Wall clock time and date at job start Fri Apr 10 2020 17:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35768 * 116.99891 * 2 1 4 4 N 1.32156 * 120.19228 * 0.26159 * 3 2 1 5 5 N 1.28307 * 122.18841 * 180.27505 * 4 3 2 6 6 C 1.31899 * 122.43632 * 359.72111 * 5 4 3 7 7 C 1.38535 * 120.04273 * 359.97438 * 6 5 4 8 8 C 1.39332 * 117.93005 * 359.97438 * 7 6 5 9 9 N 1.39769 * 121.10777 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99947 * 33.42702 * 9 8 7 11 11 O 1.21587 * 120.00120 * 356.10059 * 10 9 8 12 12 N 1.34781 * 120.00166 * 176.09150 * 10 9 8 13 13 C 1.46496 * 119.99825 * 0.02562 * 12 10 9 14 14 C 1.46502 * 120.00108 * 180.02562 * 12 10 9 15 15 H 1.09003 * 109.46800 * 0.02562 * 14 12 10 16 16 C 1.52998 * 109.47201 * 120.00180 * 14 12 10 17 17 C 1.50702 * 109.47058 * 240.00598 * 14 12 10 18 18 H 1.07999 * 120.00326 * 359.97438 * 17 14 12 19 19 C 1.37878 * 119.99861 * 180.02562 * 17 14 12 20 20 N 1.31509 * 119.99728 * 179.97438 * 19 17 14 21 21 Si 1.86797 * 120.00132 * 359.97438 * 19 17 14 22 22 H 1.48499 * 109.47216 * 89.99977 * 21 19 17 23 23 H 1.48496 * 109.47136 * 210.00360 * 21 19 17 24 24 H 1.48500 * 109.46957 * 330.00167 * 21 19 17 25 25 H 1.09002 * 109.47691 * 300.00123 * 1 2 3 26 26 H 1.09003 * 109.46936 * 60.00362 * 1 2 3 27 27 H 1.09005 * 109.47259 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.98017 * 179.97438 * 6 5 4 29 29 H 1.07994 * 121.03492 * 180.02562 * 7 6 5 30 30 H 0.96996 * 120.00156 * 213.42727 * 9 8 7 31 31 H 1.09001 * 109.47457 * 269.99545 * 13 12 10 32 32 H 1.09001 * 109.47051 * 30.00275 * 13 12 10 33 33 H 1.09002 * 109.47152 * 149.99454 * 13 12 10 34 34 H 1.08998 * 109.47286 * 180.02562 * 16 14 12 35 35 H 1.08993 * 109.47301 * 300.00256 * 16 14 12 36 36 H 1.09001 * 109.46572 * 59.99991 * 16 14 12 37 37 H 0.97001 * 119.99865 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 7 1.3293 2.3205 0.0052 5 7 1.8716 3.4833 0.0002 6 6 3.1794 3.6540 -0.0051 7 6 4.0224 2.5546 -0.0048 8 6 3.4425 1.2876 0.0017 9 7 4.2302 0.1330 0.0018 10 6 5.4174 0.1273 0.6396 11 8 5.8360 1.1462 1.1542 12 7 6.1407 -1.0081 0.7072 13 6 5.6365 -2.2357 0.0868 14 6 7.4310 -1.0144 1.4009 15 1 7.6366 -0.0191 1.7949 16 6 7.3853 -2.0193 2.5538 17 6 8.5188 -1.4073 0.4348 18 1 8.2736 -1.6304 -0.5930 19 6 9.8271 -1.4830 0.8634 20 7 10.7763 -1.8264 0.0205 21 14 10.2513 -1.0979 2.6413 22 1 10.1756 -2.3417 3.4490 23 1 11.6272 -0.5439 2.7131 24 1 9.2882 -0.1016 3.1754 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.5935 4.6514 -0.0096 29 1 5.0955 2.6757 -0.0086 30 1 3.9223 -0.6642 -0.4571 31 1 5.0384 -2.7894 0.8105 32 1 5.0198 -1.9805 -0.7750 33 1 6.4763 -2.8506 -0.2369 34 1 8.3451 -2.0237 3.0702 35 1 6.5985 -1.7351 3.2525 36 1 7.1795 -3.0147 2.1601 37 1 11.6967 -1.8800 0.3221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288714893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:22 Heat of formation + Delta-G solvation = 18.300552 kcal Electronic energy + Delta-G solvation = -22134.901039 eV Core-core repulsion = 18721.798536 eV Total energy + Delta-G solvation = -3413.102503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.47145 -39.85812 -38.49827 -36.26954 -35.02799 -33.00247 -32.10335 -31.15560 -29.84850 -27.73798 -26.48299 -25.24681 -24.46002 -23.86534 -21.65463 -19.68656 -18.65787 -18.54421 -17.42088 -17.16849 -16.62510 -16.28990 -15.62870 -15.15631 -14.83964 -14.54765 -14.26248 -14.16111 -13.74011 -13.48226 -13.03667 -12.75875 -12.31934 -12.21675 -12.00819 -11.78648 -11.72401 -11.47714 -11.24798 -10.91725 -10.81094 -10.30828 -10.07710 -9.74116 -9.66036 -9.47610 -9.29694 -8.71532 -8.50920 -7.87715 -6.22595 -4.24335 0.77349 0.97396 2.71036 2.72236 3.18312 3.32424 3.33062 3.34180 3.66454 4.06392 4.11997 4.28128 4.38078 4.84975 4.92348 5.09622 5.10692 5.13814 5.38775 5.40993 5.47655 5.65865 5.78907 6.06887 6.15580 6.16288 6.23697 6.36552 6.42439 6.64751 6.73308 6.90232 7.18599 7.32326 7.51100 8.15393 8.35585 8.64868 8.75465 8.82538 9.37549 10.89832 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028383 B = 0.004462 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.255819 B = 6273.034534 C = 6752.974811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.304 6.304 3 C 0.235 3.765 4 N -0.288 5.288 5 N -0.236 5.236 6 C 0.035 3.965 7 C -0.105 4.105 8 C 0.170 3.830 9 N -0.676 5.676 10 C 0.700 3.300 11 O -0.579 6.579 12 N -0.592 5.592 13 C 0.080 3.920 14 C 0.244 3.756 15 H 0.066 0.934 16 C -0.162 4.162 17 C -0.532 4.532 18 H 0.080 0.920 19 C 0.078 3.922 20 N -0.893 5.893 21 Si 0.883 3.117 22 H -0.276 1.276 23 H -0.293 1.293 24 H -0.263 1.263 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.178 0.822 29 H 0.176 0.824 30 H 0.413 0.587 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.033 0.967 36 H 0.056 0.944 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 2.107 -0.561 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.209 6.209 3 C 0.046 3.954 4 N -0.144 5.144 5 N -0.080 5.080 6 C -0.131 4.131 7 C -0.136 4.136 8 C 0.060 3.940 9 N -0.326 5.326 10 C 0.402 3.598 11 O -0.456 6.456 12 N -0.325 5.325 13 C -0.064 4.064 14 C 0.142 3.858 15 H 0.083 0.917 16 C -0.220 4.220 17 C -0.570 4.570 18 H 0.098 0.902 19 C -0.126 4.126 20 N -0.530 5.530 21 Si 0.713 3.287 22 H -0.203 1.203 23 H -0.220 1.220 24 H -0.188 1.188 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.195 0.805 29 H 0.193 0.807 30 H 0.252 0.748 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.642 3.042 -0.173 17.903 hybrid contribution 1.450 -1.016 0.630 1.879 sum -16.192 2.026 0.457 16.325 Atomic orbital electron populations 1.22957 0.76629 1.03336 1.02763 1.86202 1.23292 1.23235 1.88164 1.21375 0.88917 0.87856 0.97264 1.72880 1.31435 0.93877 1.16179 1.72587 1.11892 1.13069 1.10444 1.24120 0.90394 1.00731 0.97870 1.22637 1.04310 0.89636 0.97018 1.17779 0.86978 0.88716 1.00517 1.42711 1.19871 1.13772 1.56227 1.15892 0.79602 0.84954 0.79322 1.90859 1.70521 1.31821 1.52430 1.47205 1.21461 1.07344 1.56473 1.21671 1.00510 0.88030 0.96202 1.19294 0.78848 0.97352 0.90272 0.91671 1.22467 0.99751 1.01066 0.98693 1.21132 0.90341 1.48052 0.97487 0.90241 1.24841 0.96038 0.94121 0.97565 1.69864 1.00926 1.47170 1.35005 0.86920 0.77514 0.78973 0.85323 1.20338 1.22046 1.18754 0.92002 0.92003 0.88242 0.80543 0.80711 0.74796 0.93286 0.93090 0.88808 0.92960 0.94772 0.92476 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.40 101.05 1.05 1.39 16 2 O -0.30 -3.72 10.14 -19.02 -0.19 -3.91 16 3 C 0.24 3.33 7.60 -16.78 -0.13 3.21 16 4 N -0.29 -4.21 10.40 30.62 0.32 -3.89 16 5 N -0.24 -3.40 11.49 30.53 0.35 -3.05 16 6 C 0.04 0.45 11.30 -17.41 -0.20 0.25 16 7 C -0.10 -1.52 8.86 -39.07 -0.35 -1.87 16 8 C 0.17 2.57 6.40 -83.20 -0.53 2.03 16 9 N -0.68 -10.34 5.11 -13.89 -0.07 -10.41 16 10 C 0.70 13.45 8.15 -86.92 -0.71 12.75 16 11 O -0.58 -12.79 13.13 5.29 0.07 -12.72 16 12 N -0.59 -11.52 2.75 -181.00 -0.50 -12.02 16 13 C 0.08 1.20 9.23 59.84 0.55 1.75 16 14 C 0.24 5.62 2.23 -69.08 -0.15 5.47 16 15 H 0.07 1.67 5.96 -51.93 -0.31 1.36 16 16 C -0.16 -3.34 8.67 37.16 0.32 -3.02 16 17 C -0.53 -14.05 8.57 -34.44 -0.30 -14.34 16 18 H 0.08 2.25 7.58 -52.49 -0.40 1.85 16 19 C 0.08 2.13 5.45 -17.82 -0.10 2.04 16 20 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 21 Si 0.88 21.11 24.37 -169.99 -4.14 16.97 16 22 H -0.28 -6.33 6.87 56.52 0.39 -5.95 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.26 -6.20 6.53 56.52 0.37 -5.83 16 25 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 26 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.18 1.59 8.06 -52.48 -0.42 1.17 16 29 H 0.18 2.73 6.29 -52.49 -0.33 2.40 16 30 H 0.41 5.28 6.31 -40.82 -0.26 5.02 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.62 6.31 -51.93 -0.33 0.29 16 33 H 0.09 1.56 7.02 -51.93 -0.36 1.19 16 34 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 1.09 7.67 -51.93 -0.40 0.69 16 37 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 306.13 15.07 4.61 4.61 Total: -1.00 -32.14 306.13 -3.58 -35.72 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.27 Total: 4.31 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -0.53 Total: 9.65 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.87 Total: -54.64 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.12 Total: -16.63 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.14 Total: 16.97 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.14 -3.58 -35.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288714893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.021 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds