Wall clock time and date at job start Fri Apr 10 2020 17:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47426 * 301.96811 * 3 2 1 5 5 C 1.42892 * 114.00170 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47303 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47015 * 180.02562 * 6 5 4 8 8 O 1.21273 * 120.00242 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99719 * 180.02562 * 7 6 5 10 10 C 1.47431 * 125.64867 * 0.04306 * 9 7 6 11 11 C 1.55121 * 104.94044 * 203.96847 * 10 9 7 12 12 C 1.55159 * 101.49016 * 323.22082 * 11 10 9 13 13 H 1.08999 * 110.71637 * 276.83260 * 12 11 10 14 14 N 1.46494 * 110.71905 * 153.73200 * 12 11 10 15 15 C 1.36945 * 119.99612 * 88.84902 * 14 12 11 16 16 H 1.07999 * 120.00077 * 359.97438 * 15 14 12 17 17 C 1.38812 * 119.99637 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00227 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99854 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47118 * 90.00067 * 19 17 15 21 21 H 1.48499 * 109.47293 * 210.00071 * 19 17 15 22 22 H 1.48504 * 109.47104 * 330.00316 * 19 17 15 23 23 C 1.47026 * 125.64766 * 180.02562 * 9 7 6 24 24 H 1.08991 * 110.01201 * 59.48910 * 23 9 7 25 25 C 1.52994 * 109.87943 * 298.38925 * 23 9 7 26 26 H 4.38451 * 5.44357 * 179.97438 * 4 1 2 27 27 H 1.09003 * 109.46952 * 181.97173 * 3 2 1 28 28 H 1.08997 * 109.47142 * 61.97422 * 3 2 1 29 29 H 1.09006 * 109.47086 * 60.00561 * 5 4 3 30 30 H 1.09003 * 109.47470 * 300.00641 * 5 4 3 31 31 H 1.09006 * 109.46547 * 60.00285 * 6 5 4 32 32 H 1.08994 * 109.47458 * 300.00544 * 6 5 4 33 33 H 1.09004 * 110.36572 * 322.93138 * 10 9 7 34 34 H 1.08994 * 110.36831 * 85.25475 * 10 9 7 35 35 H 1.09004 * 111.16490 * 205.12968 * 11 10 9 36 36 H 1.09009 * 110.93785 * 81.21660 * 11 10 9 37 37 H 0.96995 * 120.00290 * 269.11793 * 14 12 11 38 38 H 0.97005 * 120.00046 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.47709 * 302.19412 * 25 23 9 40 40 H 1.09004 * 109.47299 * 62.19643 * 25 23 9 41 41 H 1.09003 * 109.46915 * 182.19019 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1227 -0.7124 1.1430 5 6 4.5472 -0.7710 1.2389 6 6 4.9422 -1.5530 2.4933 7 6 6.4445 -1.6142 2.5948 8 8 7.1316 -1.0842 1.7477 9 7 7.0244 -2.2580 3.6272 10 6 6.3127 -2.9434 4.7214 11 6 7.3179 -2.9614 5.9027 12 6 8.6626 -3.1824 5.1610 13 1 8.8202 -4.2411 4.9555 14 7 9.7784 -2.6350 5.9366 15 6 10.4154 -3.4156 6.8641 16 1 10.0951 -4.4345 7.0240 17 6 11.4730 -2.8971 7.5987 18 7 11.8631 -1.6552 7.4042 19 14 12.3416 -3.9616 8.8644 20 1 13.4684 -4.6804 8.2171 21 1 12.8646 -3.1036 9.9577 22 1 11.3823 -4.9472 9.4244 23 6 8.4716 -2.3934 3.8484 24 1 8.9290 -1.4082 3.9380 25 6 9.1065 -3.1579 2.6851 26 1 -1.0498 0.0001 0.0003 27 1 3.0089 1.0279 0.0354 28 1 3.0096 -0.4820 -0.9071 29 1 4.9492 0.2404 1.3003 30 1 4.9507 -1.2695 0.3575 31 1 4.5402 -2.5644 2.4324 32 1 4.5388 -1.0542 3.3745 33 1 5.4143 -2.3899 4.9948 34 1 6.0575 -3.9618 4.4286 35 1 7.1083 -3.7851 6.5853 36 1 7.3151 -2.0080 6.4311 37 1 10.0633 -1.7186 5.7961 38 1 12.6019 -1.2928 7.9179 39 1 8.6321 -4.1346 2.5901 40 1 8.9678 -2.5953 1.7618 41 1 10.1720 -3.2883 2.8745 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331889149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:47 Heat of formation + Delta-G solvation = -33.750441 kcal Electronic energy + Delta-G solvation = -21383.099352 eV Core-core repulsion = 18071.280092 eV Total energy + Delta-G solvation = -3311.819260 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.30325 -39.34208 -38.61784 -35.91151 -34.47155 -33.55961 -32.63516 -31.94342 -30.60281 -27.93897 -26.84053 -25.31241 -24.61037 -23.19880 -21.56290 -20.10770 -19.30535 -19.10709 -18.37006 -17.63896 -17.29750 -16.88181 -16.59655 -16.17672 -15.82910 -15.48723 -15.32502 -14.83636 -14.62745 -14.27134 -14.01214 -13.65079 -13.49056 -13.30031 -13.11288 -12.92158 -12.69092 -12.64088 -12.52653 -12.43111 -12.17247 -12.07076 -11.70951 -11.55006 -11.52185 -11.44485 -10.95188 -10.83736 -10.57174 -9.66888 -9.02167 -7.93736 -5.23656 1.42128 1.49832 1.51116 1.59229 1.59440 1.82826 1.95137 2.57649 2.90825 3.37462 3.50479 3.64388 3.76042 3.80316 3.98099 4.05462 4.18770 4.22204 4.31574 4.37778 4.43732 4.44809 4.49310 4.53064 4.67894 4.75205 4.81522 4.82273 4.95819 5.03716 5.06222 5.23341 5.25575 5.34865 5.47254 5.55616 6.05963 6.26658 6.56694 6.60218 7.11314 7.33021 8.05474 8.28859 9.29748 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044593 B = 0.002734 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.753386 B =10240.776941 C =10470.982992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.239 4.239 3 C 0.167 3.833 4 O -0.398 6.398 5 C 0.082 3.918 6 C -0.124 4.124 7 C 0.528 3.472 8 O -0.584 6.584 9 N -0.609 5.609 10 C 0.104 3.896 11 C -0.149 4.149 12 C 0.169 3.831 13 H 0.071 0.929 14 N -0.730 5.730 15 C -0.235 4.235 16 H 0.084 0.916 17 C -0.078 4.078 18 N -0.972 5.972 19 Si 0.974 3.026 20 H -0.290 1.290 21 H -0.300 1.300 22 H -0.265 1.265 23 C 0.132 3.868 24 H 0.044 0.956 25 C -0.144 4.144 26 H 0.254 0.746 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.529 -1.467 -12.219 24.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.239 4.239 3 C 0.092 3.908 4 O -0.319 6.319 5 C 0.005 3.995 6 C -0.163 4.163 7 C 0.318 3.682 8 O -0.465 6.465 9 N -0.342 5.342 10 C -0.018 4.018 11 C -0.190 4.190 12 C 0.059 3.941 13 H 0.089 0.911 14 N -0.369 5.369 15 C -0.367 4.367 16 H 0.102 0.898 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.803 3.197 20 H -0.217 1.217 21 H -0.227 1.227 22 H -0.189 1.189 23 C 0.027 3.973 24 H 0.062 0.938 25 C -0.202 4.202 26 H 0.270 0.730 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.202 0.798 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.265 -1.403 -12.478 24.696 hybrid contribution 1.228 0.373 0.593 1.414 sum -20.037 -1.030 -11.885 23.319 Atomic orbital electron populations 1.25861 0.96803 0.98327 0.96765 1.23069 0.94830 1.02649 1.03363 1.19230 0.84645 0.97612 0.89359 1.87820 1.21674 1.76363 1.46017 1.22084 0.79596 1.00106 0.97666 1.21389 0.89517 1.04922 1.00499 1.20597 0.91048 0.76851 0.79689 1.90678 1.66531 1.47924 1.41391 1.48605 1.07028 1.53664 1.24903 1.22598 0.95640 0.98565 0.84984 1.23430 0.95715 1.02417 0.97413 1.21459 0.87889 0.96208 0.88502 0.91061 1.42533 1.36744 1.13367 1.44249 1.19624 1.09662 0.95621 1.11756 0.89830 1.25594 1.00650 0.97698 1.03067 1.69835 1.31010 1.15717 1.45656 0.85134 0.78593 0.77656 0.78325 1.21686 1.22696 1.18920 1.21625 0.81102 0.98454 0.96110 0.93773 1.21929 1.00551 1.00190 0.97504 0.72987 0.89658 0.89405 0.92659 0.92136 0.85847 0.86509 0.88020 0.88638 0.89226 0.92665 0.79760 0.94149 0.91185 0.92814 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 19.25 74.32 1.43 -0.80 16 2 C -0.24 -4.32 13.73 31.13 0.43 -3.89 16 3 C 0.17 2.78 6.41 70.18 0.45 3.23 16 4 O -0.40 -8.13 10.30 -148.98 -1.53 -9.66 16 5 C 0.08 1.64 5.23 71.98 0.38 2.01 16 6 C -0.12 -2.35 5.07 29.85 0.15 -2.20 16 7 C 0.53 14.64 7.64 87.66 0.67 15.31 16 8 O -0.58 -20.70 15.03 -3.01 -0.05 -20.74 16 9 N -0.61 -17.05 3.07 -787.63 -2.42 -19.47 16 10 C 0.10 2.24 6.69 86.93 0.58 2.82 16 11 C -0.15 -4.43 6.79 32.06 0.22 -4.21 16 12 C 0.17 6.22 3.12 46.18 0.14 6.37 16 13 H 0.07 2.56 7.81 -2.39 -0.02 2.54 16 14 N -0.73 -35.54 5.24 -317.32 -1.66 -37.20 16 15 C -0.24 -12.46 9.97 84.03 0.84 -11.62 16 16 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 17 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 18 N -0.97 -59.14 13.06 21.65 0.28 -58.86 16 19 Si 0.97 45.13 29.55 68.60 2.03 47.16 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 23 C 0.13 4.59 3.21 45.34 0.15 4.73 16 24 H 0.04 1.83 7.70 -2.39 -0.02 1.81 16 25 C -0.14 -4.72 9.09 71.98 0.65 -4.06 16 26 H 0.25 1.27 7.80 -4.43 -0.03 1.24 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.17 8.10 -2.38 -0.02 1.15 16 30 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 31 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.12 1.90 7.85 -2.39 -0.02 1.88 16 33 H 0.10 1.64 7.48 -2.38 -0.02 1.62 16 34 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.37 20.05 7.53 -92.71 -0.70 19.35 16 38 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.84 6.90 -2.39 -0.02 1.82 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -70.53 349.83 3.52 -67.01 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.31 Total: 27.99 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 6.55 Total: 3.77 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -3.79 Total: -115.52 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -1.58 Total: -30.41 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -70.53 3.52 -67.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331889149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.262 kcal (2) G-P(sol) polarization free energy of solvation -70.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds