Wall clock time and date at job start Fri Apr 10 2020 17:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35912 * 116.99593 * 2 1 4 4 C 1.38750 * 120.05841 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.94648 * 179.97438 * 4 3 2 6 6 C 1.38293 * 120.05649 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.10577 * 359.74394 * 6 5 4 8 8 C 1.38167 * 120.06170 * 0.50907 * 7 6 5 9 9 C 1.50698 * 120.03096 * 179.77256 * 8 7 6 10 10 H 1.09003 * 109.47065 * 214.72512 * 9 8 7 11 11 C 1.52997 * 109.47058 * 94.72143 * 9 8 7 12 12 S 1.81401 * 109.46884 * 334.72108 * 9 8 7 13 13 C 1.81399 * 102.99805 * 185.00249 * 12 9 8 14 14 H 1.09004 * 109.47089 * 304.99921 * 13 12 9 15 15 C 1.53005 * 109.47445 * 64.99744 * 13 12 9 16 16 C 1.53002 * 109.47162 * 185.00152 * 13 12 9 17 17 C 1.50696 * 109.47061 * 65.00106 * 16 13 12 18 18 H 1.07994 * 120.00287 * 359.97438 * 17 16 13 19 19 C 1.37876 * 119.99763 * 180.02562 * 17 16 13 20 20 N 1.31522 * 120.00246 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99903 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47074 * 90.00136 * 21 19 17 23 23 H 1.48505 * 109.47005 * 209.99774 * 21 19 17 24 24 H 1.48496 * 109.47246 * 329.99720 * 21 19 17 25 25 H 1.08998 * 109.47132 * 60.00243 * 1 2 3 26 26 H 1.09001 * 109.46910 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47446 * 300.00025 * 1 2 3 28 28 H 1.08009 * 120.02523 * 359.95354 * 4 3 2 29 29 H 1.08000 * 119.97438 * 179.97438 * 5 4 3 30 30 H 1.07995 * 119.94827 * 179.97438 * 6 5 4 31 31 H 1.08003 * 119.96934 * 180.25320 * 7 6 5 32 32 H 1.08991 * 109.47386 * 299.99689 * 11 9 8 33 33 H 1.08995 * 109.47462 * 60.00311 * 11 9 8 34 34 H 1.09007 * 109.46589 * 180.02562 * 11 9 8 35 35 H 1.08992 * 109.47199 * 179.97438 * 15 13 12 36 36 H 1.09001 * 109.46962 * 300.00183 * 15 13 12 37 37 H 1.09004 * 109.46832 * 60.00020 * 15 13 12 38 38 H 1.09007 * 109.46999 * 185.00309 * 16 13 12 39 39 H 1.09001 * 109.47114 * 304.99503 * 16 13 12 40 40 H 0.96994 * 119.99826 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3754 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6760 0.0005 7 6 4.0558 2.5173 0.0048 8 6 3.4311 1.2849 -0.0010 9 6 4.2537 0.0223 -0.0015 10 1 3.7466 -0.7415 -0.5910 11 6 4.4273 -0.4738 1.4353 12 16 5.8822 0.3621 -0.7248 13 6 6.6546 -1.2784 -0.7796 14 1 6.6406 -1.7200 0.2168 15 6 5.8786 -2.1755 -1.7460 16 6 8.1018 -1.1450 -1.2580 17 6 8.8963 -0.3640 -0.2433 18 1 8.4170 0.0011 0.6529 19 6 10.2350 -0.1147 -0.4596 20 7 10.8186 -0.5589 -1.5513 21 14 11.2197 0.8541 0.7979 22 1 11.8090 -0.0796 1.7909 23 1 12.3069 1.5961 0.1102 24 1 10.3262 1.8158 1.4920 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2126 2.3204 0.0002 29 1 1.3338 4.5114 0.0011 30 1 3.7921 4.6382 0.0005 31 1 5.1343 2.5754 0.0085 32 1 4.9345 0.2899 2.0247 33 1 3.4489 -0.6780 1.8700 34 1 5.0228 -1.3869 1.4349 35 1 6.3430 -3.1610 -1.7793 36 1 4.8476 -2.2706 -1.4052 37 1 5.8926 -1.7339 -2.7425 38 1 8.5383 -2.1369 -1.3761 39 1 8.1215 -0.6232 -2.2148 40 1 11.7605 -0.3837 -1.7033 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298351913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:37 Heat of formation + Delta-G solvation = -48.776315 kcal Electronic energy + Delta-G solvation = -19571.896929 eV Core-core repulsion = 16669.886219 eV Total energy + Delta-G solvation = -2902.010711 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19450 -38.37196 -36.41689 -35.24215 -33.98633 -31.13312 -30.45039 -29.33912 -28.07347 -25.32864 -24.90777 -23.09291 -22.56793 -21.84497 -18.94745 -18.47749 -17.44779 -17.26173 -16.66032 -16.54935 -16.40148 -15.74083 -15.43371 -15.12807 -14.70122 -14.39706 -14.29046 -14.12998 -13.67043 -13.60059 -13.30398 -13.18909 -12.94185 -12.70122 -12.67216 -12.50870 -12.38057 -12.24791 -11.99169 -11.82195 -11.54445 -11.33780 -11.18043 -10.58037 -10.33173 -9.80037 -9.09586 -8.41596 -8.16706 -6.23977 0.33422 0.47563 0.95152 1.40126 1.41613 1.53257 1.89489 2.40331 2.43699 2.81346 3.18207 3.61638 3.96286 4.08490 4.13035 4.18437 4.19324 4.27243 4.35136 4.43989 4.47448 4.52085 4.55255 4.73101 4.75889 4.79811 4.84458 4.93548 5.00987 5.06118 5.15372 5.24175 5.35325 5.40885 5.49869 5.56554 5.63795 5.81300 5.87606 6.24363 6.47663 6.88064 7.43032 8.95505 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.004548 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.341395 B = 6154.785519 C = 6886.612156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.125 3.875 4 C -0.207 4.207 5 C -0.079 4.079 6 C -0.160 4.160 7 C -0.088 4.088 8 C -0.112 4.112 9 C -0.006 4.006 10 H 0.089 0.911 11 C -0.130 4.130 12 S -0.264 6.264 13 C -0.041 4.041 14 H 0.074 0.926 15 C -0.135 4.135 16 C 0.048 3.952 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.957 3.043 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.266 1.266 25 H 0.065 0.935 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.140 0.860 31 H 0.120 0.880 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.009 0.991 39 H -0.006 1.006 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.728 4.313 4.582 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.078 3.922 4 C -0.225 4.225 5 C -0.097 4.097 6 C -0.179 4.179 7 C -0.107 4.107 8 C -0.114 4.114 9 C -0.134 4.134 10 H 0.108 0.892 11 C -0.188 4.188 12 S -0.034 6.034 13 C -0.169 4.169 14 H 0.092 0.908 15 C -0.194 4.194 16 C 0.010 3.990 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.195 4.195 20 N -0.576 5.576 21 Si 0.783 3.217 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.190 1.190 25 H 0.083 0.917 26 H 0.133 0.867 27 H 0.086 0.914 28 H 0.174 0.826 29 H 0.174 0.826 30 H 0.157 0.843 31 H 0.138 0.862 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.027 0.973 39 H 0.013 0.987 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.047 5.065 4.159 23.961 hybrid contribution 0.539 -0.774 0.592 1.113 sum -22.508 4.292 4.751 23.401 Atomic orbital electron populations 1.23346 0.76445 1.05449 1.02374 1.86068 1.23416 1.26608 1.88572 1.18856 0.90882 0.85450 0.96979 1.21496 1.01153 0.91536 1.08331 1.21313 0.94165 0.98131 0.96127 1.21307 0.94709 0.98238 1.03604 1.21080 1.00346 0.91923 0.97353 1.18763 0.90782 0.93995 1.07851 1.21760 0.93960 0.97967 0.99743 0.89244 1.21911 1.02175 1.01033 0.93727 1.87108 1.14979 1.17853 1.83504 1.23187 0.98618 0.93409 1.01709 0.90777 1.22012 0.99360 0.99168 0.98903 1.18798 0.88863 0.95835 0.95540 1.21555 0.94583 1.33685 1.06055 0.91972 1.25858 0.99147 0.97100 0.97428 1.70089 1.11890 1.47929 1.27719 0.85552 0.78200 0.78946 0.79051 1.19704 1.20940 1.19033 0.91651 0.86686 0.91355 0.82555 0.82577 0.84264 0.86216 0.92489 0.90713 0.92586 0.91466 0.91649 0.92629 0.97265 0.98724 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.58 9.63 -92.56 -0.89 -8.47 16 3 C 0.13 3.14 6.66 22.51 0.15 3.29 16 4 C -0.21 -4.01 9.04 22.36 0.20 -3.81 16 5 C -0.08 -1.50 10.04 22.25 0.22 -1.28 16 6 C -0.16 -3.80 10.04 22.28 0.22 -3.57 16 7 C -0.09 -2.66 9.10 22.25 0.20 -2.46 16 8 C -0.11 -3.39 5.01 -19.77 -0.10 -3.49 16 9 C -0.01 -0.19 2.51 29.85 0.07 -0.11 16 10 H 0.09 2.88 6.48 -2.39 -0.02 2.87 16 11 C -0.13 -3.89 9.08 71.98 0.65 -3.24 16 12 S -0.26 -10.86 17.80 -56.49 -1.01 -11.86 16 13 C -0.04 -1.75 2.55 30.60 0.08 -1.68 16 14 H 0.07 3.14 6.93 -2.39 -0.02 3.12 16 15 C -0.14 -4.80 9.10 71.98 0.65 -4.14 16 16 C 0.05 2.56 4.45 29.85 0.13 2.69 16 17 C -0.52 -30.10 8.53 25.60 0.22 -29.88 16 18 H 0.06 3.54 7.60 -2.91 -0.02 3.51 16 19 C 0.00 0.11 5.46 84.65 0.46 0.57 16 20 N -0.94 -57.96 13.29 21.45 0.28 -57.67 16 21 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 25 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 26 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 28 H 0.16 1.98 6.30 -2.91 -0.02 1.96 16 29 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.12 4.13 6.49 -2.91 -0.02 4.11 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 34 H 0.06 1.71 6.79 -2.38 -0.02 1.69 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 1.99 6.79 -2.39 -0.02 1.98 16 37 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.01 0.52 8.14 -2.38 -0.02 0.51 16 39 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.26 15.30 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -69.00 337.07 5.71 -63.29 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.01 Total: 12.68 kcal Atomic # 6 Polarization: -50.06 SS G_CDS: 4.29 Total: -45.77 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.28 Total: -57.67 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.89 Total: -8.47 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: -10.86 SS G_CDS: -1.01 Total: -11.86 kcal Total: -69.00 5.71 -63.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298351913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.515 kcal (2) G-P(sol) polarization free energy of solvation -69.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds