Wall clock time and date at job start Fri Apr 10 2020 17:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 116.99790 * 2 1 4 4 C 1.38755 * 120.05710 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94263 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.06020 * 0.02562 * 5 4 3 7 7 C 1.38248 * 120.10844 * 359.70077 * 6 5 4 8 8 C 1.38167 * 120.05373 * 0.55441 * 7 6 5 9 9 C 1.50708 * 120.02773 * 179.74457 * 8 7 6 10 10 H 1.08997 * 109.47028 * 214.72665 * 9 8 7 11 11 C 1.52999 * 109.46783 * 94.72054 * 9 8 7 12 12 S 1.81402 * 109.46995 * 334.72531 * 9 8 7 13 13 C 1.81404 * 102.99736 * 292.14216 * 12 9 8 14 14 H 1.08994 * 109.47441 * 52.88407 * 13 12 9 15 15 C 1.52997 * 109.47149 * 292.87710 * 13 12 9 16 16 C 1.53001 * 109.46956 * 172.88349 * 13 12 9 17 17 C 1.50703 * 109.46957 * 294.99954 * 16 13 12 18 18 H 1.07998 * 119.99771 * 359.97438 * 17 16 13 19 19 C 1.37879 * 120.00032 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00123 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99829 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46855 * 90.00360 * 21 19 17 23 23 H 1.48507 * 109.47100 * 209.99997 * 21 19 17 24 24 H 1.48492 * 109.47246 * 330.00038 * 21 19 17 25 25 H 1.08999 * 109.46904 * 60.00089 * 1 2 3 26 26 H 1.08999 * 109.46865 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46735 * 299.99894 * 1 2 3 28 28 H 1.08000 * 120.02363 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.97359 * 179.97438 * 5 4 3 30 30 H 1.07997 * 119.94422 * 180.02562 * 6 5 4 31 31 H 1.08000 * 119.97391 * 180.27289 * 7 6 5 32 32 H 1.09005 * 109.46957 * 58.36092 * 11 9 8 33 33 H 1.09005 * 109.46775 * 178.35826 * 11 9 8 34 34 H 1.08995 * 109.47598 * 298.35882 * 11 9 8 35 35 H 1.09001 * 109.47234 * 65.58008 * 15 13 12 36 36 H 1.09004 * 109.47531 * 185.57980 * 15 13 12 37 37 H 1.08997 * 109.47355 * 305.58395 * 15 13 12 38 38 H 1.09000 * 109.47648 * 54.99541 * 16 13 12 39 39 H 1.09002 * 109.47361 * 175.00043 * 16 13 12 40 40 H 0.96995 * 119.99984 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 4.0559 2.5172 0.0046 8 6 3.4311 1.2849 -0.0001 9 6 4.2537 0.0222 0.0009 10 1 3.7468 -0.7422 -0.5880 11 6 4.4268 -0.4725 1.4383 12 16 5.8825 0.3611 -0.7222 13 6 5.4949 0.6945 -2.4627 14 1 4.7261 1.4648 -2.5226 15 6 4.9861 -0.5867 -3.1264 16 6 6.7561 1.1757 -3.1829 17 6 7.1874 2.5010 -2.6095 18 1 6.6185 2.9548 -1.8115 19 6 8.3076 3.1345 -3.1043 20 7 8.6836 4.2913 -2.6043 21 14 9.2911 2.3497 -4.4851 22 1 8.7589 2.8072 -5.7938 23 1 10.7171 2.7465 -4.3646 24 1 9.1792 0.8718 -4.3944 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2127 2.3203 -0.0014 29 1 1.3340 4.5114 -0.0019 30 1 3.7921 4.6382 -0.0016 31 1 5.1344 2.5753 0.0087 32 1 3.4470 -0.6484 1.8825 33 1 4.9971 -1.4015 1.4366 34 1 4.9597 0.2798 2.0198 35 1 4.0351 -0.8749 -2.6785 36 1 4.8473 -0.4127 -4.1935 37 1 5.7134 -1.3852 -2.9800 38 1 7.5532 0.4446 -3.0475 39 1 6.5458 1.2910 -4.2462 40 1 9.4719 4.7368 -2.9522 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298351906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:33 Heat of formation + Delta-G solvation = -28.160472 kcal Electronic energy + Delta-G solvation = -20063.437985 eV Core-core repulsion = 17162.321244 eV Total energy + Delta-G solvation = -2901.116741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.124 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11781 -37.31171 -34.60645 -33.98069 -32.00420 -29.96452 -29.31462 -27.98495 -27.26046 -23.85534 -23.03157 -22.00484 -21.07200 -20.06475 -17.93045 -16.66895 -16.28730 -15.96386 -15.71789 -15.14728 -14.55956 -14.37994 -14.20671 -13.84028 -13.38720 -13.21844 -12.89646 -12.58480 -12.26564 -12.13946 -12.08652 -11.87628 -11.76691 -11.54926 -11.16205 -11.08595 -10.93218 -10.77452 -10.53402 -10.08541 -9.84544 -9.61284 -9.18121 -8.97347 -8.57875 -8.47727 -7.97046 -6.81560 -5.97707 -3.94238 1.53354 1.67445 2.37777 3.30776 3.33480 3.36251 3.41600 3.44986 4.00859 4.49768 4.77796 4.90972 5.03077 5.07034 5.28839 5.35547 5.36704 5.39598 5.44708 5.57615 5.63378 5.67365 5.73594 5.89301 5.97555 6.02044 6.08941 6.26597 6.34157 6.38242 6.48366 6.50376 6.62645 6.69954 6.90111 7.07392 7.10128 7.29619 7.49388 7.78846 8.59220 9.09892 9.64102 11.15200 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.005427 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.334407 B = 5158.301750 C = 5661.868801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.125 3.875 4 C -0.216 4.216 5 C -0.087 4.087 6 C -0.150 4.150 7 C -0.061 4.061 8 C -0.112 4.112 9 C -0.026 4.026 10 H 0.089 0.911 11 C -0.121 4.121 12 S -0.217 6.217 13 C -0.037 4.037 14 H 0.079 0.921 15 C -0.147 4.147 16 C 0.003 3.997 17 C -0.510 4.510 18 H 0.082 0.918 19 C 0.069 3.931 20 N -0.901 5.901 21 Si 0.871 3.129 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.158 0.842 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.958 -7.648 5.858 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.079 3.921 4 C -0.235 4.235 5 C -0.106 4.106 6 C -0.168 4.168 7 C -0.079 4.079 8 C -0.115 4.115 9 C -0.155 4.155 10 H 0.107 0.893 11 C -0.179 4.179 12 S 0.014 5.986 13 C -0.165 4.165 14 H 0.097 0.903 15 C -0.206 4.206 16 C -0.036 4.036 17 C -0.548 4.548 18 H 0.100 0.900 19 C -0.132 4.132 20 N -0.540 5.540 21 Si 0.699 3.301 22 H -0.205 1.205 23 H -0.214 1.214 24 H -0.191 1.191 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.144 0.856 31 H 0.176 0.824 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.702 -7.732 6.346 17.782 hybrid contribution -0.973 -0.019 -1.497 1.786 sum -15.675 -7.751 4.849 18.146 Atomic orbital electron populations 1.22988 0.79067 1.03477 1.01111 1.86060 1.20743 1.27162 1.88975 1.18804 0.91564 0.83986 0.97708 1.21072 0.99375 0.92458 1.10626 1.20925 0.94876 0.96628 0.98134 1.21179 0.93535 0.99007 1.03091 1.21644 1.02506 0.90258 0.93515 1.19306 0.89859 0.95598 1.06730 1.21934 0.96702 0.96514 1.00331 0.89289 1.21502 1.01788 1.01348 0.93240 1.87029 1.10046 1.91081 1.10447 1.23120 1.02929 0.98392 0.92106 0.90263 1.22142 1.00358 0.97724 1.00369 1.19497 0.91325 0.97773 0.94975 1.21111 1.11208 1.02405 1.20052 0.89976 1.24953 0.97099 0.94661 0.96465 1.69895 1.25771 1.15701 1.42656 0.86909 0.79668 0.80486 0.83043 1.20453 1.21391 1.19068 0.92917 0.88601 0.92929 0.86045 0.86264 0.85619 0.82448 0.91874 0.91806 0.91872 0.93658 0.92365 0.92006 0.95781 0.95779 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.19 9.63 -19.43 -0.19 -4.37 16 3 C 0.13 1.86 6.66 -39.22 -0.26 1.59 16 4 C -0.22 -2.87 9.04 -39.43 -0.36 -3.23 16 5 C -0.09 -1.19 10.04 -39.61 -0.40 -1.59 16 6 C -0.15 -2.36 10.04 -39.56 -0.40 -2.76 16 7 C -0.06 -1.07 8.73 -39.60 -0.35 -1.41 16 8 C -0.11 -1.84 4.67 -104.47 -0.49 -2.33 16 9 C -0.03 -0.42 2.58 -27.88 -0.07 -0.49 16 10 H 0.09 1.43 6.62 -51.93 -0.34 1.09 16 11 C -0.12 -1.69 9.18 37.16 0.34 -1.35 16 12 S -0.22 -4.23 17.77 -107.50 -1.91 -6.14 16 13 C -0.04 -0.75 2.62 -26.73 -0.07 -0.82 16 14 H 0.08 1.69 7.57 -51.93 -0.39 1.30 16 15 C -0.15 -2.48 9.05 37.16 0.34 -2.15 16 16 C 0.00 0.06 3.52 -27.88 -0.10 -0.04 16 17 C -0.51 -14.22 9.09 -34.44 -0.31 -14.53 16 18 H 0.08 2.44 7.77 -52.49 -0.41 2.04 16 19 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 20 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 21 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 25 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 28 H 0.12 1.27 6.30 -52.49 -0.33 0.94 16 29 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.16 3.12 6.41 -52.49 -0.34 2.79 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.70 7.08 -51.93 -0.37 0.33 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 39 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -30.89 335.19 -8.46 -39.35 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.29 Total: 1.78 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -1.23 Total: -25.94 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.77 Total: -26.80 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.19 Total: -4.37 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Atomic # 16 Polarization: -4.23 SS G_CDS: -1.91 Total: -6.14 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.89 -8.46 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298351906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.188 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds