Wall clock time and date at job start Fri Apr 10 2020 17:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47426 * 301.96811 * 3 2 1 5 5 C 1.42892 * 114.00170 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47303 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47015 * 180.02562 * 6 5 4 8 8 O 1.21273 * 120.00242 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99719 * 180.02562 * 7 6 5 10 10 C 1.47431 * 125.64867 * 0.04306 * 9 7 6 11 11 C 1.55121 * 104.94044 * 203.96847 * 10 9 7 12 12 C 1.55159 * 101.49016 * 323.22082 * 11 10 9 13 13 H 1.08999 * 110.71637 * 276.83260 * 12 11 10 14 14 N 1.46494 * 110.71905 * 153.73200 * 12 11 10 15 15 C 1.36945 * 119.99612 * 88.84902 * 14 12 11 16 16 H 1.07999 * 120.00077 * 359.97438 * 15 14 12 17 17 C 1.38812 * 119.99637 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00227 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99854 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47118 * 90.00067 * 19 17 15 21 21 H 1.48499 * 109.47293 * 210.00071 * 19 17 15 22 22 H 1.48504 * 109.47104 * 330.00316 * 19 17 15 23 23 C 1.47026 * 125.64766 * 180.02562 * 9 7 6 24 24 H 1.08991 * 110.01201 * 59.48910 * 23 9 7 25 25 C 1.52994 * 109.87943 * 298.38925 * 23 9 7 26 26 H 4.38451 * 5.44357 * 179.97438 * 4 1 2 27 27 H 1.09003 * 109.46952 * 181.97173 * 3 2 1 28 28 H 1.08997 * 109.47142 * 61.97422 * 3 2 1 29 29 H 1.09006 * 109.47086 * 60.00561 * 5 4 3 30 30 H 1.09003 * 109.47470 * 300.00641 * 5 4 3 31 31 H 1.09006 * 109.46547 * 60.00285 * 6 5 4 32 32 H 1.08994 * 109.47458 * 300.00544 * 6 5 4 33 33 H 1.09004 * 110.36572 * 322.93138 * 10 9 7 34 34 H 1.08994 * 110.36831 * 85.25475 * 10 9 7 35 35 H 1.09004 * 111.16490 * 205.12968 * 11 10 9 36 36 H 1.09009 * 110.93785 * 81.21660 * 11 10 9 37 37 H 0.96995 * 120.00290 * 269.11793 * 14 12 11 38 38 H 0.97005 * 120.00046 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.47709 * 302.19412 * 25 23 9 40 40 H 1.09004 * 109.47299 * 62.19643 * 25 23 9 41 41 H 1.09003 * 109.46915 * 182.19019 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1227 -0.7124 1.1430 5 6 4.5472 -0.7710 1.2389 6 6 4.9422 -1.5530 2.4933 7 6 6.4445 -1.6142 2.5948 8 8 7.1316 -1.0842 1.7477 9 7 7.0244 -2.2580 3.6272 10 6 6.3127 -2.9434 4.7214 11 6 7.3179 -2.9614 5.9027 12 6 8.6626 -3.1824 5.1610 13 1 8.8202 -4.2411 4.9555 14 7 9.7784 -2.6350 5.9366 15 6 10.4154 -3.4156 6.8641 16 1 10.0951 -4.4345 7.0240 17 6 11.4730 -2.8971 7.5987 18 7 11.8631 -1.6552 7.4042 19 14 12.3416 -3.9616 8.8644 20 1 13.4684 -4.6804 8.2171 21 1 12.8646 -3.1036 9.9577 22 1 11.3823 -4.9472 9.4244 23 6 8.4716 -2.3934 3.8484 24 1 8.9290 -1.4082 3.9380 25 6 9.1065 -3.1579 2.6851 26 1 -1.0498 0.0001 0.0003 27 1 3.0089 1.0279 0.0354 28 1 3.0096 -0.4820 -0.9071 29 1 4.9492 0.2404 1.3003 30 1 4.9507 -1.2695 0.3575 31 1 4.5402 -2.5644 2.4324 32 1 4.5388 -1.0542 3.3745 33 1 5.4143 -2.3899 4.9948 34 1 6.0575 -3.9618 4.4286 35 1 7.1083 -3.7851 6.5853 36 1 7.3151 -2.0080 6.4311 37 1 10.0633 -1.7186 5.7961 38 1 12.6019 -1.2928 7.9179 39 1 8.6321 -4.1346 2.5901 40 1 8.9678 -2.5953 1.7618 41 1 10.1720 -3.2883 2.8745 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331889149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:48 Heat of formation + Delta-G solvation = -12.860704 kcal Electronic energy + Delta-G solvation = -21382.193505 eV Core-core repulsion = 18071.280092 eV Total energy + Delta-G solvation = -3310.913413 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08611 -38.43829 -37.39585 -34.15705 -33.77411 -32.19698 -31.20769 -30.75730 -29.06228 -27.22931 -25.22698 -24.18790 -23.01002 -22.04123 -20.12093 -19.03553 -18.48832 -17.45096 -17.20711 -16.70004 -16.22913 -15.80288 -15.36562 -14.93640 -14.73456 -14.15095 -13.61264 -13.50243 -13.37386 -12.92289 -12.88111 -12.67393 -12.17231 -12.01442 -11.76253 -11.68621 -11.58403 -11.18223 -11.05763 -10.87716 -10.83977 -10.75480 -10.61203 -10.26832 -10.05216 -9.85246 -9.80216 -9.61225 -8.96932 -8.43865 -7.05710 -5.83766 -3.14371 2.12925 2.45798 2.72953 3.02595 3.39668 3.44883 3.46679 3.66189 4.21008 4.52753 4.58477 4.82981 4.87486 4.95793 5.01177 5.05843 5.22717 5.30173 5.36115 5.46915 5.53725 5.57531 5.60812 5.64215 5.66963 5.77554 5.92473 6.07038 6.11205 6.28031 6.43557 6.56463 6.59354 6.70167 6.80781 6.89891 7.21265 7.63485 7.72146 8.27184 8.33679 9.45001 9.99367 10.33990 11.38338 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044593 B = 0.002734 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.753386 B =10240.776941 C =10470.982992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.191 4.191 3 C 0.173 3.827 4 O -0.387 6.387 5 C 0.079 3.921 6 C -0.135 4.135 7 C 0.531 3.469 8 O -0.547 6.547 9 N -0.607 5.607 10 C 0.097 3.903 11 C -0.156 4.156 12 C 0.176 3.824 13 H 0.066 0.934 14 N -0.715 5.715 15 C -0.244 4.244 16 H 0.072 0.928 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.126 3.874 24 H 0.078 0.922 25 C -0.154 4.154 26 H 0.222 0.778 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.386 0.614 38 H 0.257 0.743 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.761 0.177 -12.121 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.191 4.191 3 C 0.098 3.902 4 O -0.307 6.307 5 C 0.002 3.998 6 C -0.175 4.175 7 C 0.319 3.681 8 O -0.425 6.425 9 N -0.341 5.341 10 C -0.027 4.027 11 C -0.197 4.197 12 C 0.064 3.936 13 H 0.084 0.916 14 N -0.355 5.355 15 C -0.375 4.375 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.577 5.577 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.023 3.977 24 H 0.096 0.904 25 C -0.212 4.212 26 H 0.238 0.762 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.425 0.288 -12.367 22.192 hybrid contribution 0.481 -0.148 0.651 0.822 sum -17.945 0.140 -11.716 21.431 Atomic orbital electron populations 1.24970 0.95891 1.00065 0.98589 1.22595 0.93938 1.00945 1.01617 1.19053 0.84558 0.97076 0.89549 1.87863 1.21923 1.75918 1.44948 1.22178 0.79467 1.00476 0.97672 1.21432 0.92898 1.03335 0.99822 1.19903 0.89546 0.78026 0.80608 1.90690 1.65316 1.46540 1.39990 1.48555 1.08212 1.53269 1.24051 1.22453 0.96096 0.96602 0.87506 1.23615 0.96817 1.03030 0.96287 1.21251 0.88020 0.96242 0.88081 0.91587 1.42352 1.35213 1.14124 1.43805 1.19204 1.10516 0.95231 1.12537 0.90973 1.24777 0.99114 0.96452 1.00368 1.69665 1.30169 1.13800 1.44084 0.86174 0.79663 0.79225 0.80983 1.21642 1.21758 1.20691 1.21939 0.79096 1.00337 0.96377 0.90430 1.22040 1.01308 0.99508 0.98336 0.76168 0.90599 0.90634 0.91933 0.91984 0.88165 0.88101 0.91150 0.91574 0.90472 0.90637 0.77987 0.93357 0.93126 0.92023 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 19.25 29.55 0.57 -0.86 16 2 C -0.19 -1.85 13.73 -37.12 -0.51 -2.36 16 3 C 0.17 1.53 6.41 34.37 0.22 1.75 16 4 O -0.39 -4.27 10.30 -35.23 -0.36 -4.63 16 5 C 0.08 0.84 5.23 37.16 0.19 1.04 16 6 C -0.13 -1.47 5.07 -27.88 -0.14 -1.61 16 7 C 0.53 7.78 7.64 -10.99 -0.08 7.69 16 8 O -0.55 -9.72 15.03 5.56 0.08 -9.64 16 9 N -0.61 -9.05 3.07 -162.88 -0.50 -9.55 16 10 C 0.10 1.22 6.69 -2.41 -0.02 1.20 16 11 C -0.16 -2.48 6.79 -24.47 -0.17 -2.64 16 12 C 0.18 3.30 3.12 -66.09 -0.21 3.09 16 13 H 0.07 1.24 7.81 -51.93 -0.41 0.83 16 14 N -0.71 -17.13 5.24 -51.65 -0.27 -17.40 16 15 C -0.24 -6.47 9.97 -15.06 -0.15 -6.62 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 18 N -0.93 -27.48 13.06 55.49 0.72 -26.75 16 19 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.13 2.20 3.21 -66.95 -0.22 1.98 16 24 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 25 C -0.15 -2.54 9.09 37.15 0.34 -2.20 16 26 H 0.22 0.92 7.80 -54.10 -0.42 0.49 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.06 0.66 8.10 -51.93 -0.42 0.23 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.00 7.85 -51.93 -0.41 0.59 16 33 H 0.07 0.74 7.48 -51.93 -0.39 0.35 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 37 H 0.39 10.02 7.53 -40.82 -0.31 9.71 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.05 6.90 -51.93 -0.36 0.69 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -31.81 349.83 -6.80 -38.61 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.46 Total: 7.26 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -0.26 Total: 0.06 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.05 Total: -53.71 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.28 Total: -14.27 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.81 -6.80 -38.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331889149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.751 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds