Wall clock time and date at job start Fri Apr 10 2020 17:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99866 * 2 1 4 4 C 1.53000 * 109.47036 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47594 * 64.99992 * 4 3 2 6 6 C 1.42897 * 114.00272 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47365 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47272 * 184.99654 * 7 6 5 9 9 C 1.52995 * 109.47008 * 304.99911 * 7 6 5 10 10 N 1.46507 * 109.46754 * 64.99693 * 7 6 5 11 11 C 1.38816 * 119.99499 * 155.00179 * 10 7 6 12 12 C 1.39793 * 119.58930 * 359.97438 * 11 10 7 13 13 C 1.38600 * 119.49321 * 179.97438 * 12 11 10 14 14 C 1.38387 * 118.67920 * 359.97438 * 13 12 11 15 15 C 1.40550 * 119.14980 * 0.02562 * 14 13 12 16 16 C 1.41323 * 119.78478 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99690 * 353.67026 * 16 15 14 18 18 C 1.40023 * 119.99704 * 173.67736 * 16 15 14 19 19 N 1.30740 * 120.00740 * 6.27643 * 18 16 15 20 20 Si 1.86800 * 119.99442 * 186.28152 * 18 16 15 21 21 H 1.48500 * 109.47236 * 94.98575 * 20 18 16 22 22 H 1.48500 * 109.47186 * 214.97972 * 20 18 16 23 23 H 1.48494 * 109.47605 * 334.98353 * 20 18 16 24 24 N 1.31957 * 119.58345 * 179.97438 * 11 10 7 25 25 H 1.08996 * 109.46903 * 59.99929 * 1 2 3 26 26 H 1.09002 * 109.46753 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46909 * 300.00138 * 1 2 3 28 28 H 1.08993 * 109.47342 * 59.99872 * 3 2 1 29 29 H 1.08998 * 109.46982 * 299.99890 * 3 2 1 30 30 H 1.09006 * 109.47194 * 304.99562 * 4 3 2 31 31 H 1.09004 * 109.47149 * 185.00020 * 4 3 2 32 32 H 1.09001 * 109.47371 * 59.99547 * 6 5 4 33 33 H 1.08998 * 109.47073 * 299.99757 * 6 5 4 34 34 H 1.09001 * 109.47011 * 60.00025 * 9 7 6 35 35 H 1.09004 * 109.47085 * 179.97438 * 9 7 6 36 36 H 1.08999 * 109.47150 * 299.99854 * 9 7 6 37 37 H 0.96994 * 119.99757 * 335.00538 * 10 7 6 38 38 H 1.08001 * 120.25741 * 0.25382 * 12 11 10 39 39 H 1.07997 * 120.66022 * 180.02562 * 13 12 11 40 40 H 1.07996 * 120.42200 * 179.97438 * 14 13 12 41 41 H 0.97001 * 120.00538 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9650 0.5797 -1.2219 6 6 5.3812 0.4192 -1.3245 7 6 5.7247 -0.2350 -2.6643 8 1 6.7947 -0.4384 -2.7056 9 6 4.9503 -1.5471 -2.8045 10 7 5.3567 0.6684 -3.7574 11 6 6.0015 0.5734 -4.9830 12 6 7.0009 -0.3870 -5.1646 13 6 7.6430 -0.4804 -6.3894 14 6 7.2712 0.3864 -7.4020 15 6 6.2591 1.3306 -7.1578 16 6 5.8685 2.2220 -8.1825 17 1 6.4144 2.2464 -9.1140 18 6 4.7738 3.0736 -7.9899 19 7 4.1893 3.1331 -6.8219 20 14 4.1484 4.1245 -9.4019 21 1 3.0314 3.4231 -10.0842 22 1 3.6667 5.4264 -8.8745 23 1 5.2499 4.3596 -10.3697 24 7 5.6633 1.3909 -5.9621 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5683 0.8410 31 1 3.9785 2.1766 0.0889 32 1 5.7351 -0.2133 -0.5104 33 1 5.8629 1.3950 -1.2622 34 1 3.8803 -1.3436 -2.7632 35 1 5.1947 -2.0130 -3.7592 36 1 5.2240 -2.2192 -1.9912 37 1 4.6627 1.3328 -3.6246 38 1 7.2676 -1.0541 -4.3582 39 1 8.4175 -1.2157 -6.5505 40 1 7.7532 0.3386 -8.3673 41 1 3.4312 3.7234 -6.6884 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324223135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:18:49 Heat of formation + Delta-G solvation = -74.889831 kcal Electronic energy + Delta-G solvation = -21761.413399 eV Core-core repulsion = 18447.810201 eV Total energy + Delta-G solvation = -3313.603198 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.29278 -39.46090 -38.44127 -36.81193 -35.20782 -32.90387 -32.01474 -30.94191 -29.63007 -27.58322 -27.17144 -26.86973 -23.54818 -23.39709 -22.97626 -21.34577 -19.22244 -18.23850 -17.83308 -17.67860 -16.89282 -16.61540 -16.36516 -16.22867 -16.14103 -15.64654 -15.11803 -14.96083 -14.70879 -14.33376 -14.06095 -13.63209 -13.33026 -13.20094 -12.95184 -12.88983 -12.72685 -12.63669 -12.54462 -12.31216 -12.09462 -11.89789 -11.79856 -11.68193 -11.26643 -10.65116 -10.63020 -10.52646 -9.81241 -9.40378 -8.23866 -8.21308 -6.45718 1.08585 1.38094 1.41058 1.55426 1.58876 2.25800 2.60723 2.80346 2.87559 2.94562 3.88561 4.04906 4.12559 4.21228 4.23770 4.32486 4.43934 4.45803 4.49031 4.51786 4.59318 4.60852 4.69311 4.79178 4.79798 4.84695 4.93765 4.98815 5.03407 5.07321 5.19891 5.39677 5.46728 5.75411 5.99811 6.11167 6.18452 6.25415 6.33188 6.61893 6.87256 6.99145 7.26922 8.38216 8.54027 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015027 B = 0.004394 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.845897 B = 6370.815841 C = 7776.020512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.059 3.941 4 C 0.058 3.942 5 O -0.399 6.399 6 C 0.062 3.938 7 C 0.160 3.840 8 H 0.094 0.906 9 C -0.150 4.150 10 N -0.725 5.725 11 C 0.396 3.604 12 C -0.364 4.364 13 C -0.030 4.030 14 C -0.347 4.347 15 C 0.260 3.740 16 C -0.475 4.475 17 H 0.086 0.914 18 C 0.027 3.973 19 N -0.754 5.754 20 Si 0.986 3.014 21 H -0.266 1.266 22 H -0.268 1.268 23 H -0.255 1.255 24 N -0.569 5.569 25 H 0.038 0.962 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.391 0.609 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.101 0.899 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 -2.769 15.349 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.017 4.017 4 C -0.018 4.018 5 O -0.319 6.319 6 C -0.014 4.014 7 C 0.054 3.946 8 H 0.112 0.888 9 C -0.209 4.209 10 N -0.359 5.359 11 C 0.156 3.844 12 C -0.390 4.390 13 C -0.054 4.054 14 C -0.370 4.370 15 C 0.133 3.867 16 C -0.507 4.507 17 H 0.104 0.896 18 C -0.195 4.195 19 N -0.376 5.376 20 Si 0.806 3.194 21 H -0.191 1.191 22 H -0.192 1.192 23 H -0.178 1.178 24 N -0.291 5.291 25 H 0.057 0.943 26 H 0.111 0.889 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.225 0.775 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.119 0.881 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.802 -2.438 15.579 16.483 hybrid contribution 0.018 0.339 -0.690 0.769 sum -4.784 -2.099 14.889 15.779 Atomic orbital electron populations 1.22889 0.79876 1.03600 1.00642 1.87908 1.21142 1.28547 1.95558 1.22698 0.92472 0.84989 1.01549 1.22695 0.93516 0.98425 0.87159 1.87986 1.22302 1.82345 1.39227 1.22795 0.81774 1.00321 0.96557 1.21041 0.99389 0.89558 0.84590 0.88831 1.22058 1.00528 0.96903 1.01429 1.44390 1.42467 1.39931 1.09087 1.19010 0.88483 0.89755 0.87185 1.20969 1.08612 1.09191 1.00235 1.21018 0.96335 0.95762 0.92335 1.21686 1.08653 1.06038 1.00621 1.18679 0.87821 0.90573 0.89669 1.19930 1.12797 1.17471 1.00512 0.89635 1.26956 0.95955 0.97602 0.98973 1.70267 1.15307 1.28170 1.23847 0.85161 0.79039 0.77308 0.77910 1.19102 1.19224 1.17838 1.68190 1.32572 1.27699 1.00668 0.94331 0.88923 0.92275 0.89131 0.93609 0.91386 0.90324 0.89364 0.92619 0.93553 0.94246 0.89899 0.77515 0.86072 0.85267 0.88077 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -10.20 10.67 -144.35 -1.54 -11.74 16 3 C 0.06 1.22 6.32 71.98 0.45 1.68 16 4 C 0.06 1.21 6.32 71.98 0.45 1.67 16 5 O -0.40 -11.33 9.16 -144.35 -1.32 -12.65 16 6 C 0.06 1.57 5.68 71.98 0.41 1.98 16 7 C 0.16 5.03 2.66 44.99 0.12 5.15 16 8 H 0.09 2.79 6.44 -2.39 -0.02 2.78 16 9 C -0.15 -4.64 9.20 71.98 0.66 -3.97 16 10 N -0.72 -30.64 5.22 -324.45 -1.69 -32.33 16 11 C 0.40 20.12 7.63 133.42 1.02 21.14 16 12 C -0.36 -16.77 8.84 22.73 0.20 -16.57 16 13 C -0.03 -1.41 10.15 22.39 0.23 -1.18 16 14 C -0.35 -18.32 9.83 22.87 0.22 -18.10 16 15 C 0.26 15.36 6.54 40.18 0.26 15.62 16 16 C -0.47 -27.30 9.13 23.46 0.21 -27.08 16 17 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 18 C 0.03 1.42 5.49 85.29 0.47 1.89 16 19 N -0.75 -42.42 11.49 21.84 0.25 -42.17 16 20 Si 0.99 39.93 29.56 68.60 2.03 41.95 16 21 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 22 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 23 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 24 N -0.57 -33.35 7.92 -186.59 -1.48 -34.83 16 25 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.60 7.56 -2.39 -0.02 1.58 16 35 H 0.04 1.35 7.64 -2.38 -0.02 1.33 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.39 17.57 8.50 -92.71 -0.79 16.78 16 38 H 0.12 4.74 6.04 -2.91 -0.02 4.72 16 39 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 40 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 41 H 0.27 14.00 8.29 -92.71 -0.77 13.23 16 Total: -1.00 -71.30 343.99 2.44 -68.86 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: 0.23 Total: 38.98 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 5.96 Total: -16.08 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -2.92 Total: -109.33 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -2.86 Total: -24.39 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.95 kcal Total: -71.30 2.44 -68.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324223135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.028 kcal (2) G-P(sol) polarization free energy of solvation -71.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds