Wall clock time and date at job start Fri Apr 10 2020 17:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00053 * 2 1 4 4 C 1.52995 * 109.47263 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47321 * 64.99710 * 4 3 2 6 6 C 1.42902 * 114.00458 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47262 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47125 * 175.00054 * 7 6 5 9 9 C 1.52998 * 109.46933 * 55.00192 * 7 6 5 10 10 N 1.46496 * 109.47150 * 295.00186 * 7 6 5 11 11 C 1.38823 * 120.00043 * 205.00151 * 10 7 6 12 12 C 1.39800 * 119.58170 * 359.72317 * 11 10 7 13 13 C 1.38595 * 119.48735 * 179.78515 * 12 11 10 14 14 C 1.38386 * 118.68344 * 0.48787 * 13 12 11 15 15 C 1.40556 * 119.14739 * 359.73586 * 14 13 12 16 16 C 1.41312 * 119.78462 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00259 * 353.70358 * 16 15 14 18 18 C 1.40026 * 120.00341 * 173.70682 * 16 15 14 19 19 N 1.30754 * 119.99774 * 6.28733 * 18 16 15 20 20 Si 1.86800 * 120.00225 * 186.28736 * 18 16 15 21 21 H 1.48497 * 109.47151 * 94.98573 * 20 18 16 22 22 H 1.48507 * 109.46884 * 214.98321 * 20 18 16 23 23 H 1.48500 * 109.47114 * 334.98246 * 20 18 16 24 24 N 1.31950 * 119.58695 * 179.97438 * 11 10 7 25 25 H 1.08998 * 109.47371 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47184 * 300.00137 * 1 2 3 27 27 H 1.09003 * 109.47310 * 59.99570 * 1 2 3 28 28 H 1.08997 * 109.47044 * 59.99814 * 3 2 1 29 29 H 1.08993 * 109.47065 * 299.99749 * 3 2 1 30 30 H 1.09008 * 109.47065 * 304.99928 * 4 3 2 31 31 H 1.09001 * 109.47297 * 185.00086 * 4 3 2 32 32 H 1.09001 * 109.47083 * 60.00077 * 6 5 4 33 33 H 1.09004 * 109.46899 * 300.00045 * 6 5 4 34 34 H 1.09009 * 109.47340 * 299.99392 * 9 7 6 35 35 H 1.08997 * 109.46836 * 180.02562 * 9 7 6 36 36 H 1.08995 * 109.47499 * 59.99563 * 9 7 6 37 37 H 0.96997 * 120.00114 * 24.99499 * 10 7 6 38 38 H 1.08004 * 120.25698 * 0.02562 * 12 11 10 39 39 H 1.08001 * 120.65884 * 180.22329 * 13 12 11 40 40 H 1.07998 * 120.43173 * 179.76696 * 14 13 12 41 41 H 0.96996 * 120.00074 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4186 -1.3215 7 6 5.7267 -0.2350 -2.6613 8 1 6.8097 -0.2766 -2.7774 9 6 5.1229 0.5885 -3.8007 10 7 5.1791 -1.5933 -2.6971 11 6 5.7558 -2.5527 -3.5181 12 6 6.8552 -2.2117 -4.3114 13 6 7.4323 -3.1723 -5.1269 14 6 6.8914 -4.4461 -5.1380 15 6 5.7823 -4.7260 -4.3213 16 6 5.2196 -6.0223 -4.3217 17 1 5.5749 -6.7650 -5.0206 18 6 4.2012 -6.3438 -3.4160 19 7 3.6856 -5.4140 -2.6549 20 14 3.5792 -8.1010 -3.2952 21 1 4.2915 -8.8039 -2.1981 22 1 2.1213 -8.0917 -3.0126 23 1 3.8300 -8.8043 -4.5788 24 7 5.2563 -3.7738 -3.5436 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8507 0.5685 0.8428 31 1 3.9784 2.1766 0.0902 32 1 5.7354 -0.2136 -0.5069 33 1 5.8638 1.3945 -1.2592 34 1 4.0398 0.6302 -3.6847 35 1 5.3680 0.1226 -4.7551 36 1 5.5303 1.5992 -3.7740 37 1 4.4136 -1.8223 -2.1472 38 1 7.2543 -1.2084 -4.2860 39 1 8.2844 -2.9305 -5.7448 40 1 7.3163 -5.2153 -5.7657 41 1 2.9805 -5.6367 -2.0273 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324223136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:18:52 Heat of formation + Delta-G solvation = -53.154850 kcal Electronic energy + Delta-G solvation = -21874.139891 eV Core-core repulsion = 18561.479193 eV Total energy + Delta-G solvation = -3312.660698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.76613 -38.12489 -37.30792 -35.30424 -33.28475 -31.28316 -30.27217 -29.71592 -27.84744 -26.46881 -25.97221 -25.18097 -22.61392 -21.62510 -21.18489 -19.73216 -17.35388 -16.94101 -16.74631 -16.32635 -15.50932 -15.41132 -15.20913 -14.71117 -14.64901 -14.14489 -13.56764 -13.41494 -13.13301 -12.76022 -12.54800 -12.43864 -11.99959 -11.75287 -11.72630 -11.60219 -11.23035 -11.12798 -10.93088 -10.89260 -10.63569 -10.44867 -10.29978 -9.81979 -9.74643 -9.53912 -9.38047 -8.78208 -7.80825 -7.38012 -6.36747 -6.22411 -4.37210 2.95896 3.17475 3.21148 3.33978 3.38765 3.66634 3.73151 4.06504 4.32072 4.88292 4.93681 5.05617 5.09294 5.23000 5.26029 5.32037 5.33628 5.42476 5.47812 5.62539 5.66356 5.74684 5.93756 6.07124 6.18493 6.25151 6.36185 6.63846 6.78891 6.97223 6.99510 7.05175 7.08969 7.27281 7.36587 7.71312 7.92319 8.03204 8.29058 8.50098 8.85598 8.91879 9.25065 10.36450 10.51998 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.005067 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.820585 B = 5524.662025 C = 7374.084713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.064 3.936 4 C 0.063 3.937 5 O -0.369 6.369 6 C 0.056 3.944 7 C 0.167 3.833 8 H 0.085 0.915 9 C -0.161 4.161 10 N -0.728 5.728 11 C 0.414 3.586 12 C -0.370 4.370 13 C -0.032 4.032 14 C -0.320 4.320 15 C 0.293 3.707 16 C -0.437 4.437 17 H 0.082 0.918 18 C 0.071 3.929 19 N -0.713 5.713 20 Si 0.903 3.097 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.262 1.262 24 N -0.531 5.531 25 H 0.087 0.913 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.401 0.599 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 13.489 6.600 15.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C -0.013 4.013 4 C -0.014 4.014 5 O -0.288 6.288 6 C -0.021 4.021 7 C 0.060 3.940 8 H 0.103 0.897 9 C -0.220 4.220 10 N -0.365 5.365 11 C 0.174 3.826 12 C -0.396 4.396 13 C -0.057 4.057 14 C -0.343 4.343 15 C 0.166 3.834 16 C -0.469 4.469 17 H 0.100 0.900 18 C -0.154 4.154 19 N -0.334 5.334 20 Si 0.728 3.272 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.186 1.186 24 N -0.253 5.253 25 H 0.106 0.894 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.237 0.763 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.776 13.231 7.078 15.473 hybrid contribution 0.162 -0.214 -0.025 0.269 sum -3.614 13.018 7.053 15.240 Atomic orbital electron populations 1.22737 0.81232 1.03035 0.99451 1.88040 1.19427 1.26857 1.95260 1.22530 0.92598 0.85764 1.00429 1.22471 0.93294 0.97210 0.88422 1.88018 1.21880 1.81891 1.37047 1.22864 0.81843 0.99054 0.98387 1.20700 0.98075 0.82900 0.92358 0.89715 1.22188 1.02116 0.98400 0.99334 1.44186 1.36428 1.07117 1.48724 1.18563 0.88052 0.88710 0.87300 1.20618 1.06651 0.99664 1.12642 1.20580 0.96336 0.93319 0.95448 1.21515 1.04972 0.96884 1.10892 1.18201 0.87543 0.91628 0.85997 1.19565 1.15629 0.95882 1.15853 0.89989 1.26046 0.95839 0.98469 0.95029 1.70167 1.16781 1.32740 1.13728 0.86394 0.78298 0.82972 0.79557 1.19653 1.20293 1.18628 1.68231 1.32085 0.98132 1.26841 0.89423 0.94523 0.94116 0.92273 0.92559 0.92552 0.92183 0.92728 0.92732 0.91846 0.92136 0.93219 0.76305 0.89167 0.89115 0.88870 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.38 10.67 -40.08 -0.43 -5.81 16 3 C 0.06 0.70 6.32 37.16 0.23 0.93 16 4 C 0.06 0.71 6.32 37.16 0.23 0.95 16 5 O -0.37 -5.47 9.16 -40.08 -0.37 -5.84 16 6 C 0.06 0.76 5.68 37.16 0.21 0.97 16 7 C 0.17 2.76 2.66 -67.93 -0.18 2.58 16 8 H 0.09 1.37 6.45 -51.93 -0.33 1.04 16 9 C -0.16 -2.53 9.19 37.16 0.34 -2.18 16 10 N -0.73 -15.63 5.22 -53.91 -0.28 -15.92 16 11 C 0.41 10.53 7.63 -155.33 -1.18 9.34 16 12 C -0.37 -8.76 8.83 -38.87 -0.34 -9.10 16 13 C -0.03 -0.78 10.15 -39.39 -0.40 -1.18 16 14 C -0.32 -8.38 9.83 -38.65 -0.38 -8.76 16 15 C 0.29 8.47 6.54 -85.00 -0.56 7.92 16 16 C -0.44 -12.28 9.13 -37.74 -0.34 -12.62 16 17 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 18 C 0.07 1.90 5.49 -17.34 -0.10 1.80 16 19 N -0.71 -19.78 11.49 55.55 0.64 -19.14 16 20 Si 0.90 19.40 29.56 -169.99 -5.03 14.38 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 24 N -0.53 -15.30 7.92 -10.33 -0.08 -15.39 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 1.06 7.56 -51.92 -0.39 0.67 16 35 H 0.06 1.05 7.62 -51.93 -0.40 0.66 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.40 9.15 8.50 -40.82 -0.35 8.81 16 38 H 0.09 1.88 6.03 -52.48 -0.32 1.57 16 39 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 41 H 0.27 6.83 8.29 -40.82 -0.34 6.49 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -32.36 343.95 -8.12 -40.48 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.41 Total: 9.94 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.35 Total: -7.89 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.27 Total: -50.44 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.79 Total: -11.64 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.36 -8.12 -40.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324223136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.676 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds