Wall clock time and date at job start Fri Apr 10 2020 17:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99930 * 2 1 4 4 C 1.38747 * 120.05586 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94590 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05159 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11362 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05438 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.02715 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.46648 * 144.97915 * 9 8 7 11 11 C 1.52995 * 109.47205 * 264.98165 * 9 8 7 12 12 S 1.81396 * 109.46962 * 24.98322 * 9 8 7 13 13 C 1.81408 * 103.00056 * 174.99744 * 12 9 8 14 14 H 1.09000 * 109.46735 * 55.00268 * 13 12 9 15 15 C 1.52996 * 109.46903 * 295.00146 * 13 12 9 16 16 C 1.52995 * 109.47148 * 174.99651 * 13 12 9 17 17 C 1.50705 * 109.47428 * 295.00309 * 16 13 12 18 18 H 1.08002 * 119.99659 * 359.97438 * 17 16 13 19 19 C 1.37877 * 119.99900 * 180.02562 * 17 16 13 20 20 N 1.31517 * 120.00335 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99724 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47017 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46975 * 120.00086 * 21 19 17 24 24 H 1.48503 * 109.46676 * 239.99890 * 21 19 17 25 25 H 1.08998 * 109.47294 * 300.00489 * 1 2 3 26 26 H 1.08995 * 109.47056 * 60.00501 * 1 2 3 27 27 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.03046 * 0.02562 * 4 3 2 29 29 H 1.07993 * 119.97844 * 179.72247 * 5 4 3 30 30 H 1.08004 * 119.94567 * 179.97438 * 6 5 4 31 31 H 1.08001 * 119.97538 * 179.97438 * 7 6 5 32 32 H 1.08999 * 109.47002 * 180.02562 * 11 9 8 33 33 H 1.09002 * 109.47153 * 300.00208 * 11 9 8 34 34 H 1.09000 * 109.47521 * 60.00285 * 11 9 8 35 35 H 1.09006 * 109.46883 * 180.02562 * 15 13 12 36 36 H 1.09004 * 109.47034 * 299.99666 * 15 13 12 37 37 H 1.08997 * 109.47633 * 59.99585 * 15 13 12 38 38 H 1.09002 * 109.47327 * 55.00025 * 16 13 12 39 39 H 1.08993 * 109.47237 * 174.99968 * 16 13 12 40 40 H 0.96991 * 120.00033 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 4.0560 2.5171 0.0000 8 6 3.4311 1.2848 0.0005 9 6 4.2537 0.0221 0.0017 10 1 3.7466 -0.7413 0.5918 11 6 4.4270 -0.4751 -1.4348 12 16 5.8823 0.3621 0.7245 13 6 6.6547 -1.2784 0.7802 14 1 6.6405 -1.7206 -0.2159 15 6 5.8788 -2.1747 1.7473 16 6 8.1019 -1.1447 1.2582 17 6 8.8964 -0.3643 0.2428 18 1 8.4170 -0.0004 -0.6540 19 6 10.2353 -0.1157 0.4582 20 7 10.8192 -0.5593 1.5501 21 14 11.2202 0.8510 -0.8007 22 1 10.3374 1.2335 -1.9319 23 1 11.7698 2.0754 -0.1650 24 1 12.3363 0.0120 -1.3062 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2128 2.3203 -0.0005 29 1 1.3341 4.5113 -0.0060 30 1 3.7923 4.6380 -0.0014 31 1 5.1344 2.5751 0.0000 32 1 5.0216 -1.3886 -1.4339 33 1 3.4484 -0.6794 -1.8691 34 1 4.9342 0.2883 -2.0249 35 1 6.3432 -3.1603 1.7812 36 1 5.8931 -1.7324 2.7435 37 1 4.8478 -2.2699 1.4069 38 1 8.1220 -0.6222 2.2146 39 1 8.5384 -2.1363 1.3768 40 1 11.7612 -0.3848 1.7014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298351918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:39 Heat of formation + Delta-G solvation = -48.806500 kcal Electronic energy + Delta-G solvation = -19571.773651 eV Core-core repulsion = 16669.761631 eV Total energy + Delta-G solvation = -2902.012020 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19519 -38.37189 -36.41794 -35.24150 -33.98758 -31.13311 -30.45106 -29.34015 -28.07424 -25.32988 -24.90743 -23.09284 -22.56748 -21.84483 -18.94732 -18.48101 -17.44780 -17.26211 -16.66103 -16.54792 -16.40033 -15.74067 -15.43463 -15.12768 -14.70726 -14.39958 -14.28960 -14.12756 -13.67197 -13.60118 -13.30855 -13.18861 -12.94238 -12.70346 -12.68858 -12.49533 -12.36909 -12.25149 -11.99144 -11.82369 -11.54633 -11.32941 -11.17342 -10.58692 -10.33270 -9.79984 -9.09558 -8.41562 -8.16918 -6.24083 0.33498 0.47685 0.95097 1.39627 1.40803 1.54160 1.89440 2.40347 2.43526 2.81432 3.18075 3.61659 3.96361 4.08526 4.13116 4.18455 4.19330 4.27277 4.35182 4.43969 4.47468 4.52120 4.55322 4.73020 4.75897 4.79854 4.84465 4.93569 5.01015 5.06173 5.15342 5.24149 5.35395 5.41047 5.49939 5.56524 5.63873 5.81383 5.87697 6.24289 6.47723 6.88201 7.42974 8.95505 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.023037 B = 0.004547 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.137273 B = 6155.760675 C = 6886.739043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.125 3.875 4 C -0.207 4.207 5 C -0.079 4.079 6 C -0.160 4.160 7 C -0.088 4.088 8 C -0.112 4.112 9 C -0.006 4.006 10 H 0.089 0.911 11 C -0.130 4.130 12 S -0.264 6.264 13 C -0.041 4.041 14 H 0.074 0.926 15 C -0.135 4.135 16 C 0.047 3.953 17 C -0.519 4.519 18 H 0.062 0.938 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.958 3.042 22 H -0.264 1.264 23 H -0.281 1.281 24 H -0.278 1.278 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.115 0.885 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.140 0.860 31 H 0.120 0.880 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.065 0.935 38 H -0.005 1.005 39 H 0.009 0.991 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.739 4.315 -4.571 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.078 3.922 4 C -0.225 4.225 5 C -0.097 4.097 6 C -0.179 4.179 7 C -0.107 4.107 8 C -0.114 4.114 9 C -0.134 4.134 10 H 0.108 0.892 11 C -0.188 4.188 12 S -0.034 6.034 13 C -0.169 4.169 14 H 0.092 0.908 15 C -0.194 4.194 16 C 0.009 3.991 17 C -0.558 4.558 18 H 0.080 0.920 19 C -0.196 4.196 20 N -0.576 5.576 21 Si 0.783 3.217 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.203 1.203 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.133 0.867 28 H 0.174 0.826 29 H 0.174 0.826 30 H 0.157 0.843 31 H 0.138 0.862 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.013 0.987 39 H 0.028 0.972 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.060 5.064 -4.154 23.972 hybrid contribution 0.544 -0.770 -0.582 1.108 sum -22.516 4.294 -4.736 23.406 Atomic orbital electron populations 1.23347 0.76442 1.05448 1.02375 1.86065 1.23416 1.26616 1.88569 1.18851 0.90886 0.85450 0.96981 1.21496 1.01151 0.91541 1.08341 1.21313 0.94171 0.98126 0.96127 1.21307 0.94706 0.98243 1.03601 1.21080 1.00357 0.91915 0.97341 1.18763 0.90779 0.93995 1.07860 1.21760 0.93964 0.97970 0.99738 0.89249 1.21910 1.02176 1.01017 0.93741 1.87099 1.14966 1.17838 1.83517 1.23184 0.98620 0.93422 1.01699 0.90792 1.22012 0.99359 0.99174 0.98898 1.18802 0.88869 0.95847 0.95554 1.21589 0.94555 1.33626 1.06003 0.91964 1.25857 0.99150 0.97097 0.97448 1.70092 1.11867 1.47923 1.27753 0.85498 0.78525 0.78354 0.79337 1.18752 1.20691 1.20341 0.91641 0.91364 0.86687 0.82563 0.82581 0.84253 0.86188 0.92597 0.90720 0.92491 0.91467 0.92624 0.91652 0.98713 0.97249 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.58 9.63 -92.41 -0.89 -8.47 16 3 C 0.12 3.14 6.66 22.50 0.15 3.29 16 4 C -0.21 -4.01 9.04 22.36 0.20 -3.81 16 5 C -0.08 -1.50 10.04 22.25 0.22 -1.27 16 6 C -0.16 -3.79 10.04 22.28 0.22 -3.56 16 7 C -0.09 -2.66 9.10 22.25 0.20 -2.45 16 8 C -0.11 -3.39 5.01 -19.77 -0.10 -3.48 16 9 C -0.01 -0.19 2.51 29.85 0.07 -0.11 16 10 H 0.09 2.88 6.48 -2.39 -0.02 2.87 16 11 C -0.13 -3.90 9.08 71.98 0.65 -3.24 16 12 S -0.26 -10.83 17.79 -56.49 -1.01 -11.84 16 13 C -0.04 -1.75 2.55 30.59 0.08 -1.68 16 14 H 0.07 3.13 6.93 -2.39 -0.02 3.12 16 15 C -0.14 -4.80 9.10 71.98 0.65 -4.14 16 16 C 0.05 2.54 4.45 29.85 0.13 2.67 16 17 C -0.52 -30.03 8.53 25.60 0.22 -29.81 16 18 H 0.06 3.55 7.60 -2.91 -0.02 3.53 16 19 C 0.00 0.10 5.46 84.65 0.46 0.56 16 20 N -0.94 -57.92 13.29 21.45 0.28 -57.64 16 21 Si 0.96 45.81 29.54 68.60 2.03 47.83 16 22 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 25 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 26 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 27 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.16 1.98 6.30 -2.91 -0.02 1.96 16 29 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 31 H 0.12 4.13 6.48 -2.91 -0.02 4.11 16 32 H 0.06 1.70 6.80 -2.39 -0.02 1.69 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.06 1.99 6.79 -2.39 -0.02 1.98 16 38 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.26 15.25 8.31 -92.72 -0.77 14.47 16 Total: -1.00 -69.00 337.06 5.71 -63.29 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 1.01 Total: 12.55 kcal Atomic # 6 Polarization: -50.01 SS G_CDS: 4.29 Total: -45.72 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.28 Total: -57.64 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.89 Total: -8.47 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: -10.83 SS G_CDS: -1.01 Total: -11.84 kcal Total: -69.00 5.71 -63.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298351918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.481 kcal (2) G-P(sol) polarization free energy of solvation -69.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds