Wall clock time and date at job start Fri Apr 10 2020 17:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46839 * 2 1 4 4 C 1.50700 * 109.46981 * 239.99679 * 2 1 3 5 5 H 1.07999 * 119.99999 * 239.99979 * 4 2 1 6 6 C 1.37878 * 119.99623 * 60.00601 * 4 2 1 7 7 N 1.31513 * 120.00263 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99643 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47115 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47010 * 119.99844 * 8 6 4 11 11 H 1.48499 * 109.46860 * 239.99560 * 8 6 4 12 12 C 1.50701 * 109.46740 * 119.99905 * 2 1 3 13 13 O 1.21277 * 119.99959 * 102.36086 * 12 2 1 14 14 N 1.34773 * 120.00036 * 282.35225 * 12 2 1 15 15 C 1.46993 * 120.74228 * 174.86754 * 14 12 2 16 16 C 1.53163 * 108.41739 * 125.19698 * 15 14 12 17 17 C 1.52467 * 109.82307 * 54.41014 * 16 15 14 18 18 H 1.09007 * 108.15141 * 182.69807 * 17 16 15 19 19 N 1.45440 * 111.16654 * 64.10789 * 17 16 15 20 20 C 1.33550 * 123.60648 * 215.47015 * 19 17 16 21 21 O 1.21278 * 118.25041 * 182.64324 * 20 19 17 22 22 C 1.50152 * 123.49505 * 2.64034 * 20 19 17 23 23 C 1.53065 * 110.18866 * 342.98930 * 22 20 19 24 24 C 1.52752 * 110.88485 * 300.44696 * 17 16 15 25 25 H 1.09000 * 110.08252 * 297.32340 * 24 17 16 26 26 C 1.46798 * 120.74166 * 354.84861 * 14 12 2 27 27 H 1.08998 * 109.47332 * 293.22636 * 1 2 3 28 28 H 1.09001 * 109.47465 * 53.22746 * 1 2 3 29 29 H 1.09004 * 109.47384 * 173.22622 * 1 2 3 30 30 H 0.97002 * 119.99537 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.67518 * 5.47087 * 15 14 12 32 32 H 1.08998 * 109.71136 * 244.94805 * 15 14 12 33 33 H 1.08996 * 109.41026 * 294.30663 * 16 15 14 34 34 H 1.08993 * 109.41507 * 174.51764 * 16 15 14 35 35 H 0.96998 * 118.19199 * 35.18161 * 19 17 16 36 36 H 1.08998 * 109.35413 * 222.76588 * 22 20 19 37 37 H 1.09002 * 109.22981 * 103.12913 * 22 20 19 38 38 H 1.09002 * 109.72101 * 288.80700 * 23 22 20 39 39 H 1.09002 * 109.71633 * 168.16162 * 23 22 20 40 40 H 1.08998 * 109.52014 * 354.24102 * 26 14 12 41 41 H 1.08998 * 109.52091 * 114.43204 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1482 -2.2857 -3.6037 10 1 1.1678 -1.5866 -4.8164 11 1 3.1472 -0.1858 -4.8160 12 6 2.0323 -0.7104 1.2305 13 8 2.4463 -1.8473 1.1478 14 7 2.0214 -0.0823 2.4229 15 6 2.4014 -0.7949 3.6511 16 6 3.5205 -0.0086 4.3403 17 6 3.0785 1.4337 4.5615 18 1 3.9100 1.9791 5.0081 19 7 1.9488 1.5025 5.4750 20 6 0.9590 2.3917 5.3609 21 8 0.0889 2.3938 6.2058 22 6 0.8660 3.3892 4.2424 23 6 2.2193 3.5226 3.5398 24 6 2.7425 2.1101 3.2338 25 1 3.6296 2.1559 2.6021 26 6 1.6303 1.3290 2.5240 27 1 -0.3634 0.4053 0.9443 28 1 -0.3634 0.6152 -0.8232 29 1 -0.3634 -1.0205 -0.1212 30 1 0.7083 1.1609 -3.4844 31 1 2.7560 -1.7947 3.4004 32 1 1.5404 -0.8669 4.3156 33 1 4.4119 -0.0221 3.7132 34 1 3.7481 -0.4692 5.3015 35 1 1.9102 0.8648 6.2049 36 1 0.5714 4.3579 4.6459 37 1 0.1176 3.0543 3.5241 38 1 2.9222 4.0422 4.1910 39 1 2.0978 4.0792 2.6105 40 1 1.4791 1.7375 1.5249 41 1 0.7060 1.4107 3.0958 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328402238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:23 Heat of formation + Delta-G solvation = -79.185965 kcal Electronic energy + Delta-G solvation = -23379.647678 eV Core-core repulsion = 20065.858186 eV Total energy + Delta-G solvation = -3313.789492 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.14526 -39.07891 -37.43069 -34.48194 -34.24152 -33.65906 -31.37756 -30.19707 -29.34284 -25.46158 -25.19009 -24.95232 -22.90250 -22.16367 -21.02132 -18.98417 -18.24961 -17.03646 -16.55742 -16.09822 -16.02231 -15.80730 -15.15199 -14.74843 -14.52787 -14.12812 -14.01874 -13.72433 -13.47765 -13.17798 -12.80847 -12.54026 -12.27480 -12.09610 -11.78024 -11.34667 -11.28875 -11.02581 -10.96427 -10.91487 -10.73794 -10.71958 -10.61953 -10.28735 -10.00770 -9.79862 -9.18924 -8.98007 -8.62813 -8.35286 -8.11165 -6.07462 -4.09825 2.57502 3.17511 3.29582 3.37528 3.44308 3.57173 3.62325 4.35678 4.39803 4.43837 4.52320 4.61988 4.95410 4.99157 5.11294 5.19428 5.26445 5.28424 5.38953 5.55102 5.62175 5.69415 5.73307 5.80282 5.89819 5.95699 5.98652 6.12443 6.23108 6.62139 6.68641 6.78708 6.90774 7.03652 7.24346 7.40748 7.71065 7.93245 8.03934 8.13359 8.33499 8.97538 9.15711 9.55514 11.00614 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026506 B = 0.005002 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.119997 B = 5596.561876 C = 6041.448193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.031 3.969 3 H 0.049 0.951 4 C -0.501 4.501 5 H 0.072 0.928 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.524 3.476 13 O -0.544 6.544 14 N -0.625 5.625 15 C 0.110 3.890 16 C -0.142 4.142 17 C 0.147 3.853 18 H 0.069 0.931 19 N -0.711 5.711 20 C 0.523 3.477 21 O -0.563 6.563 22 C -0.141 4.141 23 C -0.117 4.117 24 C -0.117 4.117 25 H 0.102 0.898 26 C 0.109 3.891 27 H 0.011 0.989 28 H 0.090 0.910 29 H 0.035 0.965 30 H 0.260 0.740 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.397 0.603 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.945 6.454 13.553 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.011 3.989 3 H 0.067 0.933 4 C -0.539 4.539 5 H 0.090 0.910 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.316 3.684 13 O -0.420 6.420 14 N -0.361 5.361 15 C -0.013 4.013 16 C -0.181 4.181 17 C 0.042 3.958 18 H 0.087 0.913 19 N -0.363 5.363 20 C 0.310 3.690 21 O -0.443 6.443 22 C -0.181 4.181 23 C -0.155 4.155 24 C -0.136 4.136 25 H 0.120 0.880 26 C -0.014 4.014 27 H 0.030 0.970 28 H 0.109 0.891 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.233 0.767 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.122 0.878 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.652 6.087 13.584 15.327 hybrid contribution 0.347 -0.631 -0.524 0.891 sum 3.999 5.456 13.060 14.708 Atomic orbital electron populations 1.21708 0.96174 1.01169 0.99588 1.18887 0.94212 0.96559 0.89284 0.93338 1.21147 1.31140 1.12592 0.89031 0.91029 1.24932 0.95062 0.95035 0.99076 1.69886 1.37055 1.23090 1.23481 0.86417 0.78667 0.79784 0.82518 1.19597 1.21000 1.21046 1.22052 0.75517 0.86762 0.84100 1.90523 1.46517 1.19581 1.85376 1.48296 1.69591 1.11160 1.07058 1.21381 0.96303 0.97249 0.86398 1.22118 1.00042 0.94373 1.01596 1.20657 0.88072 0.96942 0.90149 0.91321 1.45540 1.23930 1.35482 1.31318 1.20242 0.80497 0.81589 0.86655 1.90749 1.38777 1.72514 1.42222 1.21743 1.00152 0.99351 0.96845 1.21747 0.95765 0.96330 1.01645 1.21993 1.01007 0.94855 0.95783 0.88027 1.21899 0.95587 0.81308 1.02652 0.96979 0.89130 0.94628 0.92990 0.89016 0.92480 0.89596 0.90565 0.76731 0.88170 0.87500 0.90908 0.89581 0.87793 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.66 37.16 0.32 -2.63 16 2 C 0.03 0.76 1.79 -92.92 -0.17 0.59 16 3 H 0.05 1.16 6.47 -51.93 -0.34 0.83 16 4 C -0.50 -13.87 8.35 -34.44 -0.29 -14.15 16 5 H 0.07 2.11 6.89 -52.49 -0.36 1.75 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -24.45 11.40 55.43 0.63 -23.82 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.52 11.65 6.86 -10.99 -0.08 11.57 16 13 O -0.54 -13.91 15.07 5.56 0.08 -13.83 16 14 N -0.63 -10.57 2.96 -172.76 -0.51 -11.08 16 15 C 0.11 1.54 6.29 -3.69 -0.02 1.52 16 16 C -0.14 -1.45 5.71 -26.92 -0.15 -1.60 16 17 C 0.15 1.38 2.85 -68.90 -0.20 1.19 16 18 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 19 N -0.71 -7.35 4.73 -55.36 -0.26 -7.61 16 20 C 0.52 6.49 6.87 -11.80 -0.08 6.41 16 21 O -0.56 -9.25 17.79 5.56 0.10 -9.15 16 22 C -0.14 -1.39 5.36 -28.11 -0.15 -1.54 16 23 C -0.12 -0.99 5.68 -26.33 -0.15 -1.14 16 24 C -0.12 -1.22 2.91 -90.21 -0.26 -1.48 16 25 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 26 C 0.11 1.51 4.30 -3.71 -0.02 1.50 16 27 H 0.01 0.23 7.32 -51.93 -0.38 -0.15 16 28 H 0.09 2.24 6.28 -51.93 -0.33 1.91 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.09 1.46 7.01 -51.93 -0.36 1.09 16 32 H 0.06 0.76 7.98 -51.93 -0.41 0.35 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.40 3.83 8.68 -40.82 -0.35 3.47 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.11 1.08 6.67 -51.93 -0.35 0.73 16 38 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.10 1.60 5.35 -51.93 -0.28 1.32 16 41 H 0.06 0.83 5.17 -51.93 -0.27 0.56 16 LS Contribution 314.96 15.07 4.75 4.75 Total: -1.00 -32.79 314.96 -7.51 -40.30 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.94 Total: 2.32 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -1.33 Total: 1.76 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.14 Total: -42.51 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.18 Total: -22.98 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.79 -7.51 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328402238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.882 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds