Wall clock time and date at job start Fri Apr 10 2020 17:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47081 * 2 1 4 4 C 1.36700 * 119.99978 * 97.74190 * 3 2 1 5 5 H 1.08000 * 119.99944 * 165.22392 * 4 3 2 6 6 C 1.39160 * 120.00212 * 345.21883 * 4 3 2 7 7 N 1.31282 * 119.99987 * 337.75989 * 6 4 3 8 8 Si 1.86802 * 120.00210 * 157.75592 * 6 4 3 9 9 H 1.48497 * 109.47339 * 59.99926 * 8 6 4 10 10 H 1.48498 * 109.47497 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47052 * 300.00275 * 8 6 4 12 12 C 1.34772 * 119.99933 * 277.73704 * 3 2 1 13 13 O 1.21547 * 120.00181 * 185.79140 * 12 3 2 14 14 C 1.48256 * 120.00186 * 5.79506 * 12 3 2 15 15 C 1.39298 * 120.48428 * 175.37866 * 14 12 3 16 16 C 1.39541 * 118.35955 * 180.02562 * 15 14 12 17 17 O 1.35512 * 120.43839 * 180.02562 * 16 15 14 18 18 N 1.32636 * 119.12545 * 359.97438 * 16 15 14 19 19 C 1.32545 * 120.88962 * 0.02562 * 18 16 15 20 20 N 1.38425 * 119.09810 * 179.97438 * 19 18 16 21 21 C 1.46503 * 120.00016 * 359.97438 * 20 19 18 22 22 C 1.46496 * 120.00000 * 179.72606 * 20 19 18 23 23 N 1.32261 * 121.80414 * 0.24910 * 19 18 16 24 24 H 1.09001 * 109.47342 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46883 * 300.00011 * 1 2 3 26 26 H 1.08999 * 109.47398 * 59.99884 * 1 2 3 27 27 H 1.09007 * 109.47400 * 240.00059 * 2 1 3 28 28 H 1.08999 * 109.47398 * 120.00116 * 2 1 3 29 29 H 0.97006 * 120.00195 * 179.97438 * 7 6 4 30 30 H 1.07998 * 120.81840 * 0.03209 * 15 14 12 31 31 H 0.96707 * 113.99266 * 269.97359 * 17 16 15 32 32 H 1.09001 * 109.46861 * 89.99967 * 21 20 19 33 33 H 1.09001 * 109.47350 * 210.00781 * 21 20 19 34 34 H 1.09002 * 109.46687 * 330.00834 * 21 20 19 35 35 H 1.08995 * 109.47665 * 59.99207 * 22 20 19 36 36 H 1.09001 * 109.47485 * 179.97438 * 22 20 19 37 37 H 1.09000 * 109.46989 * 299.99384 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3965 1.9725 1.1731 5 1 2.9723 2.8860 1.1563 6 6 2.0394 1.3974 2.3889 7 7 1.0148 0.5790 2.4522 8 14 3.0178 1.7898 3.9310 9 1 2.9617 3.2501 4.1947 10 1 2.4393 1.0555 5.0848 11 1 4.4310 1.3755 3.7394 12 6 2.0947 2.0689 -1.1565 13 8 2.5972 3.1755 -1.1736 14 6 1.5659 1.4757 -2.4081 15 6 1.5522 2.2139 -3.5893 16 6 1.0440 1.6121 -4.7412 17 8 1.0111 2.2915 -5.9132 18 7 0.5945 0.3660 -4.6739 19 6 0.6229 -0.3069 -3.5324 20 7 0.1437 -1.6053 -3.5043 21 6 -0.3859 -2.2172 -4.7254 22 6 0.1712 -2.3693 -2.2546 23 7 1.0917 0.2299 -2.4182 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.7661 0.1778 3.2997 30 1 1.9258 3.2269 -3.6130 31 1 0.1951 2.7905 -6.0557 32 1 0.4206 -2.7201 -5.2591 33 1 -1.1563 -2.9426 -4.4638 34 1 -0.8160 -1.4441 -5.3621 35 1 -0.4221 -1.8532 -1.5000 36 1 -0.2443 -3.3622 -2.4265 37 1 1.2004 -2.4609 -1.9074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331219554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:42 Heat of formation + Delta-G solvation = 33.510675 kcal Electronic energy + Delta-G solvation = -22916.338081 eV Core-core repulsion = 19503.895138 eV Total energy + Delta-G solvation = -3412.442943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75920 -38.42137 -37.65421 -35.91687 -35.11059 -32.97727 -31.67156 -30.33770 -29.47392 -27.95473 -25.82579 -25.37276 -23.76412 -22.13085 -21.90486 -19.76292 -18.27620 -17.74664 -16.77930 -16.46655 -15.79262 -15.28543 -15.08751 -14.70348 -14.53839 -14.22434 -14.08202 -13.86379 -13.04069 -12.83650 -12.57918 -12.48593 -12.30607 -11.95130 -11.84631 -11.66932 -11.27122 -11.06758 -10.78854 -10.51162 -10.30915 -10.28641 -10.03957 -9.66319 -9.47301 -9.06354 -8.85291 -8.25693 -7.81156 -7.54592 -6.53826 -3.91491 1.20700 1.51647 2.84301 3.09566 3.15619 3.19991 3.66379 3.83579 3.97616 4.45298 4.54139 4.93099 5.04069 5.14985 5.31249 5.43370 5.50183 5.55115 5.79099 5.84701 5.89804 5.99568 6.12027 6.46519 6.59034 6.77117 6.85478 7.00057 7.08642 7.18368 7.27890 7.37892 7.60508 7.68694 7.84461 7.96102 8.37029 8.64424 9.02467 9.25583 9.90013 10.39678 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022057 B = 0.006131 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.119142 B = 4565.581764 C = 5671.169613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.122 3.878 3 N -0.389 5.389 4 C -0.299 4.299 5 H 0.110 0.890 6 C 0.035 3.965 7 N -0.837 5.837 8 Si 0.928 3.072 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.270 1.270 12 C 0.455 3.545 13 O -0.592 6.592 14 C 0.213 3.787 15 C -0.259 4.259 16 C 0.385 3.615 17 O -0.479 6.479 18 N -0.599 5.599 19 C 0.571 3.429 20 N -0.596 5.596 21 C 0.108 3.892 22 C 0.100 3.900 23 N -0.535 5.535 24 H 0.034 0.966 25 H 0.084 0.916 26 H 0.028 0.972 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.273 0.727 30 H 0.152 0.848 31 H 0.402 0.598 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.809 -6.647 -8.251 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.001 4.001 3 N -0.103 5.103 4 C -0.428 4.428 5 H 0.127 0.873 6 C -0.172 4.172 7 N -0.473 5.473 8 Si 0.754 3.246 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.196 1.196 12 C 0.245 3.755 13 O -0.479 6.479 14 C 0.066 3.934 15 C -0.287 4.287 16 C 0.197 3.803 17 O -0.285 6.285 18 N -0.334 5.334 19 C 0.216 3.784 20 N -0.315 5.315 21 C -0.036 4.036 22 C -0.043 4.043 23 N -0.263 5.263 24 H 0.053 0.947 25 H 0.102 0.898 26 H 0.047 0.953 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.170 0.830 31 H 0.260 0.740 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.523 -7.527 -8.167 11.992 hybrid contribution 0.087 0.985 0.551 1.132 sum -4.436 -6.542 -7.616 10.977 Atomic orbital electron populations 1.22074 0.96388 0.99204 1.01373 1.21764 0.95155 0.82199 1.01003 1.43873 1.49501 1.11438 1.05474 1.19920 1.30841 1.10093 0.81938 0.87267 1.25456 0.95465 0.96625 0.99691 1.70078 1.21145 1.28828 1.27287 0.85957 0.80024 0.79113 0.79515 1.19444 1.20703 1.19568 1.17294 0.89397 0.86146 0.82704 1.90609 1.51510 1.20767 1.85036 1.21780 0.89512 0.87367 0.94717 1.22420 1.10209 1.04292 0.91814 1.18863 0.90393 0.86582 0.84432 1.84695 1.43147 1.64603 1.36091 1.67017 1.27247 1.10182 1.28979 1.19008 0.88613 0.86737 0.84055 1.45741 1.65723 1.09067 1.11003 1.21549 0.97834 0.98042 0.86148 1.21865 1.02800 0.94476 0.85159 1.68863 1.18002 1.13006 1.26409 0.94719 0.89773 0.95314 0.90777 0.90388 0.91610 0.83013 0.74023 0.93581 0.91718 0.90490 0.90750 0.91341 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.10 37.16 0.30 -2.51 16 2 C 0.12 2.75 4.86 -4.04 -0.02 2.73 16 3 N -0.39 -10.04 2.63 -115.76 -0.30 -10.34 16 4 C -0.30 -8.01 9.38 -15.04 -0.14 -8.15 16 5 H 0.11 3.07 7.32 -52.49 -0.38 2.68 16 6 C 0.04 0.86 4.88 -17.44 -0.09 0.78 16 7 N -0.84 -20.29 8.55 55.51 0.47 -19.81 16 8 Si 0.93 19.31 29.61 -169.99 -5.03 14.28 16 9 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 10 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 12 C 0.46 11.77 7.55 -12.14 -0.09 11.67 16 13 O -0.59 -16.81 16.04 5.32 0.09 -16.73 16 14 C 0.21 4.72 6.33 -82.72 -0.52 4.20 16 15 C -0.26 -5.11 9.67 -38.70 -0.37 -5.48 16 16 C 0.38 6.73 7.83 -16.72 -0.13 6.60 16 17 O -0.48 -6.75 13.57 -18.23 -0.25 -7.00 16 18 N -0.60 -10.71 9.11 -14.01 -0.13 -10.84 16 19 C 0.57 10.41 8.18 -323.01 -2.64 7.77 16 20 N -0.60 -8.84 3.37 -191.94 -0.65 -9.49 16 21 C 0.11 1.22 10.41 59.85 0.62 1.85 16 22 C 0.10 1.29 10.00 59.84 0.60 1.89 16 23 N -0.54 -10.79 3.40 -10.56 -0.04 -10.82 16 24 H 0.03 0.63 6.11 -51.93 -0.32 0.32 16 25 H 0.08 2.01 6.03 -51.93 -0.31 1.70 16 26 H 0.03 0.62 6.15 -51.93 -0.32 0.30 16 27 H 0.07 1.60 5.18 -51.92 -0.27 1.33 16 28 H 0.08 1.85 6.12 -51.93 -0.32 1.53 16 29 H 0.27 6.21 8.31 -40.82 -0.34 5.88 16 30 H 0.15 2.95 7.73 -52.49 -0.41 2.54 16 31 H 0.40 3.44 9.06 45.56 0.41 3.85 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.56 7.92 -51.93 -0.41 0.15 16 34 H 0.08 0.94 7.33 -51.93 -0.38 0.55 16 35 H 0.07 1.06 4.98 -51.93 -0.26 0.81 16 36 H 0.07 0.65 7.80 -51.93 -0.40 0.25 16 37 H 0.06 0.83 7.78 -51.93 -0.40 0.42 16 LS Contribution 300.76 15.07 4.53 4.53 Total: -1.00 -31.15 300.76 -7.12 -38.27 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -3.33 Total: 6.60 kcal Atomic # 6 Polarization: 23.83 SS G_CDS: -2.48 Total: 21.35 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.64 Total: -61.30 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.16 Total: -23.73 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.15 -7.12 -38.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331219554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.780 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds