Wall clock time and date at job start Fri Apr 10 2020 17:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 N 1.46498 * 109.47272 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00043 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00130 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99941 * 179.97438 * 7 6 5 10 10 H 1.08996 * 109.47653 * 300.00295 * 9 7 6 11 11 C 1.53005 * 109.46801 * 60.00064 * 9 7 6 12 12 C 1.50702 * 109.47041 * 179.97438 * 9 7 6 13 13 C 1.34508 * 125.78480 * 120.00473 * 12 9 7 14 14 C 1.41389 * 106.83984 * 180.02562 * 13 12 9 15 15 C 1.34516 * 106.83751 * 359.97438 * 14 13 12 16 16 O 1.34303 * 125.78873 * 299.69386 * 12 9 7 17 17 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 18 18 C 1.36931 * 119.99788 * 84.99932 * 17 2 1 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 2 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 2 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48508 * 109.46872 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99997 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00044 * 22 20 18 26 26 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 27 27 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 29 29 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 30 30 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 31 31 H 1.09000 * 109.46766 * 299.99484 * 5 4 2 32 32 H 1.08992 * 109.47398 * 59.99391 * 5 4 2 33 33 H 0.97004 * 119.99849 * 359.97438 * 6 5 4 34 34 H 1.09000 * 109.47222 * 59.99980 * 11 9 7 35 35 H 1.08998 * 109.46997 * 180.02562 * 11 9 7 36 36 H 1.09002 * 109.47464 * 299.99792 * 11 9 7 37 37 H 1.08002 * 126.58537 * 359.96360 * 13 12 9 38 38 H 1.07994 * 126.57929 * 180.02562 * 14 13 12 39 39 H 1.08001 * 125.78599 * 180.02562 * 15 14 13 40 40 H 0.97000 * 119.99792 * 264.99726 * 17 2 1 41 41 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0533 -1.3044 2.5095 7 6 5.3742 -1.3406 2.7746 8 8 6.1585 -0.8015 2.0230 9 6 5.8766 -2.0511 4.0051 10 1 5.4424 -1.5915 4.8929 11 6 5.4712 -3.5252 3.9439 12 6 7.3786 -1.9458 4.0678 13 6 8.0863 -1.3756 5.0593 14 6 9.4512 -1.4984 4.7114 15 6 9.4958 -2.1369 3.5283 16 8 8.2377 -2.4107 3.1461 17 7 2.0183 -0.6907 -1.1962 18 6 2.1491 -0.0075 -2.3757 19 1 1.8926 1.0405 -2.4242 20 6 2.6172 -0.6605 -3.5077 21 7 2.9303 -1.9375 -3.4485 22 14 2.8029 0.2732 -5.1149 23 1 2.3867 1.6851 -4.9180 24 1 4.2219 0.2312 -5.5507 25 1 1.9472 -0.3544 -6.1537 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -0.2618 2.1370 30 1 1.7517 -1.7715 1.2056 31 1 3.9995 -1.0728 0.4260 32 1 3.8532 0.4370 1.3573 33 1 3.4259 -1.7359 3.1105 34 1 5.9055 -3.9850 3.0561 35 1 5.8342 -4.0390 4.8340 36 1 4.3848 -3.6018 3.8983 37 1 7.6884 -0.9118 5.9499 38 1 10.2959 -1.1477 5.2857 39 1 10.3916 -2.3907 2.9810 40 1 2.2490 -1.6318 -1.1526 41 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328399426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:08 Heat of formation + Delta-G solvation = -48.164329 kcal Electronic energy + Delta-G solvation = -21582.876770 eV Core-core repulsion = 18270.432477 eV Total energy + Delta-G solvation = -3312.444293 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.50621 -40.80825 -38.16013 -35.87364 -35.24345 -34.08562 -33.73407 -31.05374 -29.82168 -29.17138 -26.04971 -25.54951 -23.94638 -22.68669 -22.15602 -21.50003 -20.70433 -19.28873 -18.57816 -17.91404 -17.01919 -16.88849 -16.74997 -16.42701 -15.72396 -15.47517 -15.26341 -15.08548 -14.60303 -14.17951 -14.11871 -13.67722 -13.55623 -13.53020 -13.32707 -13.23537 -12.86392 -12.64674 -12.62703 -12.54010 -12.25360 -12.19804 -12.09813 -11.62865 -11.59541 -10.98586 -10.88636 -10.76876 -10.10978 -9.38858 -8.97961 -7.93533 -5.19992 0.79504 1.44612 1.46230 1.55224 1.57904 1.69602 2.14120 2.26245 2.56351 3.41084 3.53401 3.74142 3.92600 3.98442 4.02754 4.12327 4.21627 4.23837 4.32214 4.39625 4.67237 4.73845 4.77558 4.79468 4.89450 4.94809 5.01895 5.03807 5.11789 5.15348 5.22339 5.27928 5.41028 5.45155 5.54062 5.62942 5.65170 6.26600 6.29903 6.55725 7.26233 7.35767 8.14341 8.35055 9.30294 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019237 B = 0.003602 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.168802 B = 7770.540080 C = 8710.224079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.041 0.959 4 C -0.114 4.114 5 C 0.132 3.868 6 N -0.707 5.707 7 C 0.504 3.496 8 O -0.587 6.587 9 C -0.021 4.021 10 H 0.166 0.834 11 C -0.141 4.141 12 C -0.016 4.016 13 C -0.211 4.211 14 C -0.224 4.224 15 C -0.056 4.056 16 O -0.194 6.194 17 N -0.736 5.736 18 C -0.232 4.232 19 H 0.074 0.926 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.965 3.035 23 H -0.265 1.265 24 H -0.299 1.299 25 H -0.292 1.292 26 H 0.031 0.969 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.049 0.951 33 H 0.419 0.581 34 H 0.039 0.961 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.173 0.827 38 H 0.172 0.828 39 H 0.225 0.775 40 H 0.372 0.628 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 -1.566 23.823 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.059 0.941 4 C -0.153 4.153 5 C 0.008 3.992 6 N -0.360 5.360 7 C 0.291 3.709 8 O -0.466 6.466 9 C -0.042 4.042 10 H 0.183 0.817 11 C -0.199 4.199 12 C -0.066 4.066 13 C -0.230 4.230 14 C -0.243 4.243 15 C -0.123 4.123 16 O -0.091 6.091 17 N -0.377 5.377 18 C -0.364 4.364 19 H 0.092 0.908 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.795 3.205 23 H -0.190 1.190 24 H -0.227 1.227 25 H -0.219 1.219 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.257 0.743 34 H 0.058 0.942 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.191 0.809 38 H 0.190 0.810 39 H 0.242 0.758 40 H 0.203 0.797 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.767 -1.160 22.914 23.434 hybrid contribution 0.400 -0.030 -1.291 1.352 sum 5.166 -1.191 21.624 22.264 Atomic orbital electron populations 1.22256 0.96995 1.01106 1.00894 1.20478 0.93242 0.95138 0.85720 0.94136 1.21915 0.92186 1.02213 0.98959 1.21093 0.95518 0.95998 0.86567 1.45820 1.07052 1.56401 1.26745 1.21191 0.82496 0.79790 0.87471 1.90749 1.56764 1.47711 1.51402 1.20069 0.86406 0.99764 0.97917 0.81671 1.21842 1.03649 0.90928 1.03449 1.22120 0.92180 1.02661 0.89686 1.21937 0.93490 1.05622 1.01926 1.22173 0.98253 1.05611 0.98257 1.24743 0.85716 1.03525 0.98324 1.84036 1.17000 1.63294 1.44730 1.42672 1.78392 1.10259 1.06352 1.19640 1.34127 0.94104 0.88535 0.90830 1.25486 1.03309 0.96892 1.01371 1.69814 1.52923 1.10215 1.29193 0.85176 0.76553 0.78379 0.80351 1.18981 1.22708 1.21949 0.94964 0.93540 0.90449 0.87309 0.90779 0.95025 0.93289 0.74251 0.94169 0.88767 0.88526 0.80908 0.81020 0.75834 0.79660 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.49 71.98 0.68 -4.24 16 2 C 0.16 6.03 2.89 44.99 0.13 6.16 16 3 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 4 C -0.11 -3.18 4.87 30.60 0.15 -3.03 16 5 C 0.13 4.41 5.56 86.38 0.48 4.89 16 6 N -0.71 -17.69 5.45 -463.07 -2.52 -20.21 16 7 C 0.50 15.04 7.15 87.66 0.63 15.67 16 8 O -0.59 -25.11 15.81 3.09 0.05 -25.06 16 9 C -0.02 -0.41 3.13 -12.28 -0.04 -0.45 16 10 H 0.17 1.79 8.10 -2.39 -0.02 1.77 16 11 C -0.14 -2.21 9.07 71.98 0.65 -1.56 16 12 C -0.02 -0.41 5.19 24.83 0.13 -0.28 16 13 C -0.21 -4.47 10.78 22.19 0.24 -4.23 16 14 C -0.22 -4.61 10.91 22.19 0.24 -4.36 16 15 C -0.06 -1.30 12.09 66.97 0.81 -0.49 16 16 O -0.19 -5.93 10.36 3.60 0.04 -5.89 16 17 N -0.74 -36.75 4.57 -322.93 -1.48 -38.23 16 18 C -0.23 -13.08 9.93 84.04 0.83 -12.24 16 19 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 21 N -0.97 -61.17 13.06 21.65 0.28 -60.88 16 22 Si 0.97 47.87 29.55 68.60 2.03 49.90 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 25 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 26 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.03 1.40 7.75 -2.39 -0.02 1.38 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.42 6.41 7.89 -92.71 -0.73 5.68 16 34 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 1.00 7.56 -2.39 -0.02 0.98 16 37 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.23 3.51 8.06 -2.91 -0.02 3.49 16 40 H 0.37 20.07 7.80 -92.71 -0.72 19.35 16 41 H 0.25 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -81.99 349.32 3.37 -78.62 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -0.43 Total: 30.11 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 5.40 Total: -8.35 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -3.72 Total: -119.33 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: 0.09 Total: -30.95 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -81.99 3.37 -78.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328399426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.458 kcal (2) G-P(sol) polarization free energy of solvation -81.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds