Wall clock time and date at job start Fri Apr 10 2020 17:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42903 * 109.46972 * 322.86958 * 3 2 1 5 5 C 1.42899 * 113.99629 * 180.02562 * 4 3 2 6 6 C 1.53009 * 109.47113 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47158 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00127 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.47426 * 125.64766 * 0.02562 * 9 7 6 11 11 C 1.54905 * 104.83167 * 155.83329 * 10 9 7 12 12 C 1.55157 * 101.58304 * 37.01050 * 11 10 9 13 13 H 1.08995 * 110.72198 * 82.85623 * 12 11 10 14 14 N 1.46495 * 110.72088 * 205.95827 * 12 11 10 15 15 C 1.36941 * 120.00009 * 273.54169 * 14 12 11 16 16 H 1.08003 * 119.99446 * 359.97438 * 15 14 12 17 17 C 1.38810 * 120.00068 * 180.02562 * 15 14 12 18 18 N 1.31611 * 120.00273 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99812 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47075 * 89.99785 * 19 17 15 21 21 H 1.48492 * 109.46919 * 209.99815 * 19 17 15 22 22 H 1.48505 * 109.46969 * 329.99644 * 19 17 15 23 23 C 1.47021 * 125.64582 * 179.71468 * 9 7 6 24 24 H 1.08996 * 109.88450 * 300.50711 * 23 9 7 25 25 C 1.52993 * 109.88294 * 61.67884 * 23 9 7 26 26 H 4.38444 * 5.44449 * 179.97438 * 4 1 2 27 27 H 1.09002 * 109.47132 * 82.87190 * 3 2 1 28 28 H 1.09001 * 109.47213 * 202.87220 * 3 2 1 29 29 H 1.09007 * 109.47484 * 299.99646 * 5 4 3 30 30 H 1.09004 * 109.47459 * 59.99983 * 5 4 3 31 31 H 1.08997 * 109.46502 * 300.00085 * 6 5 4 32 32 H 1.08998 * 109.46733 * 60.00191 * 6 5 4 33 33 H 1.08992 * 110.36520 * 274.67614 * 10 9 7 34 34 H 1.08998 * 110.36246 * 36.88678 * 10 9 7 35 35 H 1.09006 * 111.00503 * 155.08182 * 11 10 9 36 36 H 1.09000 * 111.00755 * 278.93696 * 11 10 9 37 37 H 0.96997 * 120.00384 * 93.54694 * 14 12 11 38 38 H 0.96998 * 120.00588 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47413 * 58.54568 * 25 23 9 40 40 H 1.08997 * 109.47191 * 178.54090 * 25 23 9 41 41 H 1.08998 * 109.47213 * 298.54387 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.0733 0.8133 5 6 4.5473 -1.1622 0.8818 6 6 4.9424 -2.3411 1.7736 7 6 6.4448 -2.4345 1.8464 8 8 7.1319 -1.6370 1.2440 9 7 7.0248 -3.4042 2.5811 10 6 6.3133 -4.4346 3.3591 11 6 7.3193 -5.6064 3.4787 12 6 8.6632 -4.8479 3.6402 13 1 8.8155 -4.5495 4.6774 14 7 9.7815 -5.6688 3.1694 15 6 10.3825 -6.5591 4.0189 16 1 10.0322 -6.6557 5.0359 17 6 11.4425 -7.3366 3.5730 18 7 11.8703 -7.2178 2.3340 19 14 12.2618 -8.5515 4.7316 20 1 11.5796 -9.8668 4.6328 21 1 13.6906 -8.7056 4.3575 22 1 12.1665 -8.0477 6.1253 23 6 8.4720 -3.6135 2.7340 24 1 8.9257 -3.7931 1.7593 25 6 9.1088 -2.3865 3.3895 26 1 -1.0499 -0.0001 0.0003 27 1 3.0094 -0.1267 -1.0197 28 1 3.0089 0.9477 0.3994 29 1 4.9506 -1.3136 -0.1195 30 1 4.9494 -0.2392 1.2998 31 1 4.5392 -2.1902 2.7749 32 1 4.5405 -3.2638 1.3552 33 1 6.0557 -4.0534 4.3471 34 1 5.4153 -4.7558 2.8312 35 1 7.1067 -6.2158 4.3571 36 1 7.3202 -6.2145 2.5741 37 1 10.0964 -5.5818 2.2561 38 1 12.6108 -7.7613 2.0223 39 1 8.6448 -2.2112 4.3602 40 1 10.1767 -2.5591 3.5233 41 1 8.9586 -1.5150 2.7523 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331889150.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:50 Heat of formation + Delta-G solvation = -33.616617 kcal Electronic energy + Delta-G solvation = -21384.663478 eV Core-core repulsion = 18072.850021 eV Total energy + Delta-G solvation = -3311.813457 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.31034 -39.34561 -38.62074 -35.91200 -34.47164 -33.56147 -32.63641 -31.95089 -30.60292 -27.93884 -26.84127 -25.31361 -24.61519 -23.19522 -21.56102 -20.11521 -19.30736 -19.09380 -18.36809 -17.64115 -17.29942 -16.88638 -16.59547 -16.17736 -15.83047 -15.49191 -15.32145 -14.83099 -14.63349 -14.28107 -14.01249 -13.66284 -13.50459 -13.29339 -13.11417 -12.90258 -12.70025 -12.66142 -12.52014 -12.42758 -12.13968 -12.09176 -11.71054 -11.54979 -11.52315 -11.44504 -10.94834 -10.83533 -10.57179 -9.67058 -9.02096 -7.93593 -5.23533 1.42068 1.49928 1.51160 1.59098 1.59512 1.82801 1.94905 2.57730 2.90762 3.37620 3.50160 3.64273 3.76695 3.80230 3.97721 4.05463 4.18413 4.21804 4.31527 4.37320 4.43680 4.44802 4.49264 4.53267 4.67828 4.75181 4.81492 4.82359 4.96036 5.03704 5.06004 5.23417 5.25075 5.34870 5.47314 5.55872 6.05927 6.26795 6.56417 6.60206 7.11122 7.33169 8.05607 8.29013 9.29927 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044074 B = 0.002737 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.144311 B =10225.981181 C =10466.589671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.239 4.239 3 C 0.167 3.833 4 O -0.398 6.398 5 C 0.082 3.918 6 C -0.124 4.124 7 C 0.528 3.472 8 O -0.584 6.584 9 N -0.609 5.609 10 C 0.104 3.896 11 C -0.149 4.149 12 C 0.169 3.831 13 H 0.070 0.930 14 N -0.730 5.730 15 C -0.235 4.235 16 H 0.084 0.916 17 C -0.078 4.078 18 N -0.972 5.972 19 Si 0.974 3.026 20 H -0.287 1.287 21 H -0.301 1.301 22 H -0.266 1.266 23 C 0.133 3.867 24 H 0.045 0.955 25 C -0.144 4.144 26 H 0.254 0.746 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.476 12.368 0.305 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.239 4.239 3 C 0.092 3.908 4 O -0.319 6.319 5 C 0.005 3.995 6 C -0.163 4.163 7 C 0.318 3.682 8 O -0.465 6.465 9 N -0.342 5.342 10 C -0.018 4.018 11 C -0.190 4.190 12 C 0.060 3.940 13 H 0.088 0.912 14 N -0.369 5.369 15 C -0.366 4.366 16 H 0.102 0.898 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.803 3.197 20 H -0.214 1.214 21 H -0.228 1.228 22 H -0.191 1.191 23 C 0.028 3.972 24 H 0.063 0.937 25 C -0.202 4.202 26 H 0.270 0.730 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.202 0.798 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.210 12.629 0.223 24.686 hybrid contribution 1.194 -0.662 -0.322 1.403 sum -20.016 11.968 -0.099 23.321 Atomic orbital electron populations 1.25862 0.96803 0.97065 0.98028 1.23069 0.94831 1.03226 1.02786 1.19230 0.84643 0.90955 0.96018 1.87822 1.21673 1.51834 1.70547 1.22088 0.79595 0.98165 0.99607 1.21389 0.89516 1.01286 1.04137 1.20600 0.91049 0.79225 0.77310 1.90682 1.66533 1.42616 1.46686 1.48610 1.07016 1.30354 1.48229 1.22565 0.95647 0.86616 0.96943 1.23390 0.95736 0.97362 1.02500 1.21454 0.87871 0.88691 0.96020 0.91188 1.42528 1.36938 1.44957 1.12520 1.19613 1.10015 1.12509 0.94483 0.89844 1.25592 1.00480 1.02930 0.98005 1.69829 1.30288 1.44828 1.17282 0.85132 0.76913 0.79011 0.78643 1.21439 1.22786 1.19090 1.21596 0.81131 0.96111 0.98355 0.93718 1.21930 1.00542 0.97027 1.00696 0.72987 0.89654 0.89402 0.92650 0.92130 0.85858 0.86506 0.88623 0.88038 0.89275 0.92670 0.79759 0.94147 0.91193 0.92511 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 19.25 74.32 1.43 -0.80 16 2 C -0.24 -4.32 13.73 31.12 0.43 -3.89 16 3 C 0.17 2.78 6.41 70.17 0.45 3.23 16 4 O -0.40 -8.13 10.30 -148.98 -1.53 -9.66 16 5 C 0.08 1.63 5.23 71.99 0.38 2.01 16 6 C -0.12 -2.35 5.07 29.85 0.15 -2.20 16 7 C 0.53 14.62 7.64 87.66 0.67 15.29 16 8 O -0.58 -20.65 15.01 -3.05 -0.05 -20.70 16 9 N -0.61 -17.04 3.07 -788.09 -2.42 -19.46 16 10 C 0.10 2.24 6.69 86.85 0.58 2.83 16 11 C -0.15 -4.45 6.76 31.98 0.22 -4.23 16 12 C 0.17 6.23 3.11 46.18 0.14 6.38 16 13 H 0.07 2.52 7.84 -2.39 -0.02 2.50 16 14 N -0.73 -35.56 5.25 -317.34 -1.67 -37.22 16 15 C -0.23 -12.44 9.98 84.03 0.84 -11.60 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 17 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 18 N -0.97 -59.14 13.06 21.65 0.28 -58.86 16 19 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 C 0.13 4.61 3.21 45.34 0.15 4.76 16 24 H 0.04 1.85 7.70 -2.39 -0.02 1.83 16 25 C -0.14 -4.71 9.10 71.98 0.66 -4.06 16 26 H 0.25 1.28 7.80 -4.42 -0.03 1.24 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.17 8.10 -2.38 -0.02 1.15 16 30 H 0.06 1.21 8.10 -2.38 -0.02 1.19 16 31 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.12 1.90 7.85 -2.39 -0.02 1.88 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.10 1.64 7.47 -2.39 -0.02 1.62 16 35 H 0.09 2.44 8.14 -2.38 -0.02 2.43 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.37 20.05 7.51 -92.71 -0.70 19.35 16 38 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.05 1.85 6.88 -2.39 -0.02 1.83 16 Total: -1.00 -70.49 349.77 3.51 -66.97 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.31 Total: 27.98 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 6.55 Total: 3.80 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -3.80 Total: -115.54 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -1.58 Total: -30.36 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -70.49 3.51 -66.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331889150.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.356 kcal (2) G-P(sol) polarization free energy of solvation -70.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds