Wall clock time and date at job start Fri Apr 10 2020 17:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.47444 * 29.99805 * 3 2 1 5 5 C 1.53008 * 109.47438 * 270.00038 * 3 2 1 6 6 S 1.81397 * 109.46830 * 64.99798 * 5 3 2 7 7 C 1.81400 * 102.99804 * 180.02562 * 6 5 3 8 8 C 1.53010 * 109.47126 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47081 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47039 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99911 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99646 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00323 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99721 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47296 * 89.99625 * 14 12 10 16 16 H 1.48496 * 109.47063 * 210.00066 * 14 12 10 17 17 H 1.48507 * 109.46975 * 329.99678 * 14 12 10 18 18 C 1.50704 * 109.47338 * 150.00083 * 3 2 1 19 19 C 1.38235 * 119.99268 * 39.72516 * 18 3 2 20 20 C 1.38241 * 119.99624 * 179.78984 * 19 18 3 21 21 C 1.38241 * 119.99650 * 0.44085 * 20 19 18 22 22 C 1.38228 * 120.00136 * 359.81483 * 21 20 19 23 23 C 1.38231 * 120.00220 * 359.97437 * 22 21 20 24 24 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 25 25 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 26 26 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47264 * 185.00576 * 5 3 2 28 28 H 1.09000 * 109.46477 * 305.00136 * 5 3 2 29 29 H 1.08999 * 109.47339 * 300.00303 * 7 6 5 30 30 H 1.09005 * 109.47080 * 60.00294 * 7 6 5 31 31 H 1.08999 * 109.47272 * 300.00360 * 8 7 6 32 32 H 1.09004 * 109.46563 * 60.00630 * 8 7 6 33 33 H 1.09008 * 109.47269 * 300.00456 * 9 8 7 34 34 H 1.08995 * 109.47179 * 60.00174 * 9 8 7 35 35 H 0.97001 * 119.99851 * 180.02562 * 13 12 10 36 36 H 1.07997 * 120.00747 * 359.97438 * 19 18 3 37 37 H 1.07996 * 120.00510 * 180.27137 * 20 19 18 38 38 H 1.08001 * 119.99766 * 179.83383 * 21 20 19 39 39 H 1.07999 * 120.00200 * 180.02562 * 22 21 20 40 40 H 1.07995 * 120.00446 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7715 -1.4425 6 16 0.6064 1.9634 -2.2535 7 6 1.0532 2.5107 -3.9243 8 6 -0.2182 2.7201 -4.7494 9 6 0.1586 3.1811 -6.1587 10 6 -1.0937 3.3880 -6.9712 11 1 -2.0615 3.2090 -6.5267 12 6 -1.0037 3.8057 -8.2821 13 7 0.1749 4.0242 -8.8233 14 14 -2.5560 4.0629 -9.2890 15 1 -3.0199 5.4650 -9.1343 16 1 -2.2680 3.7918 -10.7204 17 1 -3.6141 3.1360 -8.8129 18 6 3.3386 1.2640 0.7104 19 6 4.1871 0.1882 0.5270 20 6 5.4076 0.1522 1.1752 21 6 5.7755 1.1877 2.0139 22 6 4.9247 2.2609 2.2014 23 6 3.7062 2.2990 1.5498 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.7413 2.7274 -1.4438 28 1 2.8099 1.0321 -1.9815 29 1 1.6061 3.4481 -3.8639 30 1 1.6744 1.7525 -4.4010 31 1 -0.7708 1.7825 -4.8098 32 1 -0.8398 3.4782 -4.2728 33 1 0.7114 4.1187 -6.0987 34 1 0.7800 2.4228 -6.6350 35 1 0.2381 4.3185 -9.7454 36 1 3.8979 -0.6227 -0.1250 37 1 6.0724 -0.6861 1.0285 38 1 6.7279 1.1583 2.5224 39 1 5.2123 3.0701 2.8563 40 1 3.0417 3.1377 1.6959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283386806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:18 Heat of formation + Delta-G solvation = -42.293754 kcal Electronic energy + Delta-G solvation = -18503.717890 eV Core-core repulsion = 15601.988284 eV Total energy + Delta-G solvation = -2901.729606 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.124 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.81640 -37.84119 -34.44831 -33.00215 -32.02108 -31.13528 -29.51902 -27.47516 -26.76081 -24.18871 -23.22650 -22.74462 -21.13338 -20.17620 -17.43904 -16.81948 -16.53416 -16.09512 -15.68215 -15.19239 -14.75211 -14.65316 -14.55804 -14.41914 -13.61012 -13.54615 -13.20228 -12.99973 -12.74498 -12.52953 -12.13164 -11.83909 -11.71241 -11.53293 -11.34523 -10.98683 -10.88837 -10.85638 -10.52048 -10.11366 -9.79581 -9.58213 -9.21877 -9.15300 -9.10931 -8.94348 -8.37397 -7.42930 -6.02296 -4.04899 1.02733 1.17557 1.85017 2.83229 3.31471 3.37558 3.41420 3.44705 3.65417 4.44777 4.55411 4.65970 4.72359 4.81510 4.90263 4.92815 5.17379 5.28448 5.32859 5.33622 5.38396 5.51680 5.54604 5.65202 5.68365 5.70847 5.81418 5.88069 6.14060 6.20451 6.27819 6.31521 6.55171 6.71442 6.73959 7.01508 7.03607 7.62891 7.75220 7.96676 8.38511 9.01615 9.59344 11.09086 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.032890 B = 0.002698 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.129419 B =10375.428808 C =10836.477910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.375 6.375 3 C 0.150 3.850 4 H 0.077 0.923 5 C -0.108 4.108 6 S -0.272 6.272 7 C -0.078 4.078 8 C -0.094 4.094 9 C 0.027 3.973 10 C -0.520 4.520 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.083 4.083 19 C -0.089 4.089 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.108 4.108 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.261 0.739 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.952 -6.137 22.918 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.293 6.293 3 C 0.090 3.910 4 H 0.095 0.905 5 C -0.256 4.256 6 S -0.043 6.043 7 C -0.226 4.226 8 C -0.133 4.133 9 C -0.012 4.012 10 C -0.559 4.559 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.085 4.085 19 C -0.107 4.107 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.141 4.141 23 C -0.127 4.127 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.135 -6.423 23.164 25.377 hybrid contribution 0.320 0.647 -1.223 1.420 sum 8.455 -5.776 21.941 24.213 Atomic orbital electron populations 1.23162 0.80210 1.03033 1.01302 1.87879 1.20481 1.26100 1.94861 1.20551 0.92089 0.86027 0.92290 0.90475 1.24020 0.98682 1.04680 0.98228 1.86666 1.13229 1.89086 1.15348 1.23706 1.03567 1.02976 0.92342 1.21454 0.93348 1.01196 0.97269 1.19103 0.97070 0.96440 0.88566 1.21222 0.92906 1.45213 0.96536 0.92553 1.25026 0.96062 0.95480 0.97892 1.69964 1.22938 1.46635 1.14002 0.86570 0.83429 0.78535 0.79349 1.20624 1.21194 1.19815 1.19650 0.95187 0.95686 0.97977 1.21054 0.93168 0.97696 0.98815 1.21200 0.96671 0.98886 0.97435 1.21197 0.99590 0.94310 0.98559 1.21095 0.94293 0.98597 1.00076 1.21007 0.97123 0.98169 0.96353 0.90951 0.94386 0.89601 0.89347 0.89344 0.90677 0.90564 0.92427 0.92478 0.96484 0.96437 0.92957 0.85383 0.85934 0.86103 0.85896 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.57 101.05 1.07 1.29 16 2 O -0.37 -4.68 9.63 -35.23 -0.34 -5.02 16 3 C 0.15 1.71 2.54 -27.88 -0.07 1.64 16 4 H 0.08 0.84 7.65 -51.93 -0.40 0.44 16 5 C -0.11 -1.35 5.61 37.16 0.21 -1.14 16 6 S -0.27 -4.12 18.47 -107.50 -1.99 -6.10 16 7 C -0.08 -1.37 5.94 37.16 0.22 -1.15 16 8 C -0.09 -1.96 5.16 -26.73 -0.14 -2.10 16 9 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 10 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 14 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.08 -0.89 4.97 -104.62 -0.52 -1.41 16 19 C -0.09 -0.93 9.36 -39.58 -0.37 -1.30 16 20 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 21 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 22 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 23 C -0.11 -1.01 9.67 -39.59 -0.38 -1.39 16 24 H 0.07 0.91 4.87 -37.58 -0.18 0.72 16 25 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 29 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 30 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.13 1.33 7.77 -52.49 -0.41 0.92 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.12 0.96 8.04 -52.49 -0.42 0.54 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -30.73 345.66 -9.57 -40.30 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.44 Total: -1.94 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -1.73 Total: -22.91 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.34 Total: -5.02 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -1.99 Total: -6.10 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.73 -9.57 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283386806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.992 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds