Wall clock time and date at job start Fri Apr 10 2020 17:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46890 * 2 1 4 4 C 1.52999 * 109.47135 * 120.00214 * 2 1 3 5 5 H 1.08999 * 109.47105 * 304.99920 * 4 2 1 6 6 C 1.52996 * 109.47003 * 185.00386 * 4 2 1 7 7 S 1.81396 * 109.47127 * 65.00144 * 4 2 1 8 8 O 1.42094 * 109.47269 * 58.61060 * 7 4 2 9 9 C 1.81400 * 102.99919 * 174.99973 * 7 4 2 10 10 C 1.50701 * 109.47182 * 179.97438 * 9 7 4 11 11 C 1.38629 * 119.75143 * 269.72674 * 10 9 7 12 12 C 1.37621 * 120.24726 * 179.71768 * 11 10 9 13 13 C 1.40718 * 119.74593 * 0.57630 * 12 11 10 14 14 C 1.41388 * 120.24912 * 179.67722 * 13 12 11 15 15 H 1.08001 * 120.00562 * 204.41067 * 14 13 12 16 16 C 1.39946 * 120.00056 * 24.40810 * 14 13 12 17 17 N 1.30825 * 119.99891 * 17.84700 * 16 14 13 18 18 Si 1.86803 * 120.00426 * 197.84675 * 16 14 13 19 19 H 1.48501 * 109.46786 * 89.99834 * 18 16 14 20 20 H 1.48497 * 109.46869 * 209.99692 * 18 16 14 21 21 H 1.48497 * 109.46914 * 330.00044 * 18 16 14 22 22 C 1.40718 * 119.50880 * 359.70377 * 13 12 11 23 23 C 1.37620 * 119.74713 * 359.97438 * 22 13 12 24 24 H 1.09003 * 109.47355 * 59.99576 * 1 2 3 25 25 H 1.09000 * 109.47121 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47178 * 299.99587 * 1 2 3 27 27 H 1.08994 * 109.47109 * 240.00499 * 2 1 3 28 28 H 1.09003 * 109.47096 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47714 * 300.00147 * 3 2 1 30 30 H 1.09003 * 109.46873 * 60.00226 * 3 2 1 31 31 H 1.08996 * 109.47624 * 59.99865 * 6 4 2 32 32 H 1.09003 * 109.47206 * 180.02562 * 6 4 2 33 33 H 1.08999 * 109.46809 * 299.99715 * 6 4 2 34 34 H 1.08996 * 109.47701 * 300.00221 * 9 7 4 35 35 H 1.09001 * 109.47338 * 59.99816 * 9 7 4 36 36 H 1.07997 * 119.88148 * 359.97438 * 11 10 9 37 37 H 1.07998 * 120.12966 * 180.28018 * 12 11 10 38 38 H 0.96998 * 120.00647 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.13071 * 179.97438 * 22 13 12 40 40 H 1.07995 * 119.88047 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6054 -0.2618 2.1369 6 6 3.5648 -0.6132 1.3137 7 16 1.5602 -2.4691 1.1765 8 8 2.1001 -3.0601 0.0025 9 6 2.3711 -3.1760 2.6371 10 6 2.0628 -4.6488 2.7193 11 6 0.9478 -5.0801 3.4212 12 6 0.6534 -6.4223 3.4980 13 6 1.4959 -7.3589 2.8710 14 6 1.2072 -8.7408 2.9489 15 1 1.9999 -9.4654 2.8346 16 6 -0.1056 -9.1698 3.1741 17 7 -1.1055 -8.3516 2.9685 18 14 -0.4305 -10.9107 3.7685 19 1 -0.4317 -10.9347 5.2533 20 1 -1.7508 -11.3673 3.2650 21 1 0.6328 -11.8139 3.2597 22 6 2.6281 -6.9100 2.1662 23 6 2.8994 -5.5625 2.0969 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.8532 0.4370 1.3574 32 1 3.9282 -1.1275 2.2034 33 1 3.9994 -1.0727 0.4259 34 1 3.4489 -3.0339 2.5588 35 1 2.0032 -2.6775 3.5339 36 1 0.3054 -4.3600 3.9060 37 1 -0.2183 -6.7558 4.0415 38 1 -2.0155 -8.6487 3.1249 39 1 3.2818 -7.6200 1.6816 40 1 3.7675 -5.2156 1.5563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342148876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:17:46 Heat of formation + Delta-G solvation = -46.164403 kcal Electronic energy + Delta-G solvation = -19407.730560 eV Core-core repulsion = 16505.833110 eV Total energy + Delta-G solvation = -2901.897450 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -37.62449 -36.95951 -35.12281 -33.99737 -31.44313 -30.58737 -29.30688 -27.47619 -27.34463 -23.95938 -23.73773 -21.03512 -20.36988 -19.77645 -17.32327 -17.24433 -15.81656 -15.41338 -15.10370 -14.44823 -14.25984 -14.17698 -13.80865 -13.69474 -13.41565 -12.71240 -12.62229 -12.47244 -12.35536 -12.01270 -11.96949 -11.73324 -11.64794 -11.31484 -11.21612 -11.06143 -10.92198 -10.82150 -10.74359 -10.62355 -10.44191 -9.81116 -9.49383 -9.39907 -9.09380 -7.85536 -7.48565 -7.18142 -6.79704 -4.36470 1.83702 2.76985 3.04354 3.06813 3.07613 3.09701 3.29704 3.91015 4.22134 4.59602 4.67637 4.74598 4.96772 5.25792 5.37935 5.40379 5.53965 5.58677 5.64912 5.68469 5.74021 5.75529 5.80468 5.82790 5.99370 6.09270 6.20059 6.28058 6.30592 6.35371 6.38382 6.92932 7.04493 7.23607 7.32834 7.58160 7.82326 8.01928 8.05304 8.26659 8.60175 8.85984 8.93819 10.14533 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.038793 B = 0.003647 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.606087 B = 7675.867075 C = 7988.455488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.073 4.073 3 C -0.144 4.144 4 C -0.423 4.423 5 H 0.116 0.884 6 C -0.148 4.148 7 S 1.226 4.774 8 O -0.840 6.840 9 C -0.359 4.359 10 C -0.206 4.206 11 C -0.093 4.093 12 C -0.165 4.165 13 C 0.113 3.887 14 C -0.459 4.459 15 H 0.078 0.922 16 C 0.076 3.924 17 N -0.789 5.789 18 Si 0.909 3.091 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.224 4.224 23 C -0.075 4.075 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.282 0.718 39 H 0.092 0.908 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 14.559 0.225 14.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.092 4.092 3 C -0.202 4.202 4 C -0.538 4.538 5 H 0.134 0.866 6 C -0.205 4.205 7 S 1.427 4.573 8 O -0.835 6.835 9 C -0.496 4.496 10 C -0.210 4.210 11 C -0.113 4.113 12 C -0.185 4.185 13 C 0.110 3.890 14 C -0.488 4.488 15 H 0.096 0.904 16 C -0.142 4.142 17 N -0.414 5.414 18 Si 0.734 3.266 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.244 4.244 23 C -0.094 4.094 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.401 14.188 -0.503 14.266 hybrid contribution 2.103 -0.474 0.186 2.164 sum 0.702 13.714 -0.317 13.735 Atomic orbital electron populations 1.21971 0.94633 1.02353 1.02346 1.20756 0.95910 0.96119 0.96408 1.21878 1.01107 0.95769 1.01452 1.27784 1.01399 1.21227 1.03416 0.86589 1.21876 0.93975 1.02648 1.02022 1.70667 1.16900 0.83397 0.86354 1.93093 1.79617 1.70782 1.40047 1.26193 1.07652 1.02331 1.13436 1.18281 1.01232 0.90011 1.11462 1.20546 0.95724 0.95912 0.99079 1.21311 1.02199 0.91534 1.03445 1.17659 0.90194 0.93504 0.87659 1.19644 0.93720 0.92526 1.42949 0.90368 1.25926 0.95871 0.99809 0.92640 1.69819 1.00319 1.37169 1.34065 0.86294 0.78461 0.82013 0.79867 1.19227 1.20247 1.18637 1.20961 1.02571 0.93958 1.06880 1.20395 0.97407 0.93600 0.98031 0.92266 0.92074 0.91802 0.90977 0.92639 0.92887 0.92600 0.92116 0.92341 0.92565 0.90573 0.87573 0.88732 0.86115 0.90740 0.88963 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.02 37.16 0.34 -1.12 16 2 C -0.07 -0.81 2.50 -90.62 -0.23 -1.04 16 3 C -0.14 -1.34 8.71 37.16 0.32 -1.02 16 4 C -0.42 -4.94 2.47 -26.73 -0.07 -5.00 16 5 H 0.12 1.05 8.14 -51.92 -0.42 0.63 16 6 C -0.15 -1.82 8.45 37.16 0.31 -1.51 16 7 S 1.23 18.79 11.46 -107.50 -1.23 17.56 16 8 O -0.84 -18.16 18.07 -35.23 -0.64 -18.80 16 9 C -0.36 -5.99 5.44 36.01 0.20 -5.79 16 10 C -0.21 -4.48 5.16 -104.33 -0.54 -5.02 16 11 C -0.09 -2.05 9.67 -39.66 -0.38 -2.44 16 12 C -0.17 -4.18 8.70 -38.87 -0.34 -4.52 16 13 C 0.11 3.02 5.57 -106.83 -0.60 2.43 16 14 C -0.46 -12.17 9.05 -37.74 -0.34 -12.51 16 15 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 16 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 17 N -0.79 -19.91 10.95 55.55 0.61 -19.30 16 18 Si 0.91 18.40 29.60 -169.99 -5.03 13.37 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 22 C -0.22 -5.74 9.80 -38.87 -0.38 -6.12 16 23 C -0.07 -1.80 9.67 -39.66 -0.38 -2.18 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.58 7.14 -51.93 -0.37 0.21 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 28 H 0.05 0.53 6.34 -51.93 -0.33 0.20 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.64 6.34 -51.93 -0.33 0.31 16 32 H 0.06 0.70 6.51 -51.93 -0.34 0.37 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.28 6.84 -51.93 -0.36 0.92 16 35 H 0.11 1.42 8.08 -51.92 -0.42 1.00 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.12 3.10 6.16 -52.49 -0.32 2.77 16 38 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 39 H 0.09 2.26 8.06 -52.49 -0.42 1.83 16 40 H 0.08 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 335.47 15.07 5.06 5.06 Total: -1.00 -31.56 335.47 -9.65 -41.21 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.24 Total: 4.97 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: -2.17 Total: -44.06 kcal Atomic # 7 Polarization: -19.91 SS G_CDS: 0.61 Total: -19.30 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.64 Total: -18.80 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Atomic # 16 Polarization: 18.79 SS G_CDS: -1.23 Total: 17.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.56 -9.65 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342148876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.954 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds