Wall clock time and date at job start Fri Apr 10 2020 17:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99866 * 2 1 4 4 C 1.53000 * 109.47036 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47594 * 64.99992 * 4 3 2 6 6 C 1.42897 * 114.00272 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47365 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47272 * 184.99654 * 7 6 5 9 9 C 1.52995 * 109.47008 * 304.99911 * 7 6 5 10 10 N 1.46507 * 109.46754 * 64.99693 * 7 6 5 11 11 C 1.38816 * 119.99499 * 155.00179 * 10 7 6 12 12 C 1.39793 * 119.58930 * 359.97438 * 11 10 7 13 13 C 1.38600 * 119.49321 * 179.97438 * 12 11 10 14 14 C 1.38387 * 118.67920 * 359.97438 * 13 12 11 15 15 C 1.40550 * 119.14980 * 0.02562 * 14 13 12 16 16 C 1.41323 * 119.78478 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99690 * 353.67026 * 16 15 14 18 18 C 1.40023 * 119.99704 * 173.67736 * 16 15 14 19 19 N 1.30740 * 120.00740 * 6.27643 * 18 16 15 20 20 Si 1.86800 * 119.99442 * 186.28152 * 18 16 15 21 21 H 1.48500 * 109.47236 * 94.98575 * 20 18 16 22 22 H 1.48500 * 109.47186 * 214.97972 * 20 18 16 23 23 H 1.48494 * 109.47605 * 334.98353 * 20 18 16 24 24 N 1.31957 * 119.58345 * 179.97438 * 11 10 7 25 25 H 1.08996 * 109.46903 * 59.99929 * 1 2 3 26 26 H 1.09002 * 109.46753 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46909 * 300.00138 * 1 2 3 28 28 H 1.08993 * 109.47342 * 59.99872 * 3 2 1 29 29 H 1.08998 * 109.46982 * 299.99890 * 3 2 1 30 30 H 1.09006 * 109.47194 * 304.99562 * 4 3 2 31 31 H 1.09004 * 109.47149 * 185.00020 * 4 3 2 32 32 H 1.09001 * 109.47371 * 59.99547 * 6 5 4 33 33 H 1.08998 * 109.47073 * 299.99757 * 6 5 4 34 34 H 1.09001 * 109.47011 * 60.00025 * 9 7 6 35 35 H 1.09004 * 109.47085 * 179.97438 * 9 7 6 36 36 H 1.08999 * 109.47150 * 299.99854 * 9 7 6 37 37 H 0.96994 * 119.99757 * 335.00538 * 10 7 6 38 38 H 1.08001 * 120.25741 * 0.25382 * 12 11 10 39 39 H 1.07997 * 120.66022 * 180.02562 * 13 12 11 40 40 H 1.07996 * 120.42200 * 179.97438 * 14 13 12 41 41 H 0.97001 * 120.00538 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9650 0.5797 -1.2219 6 6 5.3812 0.4192 -1.3245 7 6 5.7247 -0.2350 -2.6643 8 1 6.7947 -0.4384 -2.7056 9 6 4.9503 -1.5471 -2.8045 10 7 5.3567 0.6684 -3.7574 11 6 6.0015 0.5734 -4.9830 12 6 7.0009 -0.3870 -5.1646 13 6 7.6430 -0.4804 -6.3894 14 6 7.2712 0.3864 -7.4020 15 6 6.2591 1.3306 -7.1578 16 6 5.8685 2.2220 -8.1825 17 1 6.4144 2.2464 -9.1140 18 6 4.7738 3.0736 -7.9899 19 7 4.1893 3.1331 -6.8219 20 14 4.1484 4.1245 -9.4019 21 1 3.0314 3.4231 -10.0842 22 1 3.6667 5.4264 -8.8745 23 1 5.2499 4.3596 -10.3697 24 7 5.6633 1.3909 -5.9621 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5683 0.8410 31 1 3.9785 2.1766 0.0889 32 1 5.7351 -0.2133 -0.5104 33 1 5.8629 1.3950 -1.2622 34 1 3.8803 -1.3436 -2.7632 35 1 5.1947 -2.0130 -3.7592 36 1 5.2240 -2.2192 -1.9912 37 1 4.6627 1.3328 -3.6246 38 1 7.2676 -1.0541 -4.3582 39 1 8.4175 -1.2157 -6.5505 40 1 7.7532 0.3386 -8.3673 41 1 3.4312 3.7234 -6.6884 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324223135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:18:50 Heat of formation + Delta-G solvation = -54.052202 kcal Electronic energy + Delta-G solvation = -21760.509812 eV Core-core repulsion = 18447.810201 eV Total energy + Delta-G solvation = -3312.699610 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.78490 -38.16344 -37.34544 -35.32292 -33.31460 -31.30494 -30.29588 -29.73294 -27.86841 -26.51418 -25.99394 -25.20831 -22.62994 -21.64499 -21.20760 -19.75015 -17.38563 -16.93846 -16.77443 -16.37597 -15.59449 -15.43824 -15.24504 -14.74103 -14.64536 -14.09609 -13.63307 -13.44201 -13.25679 -12.74001 -12.62718 -12.26775 -12.07455 -11.78566 -11.73427 -11.56984 -11.34649 -11.18173 -10.93696 -10.87271 -10.64651 -10.47871 -10.30808 -9.83637 -9.80753 -9.54557 -9.41211 -8.80705 -7.83631 -7.41724 -6.39796 -6.26273 -4.40219 2.93147 3.14925 3.18626 3.31427 3.36198 3.63156 3.69736 4.03617 4.29578 4.87316 4.90713 5.03452 5.10406 5.19567 5.21631 5.28762 5.38513 5.40200 5.47663 5.54227 5.64246 5.76291 5.93211 6.10922 6.16202 6.24008 6.39245 6.63791 6.81675 6.94433 6.97229 6.99772 7.04215 7.26141 7.33284 7.68707 7.89767 8.00810 8.25865 8.46870 8.81652 8.88651 9.21831 10.32836 10.48454 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015027 B = 0.004394 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.845897 B = 6370.815841 C = 7776.020512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.064 3.936 5 O -0.369 6.369 6 C 0.056 3.944 7 C 0.167 3.833 8 H 0.085 0.915 9 C -0.161 4.161 10 N -0.728 5.728 11 C 0.414 3.586 12 C -0.368 4.368 13 C -0.032 4.032 14 C -0.319 4.319 15 C 0.294 3.706 16 C -0.437 4.437 17 H 0.082 0.918 18 C 0.072 3.928 19 N -0.716 5.716 20 Si 0.903 3.097 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.262 1.262 24 N -0.533 5.533 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.399 0.601 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 -2.500 14.035 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.288 6.288 6 C -0.021 4.021 7 C 0.060 3.940 8 H 0.103 0.897 9 C -0.220 4.220 10 N -0.365 5.365 11 C 0.174 3.826 12 C -0.394 4.394 13 C -0.057 4.057 14 C -0.342 4.342 15 C 0.166 3.834 16 C -0.469 4.469 17 H 0.100 0.900 18 C -0.153 4.153 19 N -0.337 5.337 20 Si 0.728 3.272 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.186 1.186 24 N -0.254 5.254 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.952 -2.141 14.216 15.206 hybrid contribution 0.055 0.353 -0.433 0.561 sum -4.897 -1.788 13.784 14.737 Atomic orbital electron populations 1.22733 0.81267 1.02723 0.99809 1.87961 1.19425 1.27390 1.95359 1.22565 0.92576 0.85435 1.00833 1.22465 0.93251 0.97506 0.88089 1.88019 1.21855 1.81726 1.37238 1.22860 0.81855 0.99783 0.97627 1.20716 0.98899 0.89912 0.84503 0.89691 1.22175 1.01843 0.96694 1.01279 1.44168 1.43378 1.39648 1.09284 1.18553 0.87818 0.89763 0.86494 1.20627 1.09731 1.09677 0.99403 1.20591 0.96076 0.95974 0.93030 1.21521 1.08188 1.05185 0.99320 1.18200 0.86698 0.89410 0.89045 1.19570 1.11238 1.16024 1.00110 0.89961 1.26033 0.96424 0.96721 0.96083 1.70163 1.14729 1.27221 1.21617 0.86390 0.79742 0.79265 0.81809 1.19618 1.20311 1.18599 1.68226 1.31337 1.25965 0.99874 0.93886 0.89708 0.94427 0.92158 0.92101 0.92801 0.91925 0.92600 0.92848 0.91656 0.92251 0.93148 0.76597 0.89101 0.89058 0.88830 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.92 10.67 -40.08 -0.43 -5.35 16 3 C 0.06 0.68 6.32 37.16 0.23 0.92 16 4 C 0.06 0.72 6.32 37.16 0.23 0.96 16 5 O -0.37 -5.46 9.16 -40.08 -0.37 -5.83 16 6 C 0.06 0.76 5.68 37.16 0.21 0.97 16 7 C 0.17 2.76 2.66 -67.93 -0.18 2.57 16 8 H 0.09 1.38 6.44 -51.93 -0.33 1.04 16 9 C -0.16 -2.60 9.20 37.16 0.34 -2.26 16 10 N -0.73 -15.34 5.22 -53.90 -0.28 -15.62 16 11 C 0.41 10.39 7.63 -155.33 -1.18 9.21 16 12 C -0.37 -8.67 8.84 -38.87 -0.34 -9.01 16 13 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 14 C -0.32 -8.30 9.83 -38.66 -0.38 -8.68 16 15 C 0.29 8.40 6.54 -85.00 -0.56 7.84 16 16 C -0.44 -12.16 9.13 -37.74 -0.34 -12.50 16 17 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 18 C 0.07 1.90 5.49 -17.35 -0.10 1.80 16 19 N -0.72 -19.55 11.49 55.55 0.64 -18.91 16 20 Si 0.90 19.17 29.56 -169.99 -5.03 14.14 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 24 N -0.53 -15.15 7.92 -10.33 -0.08 -15.23 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.14 7.56 -51.93 -0.39 0.75 16 35 H 0.06 1.05 7.64 -51.93 -0.40 0.66 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.40 8.74 8.50 -40.82 -0.35 8.39 16 38 H 0.09 1.89 6.04 -52.49 -0.32 1.58 16 39 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.09 2.27 8.06 -52.49 -0.42 1.84 16 41 H 0.27 6.67 8.29 -40.82 -0.34 6.33 16 LS Contribution 343.99 15.07 5.18 5.18 Total: -1.00 -31.85 343.99 -8.12 -39.97 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -6.41 Total: 9.58 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.35 Total: -7.93 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.27 Total: -49.76 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.79 Total: -11.18 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.85 -8.12 -39.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324223135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.085 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds