Wall clock time and date at job start Fri Apr 10 2020 17:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 N 1.46498 * 109.47272 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00043 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00130 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99941 * 179.97438 * 7 6 5 10 10 H 1.08996 * 109.47653 * 300.00295 * 9 7 6 11 11 C 1.53005 * 109.46801 * 60.00064 * 9 7 6 12 12 C 1.50702 * 109.47041 * 179.97438 * 9 7 6 13 13 C 1.34508 * 125.78480 * 120.00473 * 12 9 7 14 14 C 1.41389 * 106.83984 * 180.02562 * 13 12 9 15 15 C 1.34516 * 106.83751 * 359.97438 * 14 13 12 16 16 O 1.34303 * 125.78873 * 299.69386 * 12 9 7 17 17 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 18 18 C 1.36931 * 119.99788 * 84.99932 * 17 2 1 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 2 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 2 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48508 * 109.46872 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99997 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00044 * 22 20 18 26 26 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 27 27 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 29 29 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 30 30 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 31 31 H 1.09000 * 109.46766 * 299.99484 * 5 4 2 32 32 H 1.08992 * 109.47398 * 59.99391 * 5 4 2 33 33 H 0.97004 * 119.99849 * 359.97438 * 6 5 4 34 34 H 1.09000 * 109.47222 * 59.99980 * 11 9 7 35 35 H 1.08998 * 109.46997 * 180.02562 * 11 9 7 36 36 H 1.09002 * 109.47464 * 299.99792 * 11 9 7 37 37 H 1.08002 * 126.58537 * 359.96360 * 13 12 9 38 38 H 1.07994 * 126.57929 * 180.02562 * 14 13 12 39 39 H 1.08001 * 125.78599 * 180.02562 * 15 14 13 40 40 H 0.97000 * 119.99792 * 264.99726 * 17 2 1 41 41 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0533 -1.3044 2.5095 7 6 5.3742 -1.3406 2.7746 8 8 6.1585 -0.8015 2.0230 9 6 5.8766 -2.0511 4.0051 10 1 5.4424 -1.5915 4.8929 11 6 5.4712 -3.5252 3.9439 12 6 7.3786 -1.9458 4.0678 13 6 8.0863 -1.3756 5.0593 14 6 9.4512 -1.4984 4.7114 15 6 9.4958 -2.1369 3.5283 16 8 8.2377 -2.4107 3.1461 17 7 2.0183 -0.6907 -1.1962 18 6 2.1491 -0.0075 -2.3757 19 1 1.8926 1.0405 -2.4242 20 6 2.6172 -0.6605 -3.5077 21 7 2.9303 -1.9375 -3.4485 22 14 2.8029 0.2732 -5.1149 23 1 2.3867 1.6851 -4.9180 24 1 4.2219 0.2312 -5.5507 25 1 1.9472 -0.3544 -6.1537 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -0.2618 2.1370 30 1 1.7517 -1.7715 1.2056 31 1 3.9995 -1.0728 0.4260 32 1 3.8532 0.4370 1.3573 33 1 3.4259 -1.7359 3.1105 34 1 5.9055 -3.9850 3.0561 35 1 5.8342 -4.0390 4.8340 36 1 4.3848 -3.6018 3.8983 37 1 7.6884 -0.9118 5.9499 38 1 10.2959 -1.1477 5.2857 39 1 10.3916 -2.3907 2.9810 40 1 2.2490 -1.6318 -1.1526 41 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328399426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:10 Heat of formation + Delta-G solvation = -23.211196 kcal Electronic energy + Delta-G solvation = -21581.794721 eV Core-core repulsion = 18270.432477 eV Total energy + Delta-G solvation = -3311.362244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.60878 -39.59448 -36.60408 -34.45920 -34.18707 -32.88515 -32.18326 -29.38542 -28.63515 -27.96116 -24.88876 -23.77938 -22.62248 -21.80077 -21.03527 -20.17531 -19.48989 -17.65610 -17.20499 -16.86628 -15.85456 -15.76982 -15.38725 -14.90353 -14.39811 -14.17994 -13.81606 -13.47841 -13.42293 -13.01197 -12.84845 -12.69789 -12.50776 -12.42231 -12.03270 -11.82886 -11.75081 -11.52776 -11.05307 -10.90649 -10.73257 -10.61397 -10.26368 -9.97285 -9.93671 -9.64202 -9.59179 -8.90946 -8.79515 -8.50906 -6.92859 -5.72873 -3.01456 1.69929 2.54702 2.73514 2.95827 3.35320 3.46845 3.52444 3.54630 4.35748 4.63051 4.66442 4.77217 4.88813 5.01161 5.09553 5.29869 5.39010 5.41034 5.48886 5.58401 5.69078 5.74611 5.79730 5.88235 5.89943 6.05267 6.08054 6.18880 6.35653 6.40659 6.43809 6.49337 6.68570 6.72422 6.87698 7.07239 7.13717 7.62732 7.74753 8.36049 8.45463 9.56998 10.13586 10.48108 11.49865 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019237 B = 0.003602 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.168802 B = 7770.540080 C = 8710.224079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.726 5.726 7 C 0.510 3.490 8 O -0.523 6.523 9 C -0.031 4.031 10 H 0.123 0.877 11 C -0.145 4.145 12 C 0.016 3.984 13 C -0.211 4.211 14 C -0.219 4.219 15 C -0.037 4.037 16 O -0.158 6.158 17 N -0.724 5.724 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.396 0.604 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.201 0.799 40 H 0.383 0.617 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.460 -2.167 20.939 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.001 4.001 6 N -0.378 5.378 7 C 0.294 3.706 8 O -0.398 6.398 9 C -0.052 4.052 10 H 0.141 0.859 11 C -0.203 4.203 12 C -0.035 4.035 13 C -0.230 4.230 14 C -0.238 4.238 15 C -0.105 4.105 16 O -0.052 6.052 17 N -0.366 5.366 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.220 1.220 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.230 0.770 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.217 0.783 40 H 0.217 0.783 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.955 -1.780 19.955 20.900 hybrid contribution 0.028 0.104 -0.494 0.506 sum 5.983 -1.676 19.461 20.429 Atomic orbital electron populations 1.22424 0.99139 1.00820 0.99959 1.20153 0.91871 0.95578 0.86037 0.93321 1.22058 0.93863 1.01798 0.99335 1.21469 0.94396 0.97142 0.87078 1.46066 1.06873 1.57170 1.27707 1.20300 0.82732 0.80761 0.86808 1.90778 1.55148 1.44877 1.48958 1.19920 0.87355 0.98941 0.98987 0.85944 1.21817 1.02249 0.92442 1.03786 1.21556 0.91174 1.01490 0.89265 1.21499 0.93333 1.06692 1.01510 1.21751 0.97417 1.06242 0.98403 1.24043 0.85752 1.03261 0.97425 1.84060 1.15628 1.62262 1.43295 1.42460 1.78094 1.10660 1.05362 1.19266 1.36312 0.93897 0.87388 0.91169 1.24724 1.02116 0.95974 0.98076 1.69664 1.50888 1.08704 1.28804 0.86152 0.77331 0.78824 0.84107 1.20576 1.21887 1.21968 0.92721 0.93526 0.94584 0.91927 0.91583 0.89699 0.91842 0.77050 0.91199 0.91008 0.90950 0.83626 0.83598 0.78256 0.78294 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.49 37.16 0.35 -2.48 16 2 C 0.17 3.32 2.89 -67.93 -0.20 3.13 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.98 4.87 -26.73 -0.13 -2.11 16 5 C 0.12 2.03 5.56 -4.04 -0.02 2.01 16 6 N -0.73 -9.57 5.45 -60.30 -0.33 -9.90 16 7 C 0.51 7.67 7.15 -10.98 -0.08 7.59 16 8 O -0.52 -10.71 15.81 -0.83 -0.01 -10.72 16 9 C -0.03 -0.33 3.13 -92.92 -0.29 -0.62 16 10 H 0.12 0.91 8.10 -51.93 -0.42 0.49 16 11 C -0.15 -1.28 9.07 37.16 0.34 -0.94 16 12 C 0.02 0.22 5.19 -35.63 -0.18 0.03 16 13 C -0.21 -2.43 10.78 -39.70 -0.43 -2.86 16 14 C -0.22 -2.40 10.91 -39.70 -0.43 -2.83 16 15 C -0.04 -0.43 12.09 29.42 0.36 -0.07 16 16 O -0.16 -2.34 10.36 -0.68 -0.01 -2.34 16 17 N -0.72 -17.81 4.57 -53.42 -0.24 -18.05 16 18 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 22 Si 0.90 22.82 29.55 -169.99 -5.02 17.80 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.79 7.75 -51.93 -0.40 1.39 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.40 3.68 7.89 -40.82 -0.32 3.36 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.49 7.56 -51.93 -0.39 0.10 16 37 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.20 1.58 8.06 -52.49 -0.42 1.15 16 40 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 41 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -35.28 349.32 -7.07 -42.34 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.47 Total: 9.73 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -0.96 Total: -6.38 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.15 Total: -55.70 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.02 Total: -13.06 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.28 -7.07 -42.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328399426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.131 kcal (2) G-P(sol) polarization free energy of solvation -35.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds