Wall clock time and date at job start Fri Apr 10 2020 17:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35768 * 116.99891 * 2 1 4 4 N 1.32156 * 120.19228 * 0.26159 * 3 2 1 5 5 N 1.28307 * 122.18841 * 180.27505 * 4 3 2 6 6 C 1.31899 * 122.43632 * 359.72111 * 5 4 3 7 7 C 1.38535 * 120.04273 * 359.97438 * 6 5 4 8 8 C 1.39332 * 117.93005 * 359.97438 * 7 6 5 9 9 N 1.39769 * 121.10777 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99947 * 33.42702 * 9 8 7 11 11 O 1.21587 * 120.00120 * 356.10059 * 10 9 8 12 12 N 1.34781 * 120.00166 * 176.09150 * 10 9 8 13 13 C 1.46496 * 119.99825 * 0.02562 * 12 10 9 14 14 C 1.46502 * 120.00108 * 180.02562 * 12 10 9 15 15 H 1.09003 * 109.46800 * 0.02562 * 14 12 10 16 16 C 1.52998 * 109.47201 * 120.00180 * 14 12 10 17 17 C 1.50702 * 109.47058 * 240.00598 * 14 12 10 18 18 H 1.07999 * 120.00326 * 359.97438 * 17 14 12 19 19 C 1.37878 * 119.99861 * 180.02562 * 17 14 12 20 20 N 1.31509 * 119.99728 * 179.97438 * 19 17 14 21 21 Si 1.86797 * 120.00132 * 359.97438 * 19 17 14 22 22 H 1.48499 * 109.47216 * 89.99977 * 21 19 17 23 23 H 1.48496 * 109.47136 * 210.00360 * 21 19 17 24 24 H 1.48500 * 109.46957 * 330.00167 * 21 19 17 25 25 H 1.09002 * 109.47691 * 300.00123 * 1 2 3 26 26 H 1.09003 * 109.46936 * 60.00362 * 1 2 3 27 27 H 1.09005 * 109.47259 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.98017 * 179.97438 * 6 5 4 29 29 H 1.07994 * 121.03492 * 180.02562 * 7 6 5 30 30 H 0.96996 * 120.00156 * 213.42727 * 9 8 7 31 31 H 1.09001 * 109.47457 * 269.99545 * 13 12 10 32 32 H 1.09001 * 109.47051 * 30.00275 * 13 12 10 33 33 H 1.09002 * 109.47152 * 149.99454 * 13 12 10 34 34 H 1.08998 * 109.47286 * 180.02562 * 16 14 12 35 35 H 1.08993 * 109.47301 * 300.00256 * 16 14 12 36 36 H 1.09001 * 109.46572 * 59.99991 * 16 14 12 37 37 H 0.97001 * 119.99865 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 7 1.3293 2.3205 0.0052 5 7 1.8716 3.4833 0.0002 6 6 3.1794 3.6540 -0.0051 7 6 4.0224 2.5546 -0.0048 8 6 3.4425 1.2876 0.0017 9 7 4.2302 0.1330 0.0018 10 6 5.4174 0.1273 0.6396 11 8 5.8360 1.1462 1.1542 12 7 6.1407 -1.0081 0.7072 13 6 5.6365 -2.2357 0.0868 14 6 7.4310 -1.0144 1.4009 15 1 7.6366 -0.0191 1.7949 16 6 7.3853 -2.0193 2.5538 17 6 8.5188 -1.4073 0.4348 18 1 8.2736 -1.6304 -0.5930 19 6 9.8271 -1.4830 0.8634 20 7 10.7763 -1.8264 0.0205 21 14 10.2513 -1.0979 2.6413 22 1 10.1756 -2.3417 3.4490 23 1 11.6272 -0.5439 2.7131 24 1 9.2882 -0.1016 3.1754 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.5935 4.6514 -0.0096 29 1 5.0955 2.6757 -0.0086 30 1 3.9223 -0.6642 -0.4571 31 1 5.0384 -2.7894 0.8105 32 1 5.0198 -1.9805 -0.7750 33 1 6.4763 -2.8506 -0.2369 34 1 8.3451 -2.0237 3.0702 35 1 6.5985 -1.7351 3.2525 36 1 7.1795 -3.0147 2.1601 37 1 11.6967 -1.8800 0.3221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288714893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:21 Heat of formation + Delta-G solvation = -7.173673 kcal Electronic energy + Delta-G solvation = -22136.005685 eV Core-core repulsion = 18721.798536 eV Total energy + Delta-G solvation = -3414.207148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.61148 -41.24756 -39.44741 -37.79659 -36.45190 -34.84022 -33.31955 -32.61022 -31.26743 -28.54230 -27.82443 -27.17150 -25.70263 -24.90599 -23.22835 -21.12851 -19.94498 -19.61405 -18.96657 -18.48230 -18.17850 -17.35004 -17.23860 -16.62725 -16.22405 -15.57131 -15.48659 -15.30004 -15.11604 -14.87985 -14.66942 -14.25259 -14.01538 -13.68507 -13.14560 -13.06973 -12.92061 -12.75577 -12.67063 -12.45800 -12.08447 -12.07035 -11.62323 -11.47413 -11.33499 -10.84469 -10.78474 -10.55712 -9.78519 -9.33670 -8.34107 -6.39017 -0.38105 -0.07941 1.28827 1.36439 1.39300 1.46569 1.77360 1.93362 2.28888 2.51593 2.75261 3.01844 3.04662 3.35352 3.77254 3.93624 4.24104 4.32133 4.42734 4.43369 4.47332 4.53502 4.56680 4.65320 4.72596 4.76552 4.89835 5.04351 5.07870 5.17691 5.25919 5.47350 5.60701 5.79566 5.92930 6.26732 6.62929 6.79700 7.22593 7.36639 7.56848 8.81610 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028383 B = 0.004462 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.255819 B = 6273.034534 C = 6752.974811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.308 6.308 3 C 0.241 3.759 4 N -0.298 5.298 5 N -0.249 5.249 6 C 0.046 3.954 7 C -0.110 4.110 8 C 0.150 3.850 9 N -0.659 5.659 10 C 0.699 3.301 11 O -0.613 6.613 12 N -0.600 5.600 13 C 0.076 3.924 14 C 0.248 3.752 15 H 0.038 0.962 16 C -0.155 4.155 17 C -0.527 4.527 18 H 0.048 0.952 19 C 0.026 3.974 20 N -0.938 5.938 21 Si 0.939 3.061 22 H -0.255 1.255 23 H -0.297 1.297 24 H -0.260 1.260 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.132 0.868 28 H 0.213 0.787 29 H 0.162 0.838 30 H 0.425 0.575 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.772 1.773 0.368 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.212 6.212 3 C 0.051 3.949 4 N -0.153 5.153 5 N -0.092 5.092 6 C -0.120 4.120 7 C -0.141 4.141 8 C 0.041 3.959 9 N -0.311 5.311 10 C 0.400 3.600 11 O -0.493 6.493 12 N -0.333 5.333 13 C -0.066 4.066 14 C 0.145 3.855 15 H 0.056 0.944 16 C -0.212 4.212 17 C -0.565 4.565 18 H 0.066 0.934 19 C -0.173 4.173 20 N -0.577 5.577 21 Si 0.766 3.234 22 H -0.181 1.181 23 H -0.225 1.225 24 H -0.184 1.184 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.150 0.850 28 H 0.229 0.771 29 H 0.180 0.820 30 H 0.267 0.733 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.662 2.674 0.734 19.857 hybrid contribution 1.935 -0.883 0.228 2.139 sum -17.728 1.791 0.961 17.844 Atomic orbital electron populations 1.23257 0.74713 1.05506 1.02780 1.86209 1.25135 1.22126 1.87748 1.21356 0.88528 0.88437 0.96533 1.72854 1.31716 0.94075 1.16681 1.72564 1.12615 1.13217 1.10780 1.24561 0.89512 1.01744 0.96215 1.22658 1.03956 0.90353 0.97182 1.17963 0.87551 0.88680 1.01706 1.42377 1.18592 1.14518 1.55569 1.15975 0.80396 0.84280 0.79318 1.90833 1.71612 1.32977 1.53922 1.47126 1.20554 1.08867 1.56765 1.21885 1.00440 0.86361 0.97942 1.18945 0.79628 0.96462 0.90477 0.94401 1.22328 1.00049 1.00985 0.97887 1.21339 0.91564 1.46728 0.96878 0.93362 1.25592 0.96045 0.94200 1.01474 1.69991 1.01398 1.49253 1.37095 0.86011 0.76815 0.79608 0.80944 1.18060 1.22489 1.18420 0.92246 0.91718 0.85033 0.77085 0.82013 0.73341 0.90374 0.90154 0.90681 0.93805 0.92660 0.90994 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.40 113.37 1.18 1.65 16 2 O -0.31 -6.82 10.14 -90.96 -0.92 -7.75 16 3 C 0.24 6.45 7.60 85.06 0.65 7.09 16 4 N -0.30 -8.24 10.40 -169.89 -1.77 -10.01 16 5 N -0.25 -6.76 11.49 -57.32 -0.66 -7.42 16 6 C 0.05 1.10 11.30 84.75 0.96 2.05 16 7 C -0.11 -3.12 8.86 22.60 0.20 -2.92 16 8 C 0.15 4.36 6.40 38.55 0.25 4.61 16 9 N -0.66 -19.29 5.11 -316.13 -1.62 -20.91 16 10 C 0.70 26.35 8.15 179.05 1.46 27.81 16 11 O -0.61 -27.18 13.13 -3.99 -0.05 -27.24 16 12 N -0.60 -22.82 2.75 -844.84 -2.33 -25.14 16 13 C 0.08 2.15 9.23 127.77 1.18 3.33 16 14 C 0.25 11.32 2.23 44.24 0.10 11.42 16 15 H 0.04 1.95 5.96 -2.39 -0.01 1.93 16 16 C -0.15 -6.06 8.67 71.98 0.62 -5.44 16 17 C -0.53 -28.23 8.57 25.60 0.22 -28.01 16 18 H 0.05 2.82 7.58 -2.91 -0.02 2.80 16 19 C 0.03 1.44 5.45 84.66 0.46 1.90 16 20 N -0.94 -55.91 13.96 21.45 0.30 -55.61 16 21 Si 0.94 43.44 24.37 68.60 1.67 45.11 16 22 H -0.26 -10.86 6.87 99.48 0.68 -10.17 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.26 -11.79 6.53 99.48 0.65 -11.14 16 25 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 26 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 27 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.21 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.16 5.08 6.29 -2.91 -0.02 5.06 16 30 H 0.43 9.97 6.31 -92.71 -0.59 9.38 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 1.76 6.31 -2.39 -0.02 1.75 16 33 H 0.07 2.43 7.02 -2.39 -0.02 2.42 16 34 H 0.04 1.79 3.27 -2.39 -0.01 1.78 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.07 2.57 7.67 -2.39 -0.02 2.56 16 37 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -70.44 306.13 2.35 -68.08 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.45 Total: 17.39 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 7.27 Total: 23.50 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -6.07 Total: -119.10 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.97 Total: -34.98 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.67 Total: 45.11 kcal Total: -70.44 2.35 -68.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288714893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.910 kcal (2) G-P(sol) polarization free energy of solvation -70.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds