918 * 59.99830 * 15 13 11 37 37 H 0.97005 * 119.99779 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 1.3071 2.3060 -0.0005 5 6 1.8717 3.5043 -0.0010 6 6 3.2503 3.6014 -0.0005 7 6 3.9996 2.4246 0.0000 8 7 5.3888 2.4731 0.0000 9 6 6.1028 1.3350 0.1074 10 8 5.5352 0.2600 0.1164 11 7 7.4460 1.3888 0.2045 12 6 8.1298 2.6844 0.1940 13 6 8.2221 0.1518 0.3206 14 1 7.5463 -0.7033 0.3114 15 6 9.0093 0.1648 1.6326 16 6 9.1795 0.0488 -0.8386 17 1 9.2073 0.8271 -1.5868 18 6 10.0199 -1.0393 -0.9441 19 7 9.9863 -1.9868 -0.0327 20 14 11.2071 -1.1666 -2.3807 21 1 11.0496 0.0199 -3.2596 22 1 12.5997 -1.2224 -1.8685 23 1 10.9151 -2.3988 -3.1562 24 7 3.3657 1.2567 -0.0055 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.2615 4.3955 -0.0010 29 1 3.7363 4.5658 -0.0013 30 1 5.8443 3.3256 -0.0814 31 1 8.2234 3.0541 1.2151 32 1 9.1218 2.5681 -0.2426 33 1 7.5531 3.3949 -0.3983 34 1 9.5871 -0.7554 1.7187 35 1 9.6851 1.0200 1.6423 36 1 8.3168 0.2393 2.4710 37 1 10.5778 -2.7521 -0.1067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282730893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:09 Heat of formation + Delta-G solvation = -7.716402 kcal Electronic energy + Delta-G solvation = -21885.954694 eV Core-core repulsion = 18471.724011 eV Total energy + Delta-G solvation = -3414.230683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.41220 -41.12478 -39.31255 -37.39237 -36.24995 -34.87134 -33.96219 -31.98813 -30.78391 -28.41797 -27.66620 -27.29979 -25.66147 -24.59095 -23.08572 -21.13689 -20.26207 -19.03818 -18.44503 -18.27878 -17.56089 -17.44061 -16.88118 -16.56778 -16.34971 -15.90006 -15.48353 -15.09186 -14.89451 -14.60388 -14.40968 -14.05854 -13.54676 -13.13370 -12.93352 -12.86371 -12.77924 -12.67522 -12.60246 -12.26020 -12.19387 -12.10073 -11.99246 -11.29174 -11.14970 -10.73726 -10.53404 -9.95867 -9.70373 -9.27420 -8.13737 -6.30306 0.00254 0.23227 1.29750 1.41582 1.44226 1.54893 1.79282 2.16737 2.42308 2.89688 2.93120 3.14729 3.21203 3.67698 3.90385 4.31662 4.35534 4.41017 4.41810 4.48563 4.68968 4.71011 4.73833 4.89974 4.97894 5.02796 5.06459 5.33847 5.43407 5.51362 5.63407 5.69909 5.95815 6.14165 6.17416 6.31279 6.77515 6.93935 7.25851 7.37906 7.63603 8.91120 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025381 B = 0.004142 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.926413 B = 6758.850808 C = 7250.911830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.322 6.322 3 C 0.504 3.496 4 N -0.593 5.593 5 C 0.205 3.795 6 C -0.280 4.280 7 C 0.433 3.567 8 N -0.646 5.646 9 C 0.678 3.322 10 O -0.586 6.586 11 N -0.610 5.610 12 C 0.076 3.924 13 C 0.277 3.723 14 H 0.005 0.995 15 C -0.130 4.130 16 C -0.537 4.537 17 H 0.064 0.936 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.967 3.033 21 H -0.263 1.263 22 H -0.273 1.273 23 H -0.289 1.289 24 N -0.578 5.578 25 H 0.122 0.878 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.229 0.771 29 H 0.200 0.800 30 H 0.436 0.564 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.016 0.984 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.666 17.588 0.530 22.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.224 6.224 3 C 0.200 3.800 4 N -0.327 5.327 5 C 0.043 3.957 6 C -0.306 4.306 7 C 0.193 3.807 8 N -0.299 5.299 9 C 0.378 3.622 10 O -0.461 6.461 11 N -0.345 5.345 12 C -0.066 4.066 13 C 0.175 3.825 14 H 0.023 0.977 15 C -0.189 4.189 16 C -0.575 4.575 17 H 0.082 0.918 18 C -0.186 4.186 19 N -0.557 5.557 20 Si 0.792 3.208 21 H -0.187 1.187 22 H -0.198 1.198 23 H -0.215 1.215 24 N -0.312 5.312 25 H 0.140 0.860 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.246 0.754 29 H 0.217 0.783 30 H 0.279 0.721 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.212 15.409 0.605 20.971 hybrid contribution 1.254 0.239 -0.608 1.414 sum -12.958 15.649 -0.003 20.317 Atomic orbital electron populations 1.23224 0.73575 1.05026 1.03229 1.86095 1.25571 1.23746 1.86994 1.20609 0.84982 0.85655 0.88725 1.68180 1.40705 0.99388 1.24449 1.23628 0.92098 0.94717 0.85278 1.22507 0.96010 0.98646 1.13459 1.18581 0.84484 0.89066 0.88606 1.42789 1.02823 1.10471 1.73865 1.16384 0.82663 0.84063 0.79045 1.91010 1.69918 1.28981 1.56157 1.47540 1.02907 1.09951 1.74102 1.21885 0.99413 0.82805 1.02466 1.18479 0.88769 0.80790 0.94465 0.97698 1.21868 0.99131 1.02504 0.95369 1.21612 1.19960 1.07052 1.08902 0.91767 1.25758 0.98962 0.94965 0.98905 1.70043 1.39439 1.10482 1.35759 0.85368 0.78493 0.77954 0.78935 1.18698 1.19822 1.21506 1.67247 1.09254 1.30677 1.23984 0.85992 0.91276 0.91284 0.75441 0.78311 0.72094 0.91191 0.90464 0.89408 0.91360 0.92973 0.96454 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.95 10.36 113.37 1.17 2.12 16 2 O -0.32 -11.30 10.56 -87.55 -0.92 -12.23 16 3 C 0.50 17.84 8.49 180.58 1.53 19.38 16 4 N -0.59 -15.36 9.22 -313.71 -2.89 -18.26 16 5 C 0.21 3.48 11.29 84.59 0.95 4.43 16 6 C -0.28 -5.12 10.03 22.57 0.23 -4.89 16 7 C 0.43 13.71 7.45 133.01 0.99 14.70 16 8 N -0.65 -20.22 5.26 -321.77 -1.69 -21.91 16 9 C 0.68 30.24 8.24 179.05 1.48 31.72 16 10 O -0.59 -33.39 13.98 -3.96 -0.06 -33.45 16 11 N -0.61 -26.15 2.75 -844.84 -2.33 -28.48 16 12 C 0.08 2.22 9.24 127.77 1.18 3.40 16 13 C 0.28 14.81 2.64 44.25 0.12 14.92 16 14 H 0.01 0.33 6.90 -2.39 -0.02 0.31 16 15 C -0.13 -6.37 8.97 71.98 0.65 -5.73 16 16 C -0.54 -29.40 7.99 25.60 0.20 -29.20 16 17 H 0.06 3.38 7.33 -2.91 -0.02 3.36 16 18 C 0.01 0.75 5.30 84.66 0.45 1.20 16 19 N -0.92 -53.88 11.32 21.45 0.24 -53.64 16 20 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 24 N -0.58 -23.96 8.07 -310.84 -2.51 -26.46 16 25 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 27 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 28 H 0.23 1.19 8.06 -2.91 -0.02 1.16 16 29 H 0.20 1.49 8.06 -2.91 -0.02 1.46 16 30 H 0.44 8.81 6.41 -92.71 -0.59 8.22 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 2.44 7.02 -2.38 -0.02 2.42 16 33 H 0.09 1.75 6.29 -2.38 -0.02 1.74 16 34 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 35 H 0.05 2.26 7.67 -2.38 -0.02 2.24 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 Total: -1.00 -86.70 314.73 1.33 -85.36 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.51 Total: 11.55 kcal Atomic # 6 Polarization: 43.11 SS G_CDS: 8.95 Total: 52.06 kcal Atomic # 7 Polarization: -139.57 SS G_CDS: -9.18 Total: -148.75 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -0.98 Total: -45.68 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -86.70 1.33 -85.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282730893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.648 kcal (2) G-P(sol) polarization free energy of solvation -86.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds