Wall clock time and date at job start Fri Apr 10 2020 17:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47746 * 2 1 4 4 C 1.53001 * 109.46898 * 239.99518 * 2 1 3 5 5 C 1.50701 * 109.47161 * 65.00476 * 4 2 1 6 6 C 1.39866 * 126.04240 * 269.69471 * 5 4 2 7 7 N 1.30834 * 108.20461 * 179.81755 * 6 5 4 8 8 N 1.40082 * 108.20366 * 0.43067 * 7 6 5 9 9 C 1.46506 * 126.03742 * 179.69808 * 8 7 6 10 10 C 1.34946 * 107.92880 * 359.72636 * 8 7 6 11 11 C 1.50702 * 109.46880 * 120.00453 * 2 1 3 12 12 O 1.20826 * 120.00303 * 119.99561 * 11 2 1 13 13 O 1.34228 * 119.99603 * 299.99284 * 11 2 1 14 14 C 1.45206 * 117.00001 * 180.02562 * 13 11 2 15 15 C 1.53002 * 109.47091 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.46891 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46946 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00275 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99709 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99529 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00192 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47123 * 89.99910 * 21 19 17 23 23 H 1.48503 * 109.46827 * 209.99657 * 21 19 17 24 24 H 1.48501 * 109.47006 * 329.99902 * 21 19 17 25 25 H 1.09007 * 109.46672 * 60.00013 * 1 2 3 26 26 H 1.08994 * 109.47746 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46635 * 300.00697 * 1 2 3 28 28 H 1.09003 * 109.47558 * 185.00382 * 4 2 1 29 29 H 1.08996 * 109.47574 * 305.00464 * 4 2 1 30 30 H 1.08001 * 125.89707 * 359.97438 * 6 5 4 31 31 H 1.09002 * 109.47456 * 270.03005 * 9 8 7 32 32 H 1.09000 * 109.47098 * 30.02901 * 9 8 7 33 33 H 1.08999 * 109.47128 * 150.02733 * 9 8 7 34 34 H 1.07994 * 126.12933 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.47157 * 299.99890 * 14 13 11 36 36 H 1.09004 * 109.47122 * 60.00023 * 14 13 11 37 37 H 1.08992 * 109.47056 * 300.00206 * 15 14 13 38 38 H 1.09004 * 109.47006 * 60.00090 * 15 14 13 39 39 H 1.09001 * 109.47372 * 300.00036 * 16 15 14 40 40 H 1.08996 * 109.47261 * 60.00575 * 16 15 14 41 41 H 0.96996 * 119.99496 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 6 0.4600 -0.1069 -3.2072 7 7 0.4703 0.7476 -4.1979 8 7 1.6649 1.4765 -4.1347 9 6 2.0803 2.5326 -5.0613 10 6 2.3658 1.0338 -3.0699 11 6 2.0323 -0.7105 1.2304 12 8 2.7269 -1.6930 1.1196 13 8 1.7081 -0.2519 2.4495 14 6 2.2276 -0.9858 3.5897 15 6 1.7565 -0.3185 4.8834 16 6 2.3035 -1.0922 6.0847 17 6 1.8390 -0.4353 7.3590 18 1 1.2157 0.4456 7.3164 19 6 2.2089 -0.9597 8.5794 20 7 1.8031 -0.3867 9.6915 21 14 3.2864 -2.4838 8.6532 22 1 4.7152 -2.0795 8.6734 23 1 2.9722 -3.2530 9.8841 24 1 3.0285 -3.3306 7.4609 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5140 0.8900 28 1 3.1263 -0.7997 -1.2056 29 1 1.6053 -1.7199 -1.2951 30 1 -0.3262 -0.8146 -2.9895 31 1 2.6424 2.0927 -5.8851 32 1 1.1985 3.0397 -5.4531 33 1 2.7089 3.2510 -4.5352 34 1 3.3316 1.3948 -2.7486 35 1 1.8640 -2.0129 3.5569 36 1 3.3171 -0.9848 3.5566 37 1 2.1204 0.7084 4.9159 38 1 0.6670 -0.3192 4.9167 39 1 1.9392 -2.1191 6.0520 40 1 3.3929 -1.0920 6.0516 41 1 2.0637 -0.7553 10.5500 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342506769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:57 Heat of formation + Delta-G solvation = -31.870760 kcal Electronic energy + Delta-G solvation = -20852.392439 eV Core-core repulsion = 17540.654688 eV Total energy + Delta-G solvation = -3311.737751 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.57816 -40.33102 -36.80449 -35.39626 -34.05846 -33.26402 -31.83415 -30.72429 -27.98987 -27.51098 -26.15333 -24.23092 -22.60740 -21.39176 -20.76916 -20.28781 -19.67351 -17.65081 -16.99266 -16.78287 -16.40850 -16.13317 -15.66305 -14.90966 -14.66190 -14.25286 -13.88290 -13.82171 -13.59394 -13.13949 -13.03615 -12.87585 -12.72403 -12.38282 -12.26410 -12.12284 -11.88542 -11.43282 -11.30789 -11.03864 -10.92249 -10.80075 -10.43770 -10.37183 -9.96067 -9.78086 -9.73566 -9.69730 -9.24210 -8.67923 -8.56337 -6.06651 -4.05523 1.55258 2.18252 2.34250 2.42143 2.95244 3.30165 3.37790 3.41439 4.15699 4.43361 4.49063 4.61170 4.70162 4.73014 4.76073 4.87970 4.97006 5.14511 5.23903 5.26676 5.28472 5.48231 5.51544 5.53316 5.63758 5.67172 5.88211 5.89078 5.98754 6.06975 6.33324 6.39990 6.40779 6.65653 6.70820 6.83844 7.22405 7.33567 7.36956 7.73287 7.93795 8.50350 8.97779 9.54925 11.06508 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.046561 B = 0.002402 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.215665 B =11652.605579 C =11791.841668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 H 0.105 0.895 4 C -0.025 4.025 5 C -0.232 4.232 6 C 0.056 3.944 7 N -0.299 5.299 8 N -0.379 5.379 9 C 0.102 3.898 10 C 0.058 3.942 11 C 0.460 3.540 12 O -0.514 6.514 13 O -0.355 6.355 14 C 0.065 3.935 15 C -0.101 4.101 16 C -0.011 4.011 17 C -0.521 4.521 18 H 0.074 0.926 19 C 0.066 3.934 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.183 0.817 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.174 0.826 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.019 0.981 40 H 0.014 0.986 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 3.955 -29.437 29.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 H 0.123 0.877 4 C -0.064 4.064 5 C -0.243 4.243 6 C -0.130 4.130 7 N -0.121 5.121 8 N -0.161 5.161 9 C -0.040 4.040 10 C -0.088 4.088 11 C 0.303 3.697 12 O -0.403 6.403 13 O -0.271 6.271 14 C -0.008 4.008 15 C -0.139 4.139 16 C -0.048 4.048 17 C -0.559 4.559 18 H 0.092 0.908 19 C -0.135 4.135 20 N -0.540 5.540 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.190 1.190 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.200 0.800 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.191 0.809 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.127 4.225 -30.356 30.649 hybrid contribution 1.205 -1.129 0.983 1.922 sum 1.333 3.096 -29.373 29.566 Atomic orbital electron populations 1.21793 0.92014 1.02924 1.03397 1.21049 0.98529 1.00739 0.89358 0.87698 1.19739 1.01535 0.97477 0.87639 1.19981 0.97455 1.04217 1.02660 1.23841 0.98211 0.98119 0.92834 1.77369 1.02227 1.09297 1.23166 1.48459 1.14687 1.30172 1.22743 1.21856 1.01626 0.88023 0.92462 1.22383 0.98858 0.97539 0.90015 1.23719 0.77484 0.82980 0.85507 1.90645 1.35945 1.26120 1.87599 1.86506 1.69517 1.56004 1.15093 1.23476 0.98733 0.95585 0.82999 1.21550 1.01579 1.00273 0.90491 1.19523 0.96042 0.96014 0.93259 1.21060 1.32466 1.13693 0.88681 0.90804 1.25028 0.95797 0.97024 0.95641 1.69912 1.45813 1.40749 0.97559 0.86777 0.81092 0.83699 0.77737 1.20222 1.21289 1.18967 0.91049 0.92064 0.91123 0.90370 0.90162 0.80009 0.90798 0.89298 0.89421 0.80895 0.91593 0.91645 0.91596 0.91537 0.96289 0.96745 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.85 37.16 0.33 -0.98 16 2 C -0.08 -0.78 2.82 -91.77 -0.26 -1.04 16 3 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.03 -0.23 4.52 -27.88 -0.13 -0.36 16 5 C -0.23 -2.00 4.77 -105.05 -0.50 -2.50 16 6 C 0.06 0.51 10.65 -17.37 -0.18 0.32 16 7 N -0.30 -3.10 12.58 30.62 0.39 -2.71 16 8 N -0.38 -3.08 4.01 -68.16 -0.27 -3.36 16 9 C 0.10 0.42 11.47 59.85 0.69 1.10 16 10 C 0.06 0.44 11.40 -17.22 -0.20 0.24 16 11 C 0.46 6.53 7.26 36.01 0.26 6.80 16 12 O -0.51 -8.59 15.67 -18.75 -0.29 -8.88 16 13 O -0.35 -5.66 10.12 -39.25 -0.40 -6.05 16 14 C 0.07 1.14 5.47 37.16 0.20 1.34 16 15 C -0.10 -2.02 5.53 -26.73 -0.15 -2.17 16 16 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 17 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 18 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 19 C 0.07 1.94 5.47 -17.81 -0.10 1.84 16 20 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 21 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 25 H 0.07 0.58 6.43 -51.93 -0.33 0.24 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 28 H 0.08 0.74 7.96 -51.93 -0.41 0.33 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 36 H 0.07 1.13 8.13 -51.93 -0.42 0.70 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 40 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -34.41 347.56 -6.31 -40.72 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -6.59 Total: -4.06 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -0.48 Total: -10.94 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.89 Total: -33.08 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.69 Total: -14.94 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.41 -6.31 -40.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342506769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.848 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds