Wall clock time and date at job start Fri Apr 10 2020 17:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47081 * 2 1 4 4 C 1.36700 * 119.99978 * 97.74190 * 3 2 1 5 5 H 1.08000 * 119.99944 * 165.22392 * 4 3 2 6 6 C 1.39160 * 120.00212 * 345.21883 * 4 3 2 7 7 N 1.31282 * 119.99987 * 337.75989 * 6 4 3 8 8 Si 1.86802 * 120.00210 * 157.75592 * 6 4 3 9 9 H 1.48497 * 109.47339 * 59.99926 * 8 6 4 10 10 H 1.48498 * 109.47497 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47052 * 300.00275 * 8 6 4 12 12 C 1.34772 * 119.99933 * 277.73704 * 3 2 1 13 13 O 1.21547 * 120.00181 * 185.79140 * 12 3 2 14 14 C 1.48256 * 120.00186 * 5.79506 * 12 3 2 15 15 C 1.39298 * 120.48428 * 175.37866 * 14 12 3 16 16 C 1.39541 * 118.35955 * 180.02562 * 15 14 12 17 17 O 1.35512 * 120.43839 * 180.02562 * 16 15 14 18 18 N 1.32636 * 119.12545 * 359.97438 * 16 15 14 19 19 C 1.32545 * 120.88962 * 0.02562 * 18 16 15 20 20 N 1.38425 * 119.09810 * 179.97438 * 19 18 16 21 21 C 1.46503 * 120.00016 * 359.97438 * 20 19 18 22 22 C 1.46496 * 120.00000 * 179.72606 * 20 19 18 23 23 N 1.32261 * 121.80414 * 0.24910 * 19 18 16 24 24 H 1.09001 * 109.47342 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46883 * 300.00011 * 1 2 3 26 26 H 1.08999 * 109.47398 * 59.99884 * 1 2 3 27 27 H 1.09007 * 109.47400 * 240.00059 * 2 1 3 28 28 H 1.08999 * 109.47398 * 120.00116 * 2 1 3 29 29 H 0.97006 * 120.00195 * 179.97438 * 7 6 4 30 30 H 1.07998 * 120.81840 * 0.03209 * 15 14 12 31 31 H 0.96707 * 113.99266 * 269.97359 * 17 16 15 32 32 H 1.09001 * 109.46861 * 89.99967 * 21 20 19 33 33 H 1.09001 * 109.47350 * 210.00781 * 21 20 19 34 34 H 1.09002 * 109.46687 * 330.00834 * 21 20 19 35 35 H 1.08995 * 109.47665 * 59.99207 * 22 20 19 36 36 H 1.09001 * 109.47485 * 179.97438 * 22 20 19 37 37 H 1.09000 * 109.46989 * 299.99384 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3965 1.9725 1.1731 5 1 2.9723 2.8860 1.1563 6 6 2.0394 1.3974 2.3889 7 7 1.0148 0.5790 2.4522 8 14 3.0178 1.7898 3.9310 9 1 2.9617 3.2501 4.1947 10 1 2.4393 1.0555 5.0848 11 1 4.4310 1.3755 3.7394 12 6 2.0947 2.0689 -1.1565 13 8 2.5972 3.1755 -1.1736 14 6 1.5659 1.4757 -2.4081 15 6 1.5522 2.2139 -3.5893 16 6 1.0440 1.6121 -4.7412 17 8 1.0111 2.2915 -5.9132 18 7 0.5945 0.3660 -4.6739 19 6 0.6229 -0.3069 -3.5324 20 7 0.1437 -1.6053 -3.5043 21 6 -0.3859 -2.2172 -4.7254 22 6 0.1712 -2.3693 -2.2546 23 7 1.0917 0.2299 -2.4182 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.7661 0.1778 3.2997 30 1 1.9258 3.2269 -3.6130 31 1 0.1951 2.7905 -6.0557 32 1 0.4206 -2.7201 -5.2591 33 1 -1.1563 -2.9426 -4.4638 34 1 -0.8160 -1.4441 -5.3621 35 1 -0.4221 -1.8532 -1.5000 36 1 -0.2443 -3.3622 -2.4265 37 1 1.2004 -2.4609 -1.9074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331219554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:41 Heat of formation + Delta-G solvation = 12.222588 kcal Electronic energy + Delta-G solvation = -22917.261201 eV Core-core repulsion = 19503.895138 eV Total energy + Delta-G solvation = -3413.366063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.25866 -40.24165 -38.91300 -37.31099 -36.93975 -34.56756 -33.48094 -31.78126 -31.26347 -29.04337 -27.59509 -26.65315 -25.42416 -23.91008 -23.29529 -21.34938 -19.66786 -19.36912 -18.67237 -17.78080 -17.33637 -16.84482 -16.61090 -16.35691 -15.99600 -15.78705 -15.59076 -15.35076 -14.66314 -14.55289 -14.17604 -13.86918 -13.43402 -13.29780 -13.12575 -13.04814 -12.83001 -12.73840 -12.47944 -12.13993 -12.06706 -11.91774 -11.57352 -11.19955 -11.04277 -10.88731 -10.76593 -9.96825 -9.67234 -8.84237 -8.41125 -5.93379 -0.36473 0.07622 1.40574 1.45007 1.54170 1.62052 1.98949 2.22804 2.48740 2.76774 2.83920 3.13727 3.44850 3.70956 4.04519 4.20457 4.36628 4.47151 4.58639 4.63912 4.73839 4.82841 4.91837 4.97483 5.05444 5.10555 5.17153 5.34163 5.37202 5.51861 5.80379 5.88112 5.99188 6.00686 6.30852 6.46967 6.57127 7.05264 7.20282 7.33726 7.95061 8.51196 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022057 B = 0.006131 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.119142 B = 4565.581764 C = 5671.169613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.131 3.869 3 N -0.400 5.400 4 C -0.351 4.351 5 H 0.081 0.919 6 C 0.012 3.988 7 N -0.843 5.843 8 Si 0.992 3.008 9 H -0.274 1.274 10 H -0.263 1.263 11 H -0.270 1.270 12 C 0.440 3.560 13 O -0.633 6.633 14 C 0.199 3.801 15 C -0.271 4.271 16 C 0.409 3.591 17 O -0.473 6.473 18 N -0.592 5.592 19 C 0.562 3.438 20 N -0.590 5.590 21 C 0.103 3.897 22 C 0.096 3.904 23 N -0.545 5.545 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.020 0.980 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.282 0.718 30 H 0.147 0.853 31 H 0.429 0.571 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.023 -8.857 -9.236 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.009 3.991 3 N -0.113 5.113 4 C -0.480 4.480 5 H 0.099 0.901 6 C -0.195 4.195 7 N -0.478 5.478 8 Si 0.815 3.185 9 H -0.199 1.199 10 H -0.187 1.187 11 H -0.195 1.195 12 C 0.230 3.770 13 O -0.523 6.523 14 C 0.053 3.947 15 C -0.300 4.300 16 C 0.219 3.781 17 O -0.283 6.283 18 N -0.327 5.327 19 C 0.206 3.794 20 N -0.308 5.308 21 C -0.039 4.039 22 C -0.046 4.046 23 N -0.273 5.273 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.165 0.835 31 H 0.292 0.708 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.802 -9.807 -9.158 14.619 hybrid contribution 0.362 1.596 0.649 1.760 sum -5.440 -8.211 -8.509 13.016 Atomic orbital electron populations 1.21855 0.95195 1.00530 0.99453 1.21773 0.95912 0.80741 1.00671 1.44072 1.49540 1.12385 1.05284 1.19825 1.33654 1.10957 0.83545 0.90117 1.26151 0.95743 0.96081 1.01508 1.70129 1.20865 1.28373 1.28438 0.85031 0.78550 0.78665 0.76297 1.19943 1.18702 1.19532 1.17885 0.89130 0.86009 0.84002 1.90542 1.53160 1.22561 1.86087 1.21278 0.90871 0.88745 0.93838 1.22416 1.11243 1.04178 0.92145 1.18798 0.88330 0.86468 0.84521 1.84645 1.45210 1.64605 1.33866 1.67215 1.26871 1.10041 1.28557 1.19393 0.88402 0.88072 0.83581 1.46168 1.64132 1.07678 1.12774 1.21805 0.98965 0.98341 0.84765 1.21991 1.02266 0.96081 0.84247 1.68687 1.18695 1.12231 1.27670 0.91717 0.92513 0.96140 0.89750 0.91736 0.90735 0.83484 0.70759 0.92637 0.88203 0.91242 0.92110 0.87070 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.77 8.10 71.98 0.58 -4.19 16 2 C 0.13 6.04 4.86 86.38 0.42 6.46 16 3 N -0.40 -21.57 2.63 -638.42 -1.68 -23.25 16 4 C -0.35 -19.83 9.38 84.16 0.79 -19.04 16 5 H 0.08 4.89 7.32 -2.91 -0.02 4.87 16 6 C 0.01 0.62 4.88 85.00 0.41 1.04 16 7 N -0.84 -41.08 8.55 21.70 0.19 -40.89 16 8 Si 0.99 40.01 29.61 68.60 2.03 42.04 16 9 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 11 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 12 C 0.44 23.90 7.55 86.91 0.66 24.55 16 13 O -0.63 -38.25 16.04 -3.86 -0.06 -38.31 16 14 C 0.20 9.03 6.33 41.84 0.26 9.29 16 15 C -0.27 -10.75 9.67 22.84 0.22 -10.53 16 16 C 0.41 13.62 7.83 84.89 0.66 14.28 16 17 O -0.47 -12.06 13.57 -88.15 -1.20 -13.25 16 18 N -0.59 -19.82 9.11 -310.99 -2.83 -22.66 16 19 C 0.56 19.47 8.18 261.56 2.14 21.60 16 20 N -0.59 -15.71 3.37 -761.18 -2.57 -18.28 16 21 C 0.10 1.93 10.41 127.77 1.33 3.26 16 22 C 0.10 2.20 10.00 127.77 1.28 3.48 16 23 N -0.54 -21.79 3.40 -187.33 -0.64 -22.42 16 24 H 0.06 2.29 6.11 -2.39 -0.01 2.28 16 25 H 0.06 2.73 6.03 -2.39 -0.01 2.72 16 26 H 0.02 0.88 6.15 -2.39 -0.01 0.86 16 27 H 0.08 3.69 5.18 -2.38 -0.01 3.68 16 28 H 0.06 3.11 6.12 -2.39 -0.01 3.09 16 29 H 0.28 12.61 8.31 -92.70 -0.77 11.84 16 30 H 0.15 5.88 7.73 -2.91 -0.02 5.86 16 31 H 0.43 5.95 9.06 -74.05 -0.67 5.28 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 1.20 7.92 -2.39 -0.02 1.19 16 34 H 0.07 1.44 7.33 -2.39 -0.02 1.42 16 35 H 0.06 1.58 4.98 -2.39 -0.01 1.57 16 36 H 0.11 1.60 7.80 -2.39 -0.02 1.58 16 37 H 0.05 1.26 7.78 -2.39 -0.02 1.24 16 Total: -1.00 -70.54 300.76 2.46 -68.08 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.46 Total: 18.74 kcal Atomic # 6 Polarization: 41.44 SS G_CDS: 8.76 Total: 50.20 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -7.53 Total: -127.50 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -1.26 Total: -51.56 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -70.54 2.46 -68.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331219554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.304 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds