Wall clock time and date at job start Fri Apr 10 2020 17:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 116.99790 * 2 1 4 4 C 1.38755 * 120.05710 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94263 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.06020 * 0.02562 * 5 4 3 7 7 C 1.38248 * 120.10844 * 359.70077 * 6 5 4 8 8 C 1.38167 * 120.05373 * 0.55441 * 7 6 5 9 9 C 1.50708 * 120.02773 * 179.74457 * 8 7 6 10 10 H 1.08997 * 109.47028 * 214.72665 * 9 8 7 11 11 C 1.52999 * 109.46783 * 94.72054 * 9 8 7 12 12 S 1.81402 * 109.46995 * 334.72531 * 9 8 7 13 13 C 1.81404 * 102.99736 * 292.14216 * 12 9 8 14 14 H 1.08994 * 109.47441 * 52.88407 * 13 12 9 15 15 C 1.52997 * 109.47149 * 292.87710 * 13 12 9 16 16 C 1.53001 * 109.46956 * 172.88349 * 13 12 9 17 17 C 1.50703 * 109.46957 * 294.99954 * 16 13 12 18 18 H 1.07998 * 119.99771 * 359.97438 * 17 16 13 19 19 C 1.37879 * 120.00032 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00123 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99829 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46855 * 90.00360 * 21 19 17 23 23 H 1.48507 * 109.47100 * 209.99997 * 21 19 17 24 24 H 1.48492 * 109.47246 * 330.00038 * 21 19 17 25 25 H 1.08999 * 109.46904 * 60.00089 * 1 2 3 26 26 H 1.08999 * 109.46865 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46735 * 299.99894 * 1 2 3 28 28 H 1.08000 * 120.02363 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.97359 * 179.97438 * 5 4 3 30 30 H 1.07997 * 119.94422 * 180.02562 * 6 5 4 31 31 H 1.08000 * 119.97391 * 180.27289 * 7 6 5 32 32 H 1.09005 * 109.46957 * 58.36092 * 11 9 8 33 33 H 1.09005 * 109.46775 * 178.35826 * 11 9 8 34 34 H 1.08995 * 109.47598 * 298.35882 * 11 9 8 35 35 H 1.09001 * 109.47234 * 65.58008 * 15 13 12 36 36 H 1.09004 * 109.47531 * 185.57980 * 15 13 12 37 37 H 1.08997 * 109.47355 * 305.58395 * 15 13 12 38 38 H 1.09000 * 109.47648 * 54.99541 * 16 13 12 39 39 H 1.09002 * 109.47361 * 175.00043 * 16 13 12 40 40 H 0.96995 * 119.99984 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 4.0559 2.5172 0.0046 8 6 3.4311 1.2849 -0.0001 9 6 4.2537 0.0222 0.0009 10 1 3.7468 -0.7422 -0.5880 11 6 4.4268 -0.4725 1.4383 12 16 5.8825 0.3611 -0.7222 13 6 5.4949 0.6945 -2.4627 14 1 4.7261 1.4648 -2.5226 15 6 4.9861 -0.5867 -3.1264 16 6 6.7561 1.1757 -3.1829 17 6 7.1874 2.5010 -2.6095 18 1 6.6185 2.9548 -1.8115 19 6 8.3076 3.1345 -3.1043 20 7 8.6836 4.2913 -2.6043 21 14 9.2911 2.3497 -4.4851 22 1 8.7589 2.8072 -5.7938 23 1 10.7171 2.7465 -4.3646 24 1 9.1792 0.8718 -4.3944 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2127 2.3203 -0.0014 29 1 1.3340 4.5114 -0.0019 30 1 3.7921 4.6382 -0.0016 31 1 5.1344 2.5753 0.0087 32 1 3.4470 -0.6484 1.8825 33 1 4.9971 -1.4015 1.4366 34 1 4.9597 0.2798 2.0198 35 1 4.0351 -0.8749 -2.6785 36 1 4.8473 -0.4127 -4.1935 37 1 5.7134 -1.3852 -2.9800 38 1 7.5532 0.4446 -3.0475 39 1 6.5458 1.2910 -4.2462 40 1 9.4719 4.7368 -2.9522 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298351906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:32 Heat of formation + Delta-G solvation = -44.632249 kcal Electronic energy + Delta-G solvation = -20064.152255 eV Core-core repulsion = 17162.321244 eV Total energy + Delta-G solvation = -2901.831011 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19071 -38.36586 -36.40889 -35.20234 -34.07036 -31.11143 -30.40297 -29.85848 -28.06892 -25.05263 -24.91575 -23.15762 -22.39919 -21.67479 -19.03171 -18.78011 -17.43574 -17.24262 -16.67829 -16.54872 -16.39402 -15.74682 -15.36786 -15.16826 -14.73848 -14.55942 -14.37607 -14.07508 -13.87462 -13.63702 -13.43421 -13.15824 -12.87411 -12.66636 -12.61083 -12.58695 -12.32165 -11.99510 -11.81045 -11.74013 -11.60797 -11.40368 -11.29706 -10.72412 -10.47099 -9.77745 -9.09454 -8.37084 -8.19677 -6.22072 0.35498 0.50148 0.92802 1.35330 1.38294 1.48632 1.87312 2.39142 2.39883 2.82536 3.14084 3.62394 3.97370 4.04344 4.14242 4.17868 4.21464 4.23722 4.36001 4.44001 4.47604 4.53600 4.56390 4.75764 4.78814 4.84980 4.86489 4.90545 4.95905 5.06700 5.10438 5.19981 5.21488 5.34119 5.40300 5.51600 5.66438 5.70224 5.88958 6.37103 6.47644 6.84285 7.39098 8.95196 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.005427 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.334407 B = 5158.301750 C = 5661.868801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.328 6.328 3 C 0.128 3.872 4 C -0.210 4.210 5 C -0.080 4.080 6 C -0.170 4.170 7 C -0.084 4.084 8 C -0.129 4.129 9 C -0.004 4.004 10 H 0.095 0.905 11 C -0.116 4.116 12 S -0.267 6.267 13 C -0.028 4.028 14 H 0.061 0.939 15 C -0.137 4.137 16 C 0.006 3.994 17 C -0.509 4.509 18 H 0.045 0.955 19 C 0.007 3.993 20 N -0.949 5.949 21 Si 0.939 3.061 22 H -0.266 1.266 23 H -0.287 1.287 24 H -0.251 1.251 25 H 0.062 0.938 26 H 0.119 0.881 27 H 0.067 0.933 28 H 0.158 0.842 29 H 0.151 0.849 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.021 0.979 39 H 0.033 0.967 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.543 -9.603 5.120 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.242 6.242 3 C 0.081 3.919 4 C -0.228 4.228 5 C -0.098 4.098 6 C -0.189 4.189 7 C -0.103 4.103 8 C -0.132 4.132 9 C -0.133 4.133 10 H 0.113 0.887 11 C -0.174 4.174 12 S -0.037 6.037 13 C -0.157 4.157 14 H 0.079 0.921 15 C -0.196 4.196 16 C -0.033 4.033 17 C -0.547 4.547 18 H 0.064 0.936 19 C -0.189 4.189 20 N -0.591 5.591 21 Si 0.763 3.237 22 H -0.191 1.191 23 H -0.213 1.213 24 H -0.174 1.174 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.085 0.915 28 H 0.175 0.825 29 H 0.169 0.831 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.308 -9.706 5.604 20.620 hybrid contribution -0.330 0.616 -1.149 1.345 sum -17.639 -9.090 4.455 20.337 Atomic orbital electron populations 1.23351 0.76513 1.05539 1.02247 1.86043 1.23318 1.26223 1.88590 1.18820 0.90958 0.85298 0.96830 1.21467 1.01106 0.91491 1.08752 1.21248 0.93783 0.98368 0.96434 1.21266 0.95014 0.98246 1.04356 1.21380 1.00963 0.91951 0.96013 1.19275 0.91097 0.94845 1.07978 1.21904 0.93715 0.96656 1.01020 0.88673 1.21497 1.02809 1.01316 0.91764 1.87085 1.14203 1.91258 1.11156 1.22928 1.00613 0.99779 0.92381 0.92058 1.22054 1.01079 0.95648 1.00818 1.19414 0.92898 0.95377 0.95568 1.21344 1.10620 1.03908 1.18832 0.93643 1.25851 0.98487 0.95181 0.99380 1.70056 1.26681 1.17575 1.44744 0.85831 0.77782 0.80236 0.79869 1.19148 1.21322 1.17441 0.91978 0.86289 0.91457 0.82472 0.83114 0.86139 0.86149 0.90002 0.90783 0.92969 0.92054 0.91025 0.91377 0.96102 0.94888 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.67 9.63 -92.44 -0.89 -8.56 16 3 C 0.13 3.52 6.66 22.51 0.15 3.67 16 4 C -0.21 -4.94 9.04 22.37 0.20 -4.74 16 5 C -0.08 -2.05 10.04 22.25 0.22 -1.83 16 6 C -0.17 -5.58 10.04 22.28 0.22 -5.35 16 7 C -0.08 -3.13 8.73 22.26 0.19 -2.94 16 8 C -0.13 -4.26 4.67 -19.77 -0.09 -4.35 16 9 C 0.00 -0.14 2.58 29.85 0.08 -0.06 16 10 H 0.10 2.92 6.62 -2.39 -0.02 2.90 16 11 C -0.12 -3.15 9.18 71.98 0.66 -2.49 16 12 S -0.27 -10.78 17.77 -56.49 -1.00 -11.78 16 13 C -0.03 -1.16 2.62 30.59 0.08 -1.08 16 14 H 0.06 2.70 7.57 -2.39 -0.02 2.68 16 15 C -0.14 -4.38 9.05 71.98 0.65 -3.73 16 16 C 0.01 0.27 3.52 29.85 0.10 0.37 16 17 C -0.51 -29.52 9.09 25.60 0.23 -29.29 16 18 H 0.05 2.91 7.77 -2.91 -0.02 2.88 16 19 C 0.01 0.43 5.47 84.66 0.46 0.90 16 20 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 21 Si 0.94 45.19 27.47 68.60 1.88 47.08 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 25 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 26 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 28 H 0.16 2.54 6.30 -2.91 -0.02 2.52 16 29 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 30 H 0.12 3.89 8.06 -2.91 -0.02 3.86 16 31 H 0.12 5.32 6.41 -2.91 -0.02 5.30 16 32 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.76 7.08 -2.39 -0.02 1.74 16 36 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.02 1.01 7.20 -2.39 -0.02 1.00 16 39 H 0.03 1.52 7.57 -2.39 -0.02 1.51 16 40 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -69.67 335.19 5.52 -64.14 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.95 Total: 18.81 kcal Atomic # 6 Polarization: -53.85 SS G_CDS: 4.28 Total: -49.56 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.30 Total: -60.13 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.89 Total: -8.56 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.08 kcal Atomic # 16 Polarization: -10.78 SS G_CDS: -1.00 Total: -11.78 kcal Total: -69.67 5.52 -64.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298351906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.511 kcal (2) G-P(sol) polarization free energy of solvation -69.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds