Wall clock time and date at job start Fri Apr 10 2020 17:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 O 1.42904 * 109.47079 * 207.15222 * 3 2 1 5 5 C 1.42899 * 113.99881 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.47548 * 329.99846 * 5 4 3 7 7 C 1.52996 * 109.47208 * 90.00340 * 5 4 3 8 8 C 1.50702 * 109.46876 * 209.99898 * 5 4 3 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 5 4 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 5 12 12 C 1.52997 * 109.47555 * 180.02562 * 11 10 8 13 13 H 1.09000 * 112.84729 * 43.80692 * 12 11 10 14 14 C 1.53782 * 113.61653 * 174.99994 * 12 11 10 15 15 C 1.53780 * 87.07872 * 139.98291 * 14 12 11 16 16 H 1.09000 * 113.61346 * 219.93267 * 15 14 12 17 17 N 1.46504 * 113.61520 * 89.11690 * 15 14 12 18 18 C 1.36936 * 119.99967 * 154.99572 * 17 15 14 19 19 H 1.07996 * 120.00206 * 0.02562 * 18 17 15 20 20 C 1.38820 * 119.99696 * 179.97438 * 18 17 15 21 21 N 1.31622 * 120.00175 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99846 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47001 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46541 * 120.00234 * 22 20 18 25 25 H 1.48497 * 109.47515 * 240.00282 * 22 20 18 26 26 C 1.53774 * 87.08411 * 334.56798 * 15 14 12 27 27 H 4.38451 * 5.44445 * 179.97438 * 4 1 2 28 28 H 1.09005 * 109.47517 * 87.15561 * 3 2 1 29 29 H 1.09001 * 109.47464 * 327.15324 * 3 2 1 30 30 H 1.09001 * 109.47551 * 179.97438 * 7 5 4 31 31 H 1.09003 * 109.46851 * 299.99813 * 7 5 4 32 32 H 1.09002 * 109.47575 * 59.99333 * 7 5 4 33 33 H 0.97000 * 120.00317 * 0.28382 * 10 8 5 34 34 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 35 35 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 36 36 H 1.08997 * 113.61383 * 254.53330 * 14 12 11 37 37 H 1.08998 * 113.60973 * 25.43845 * 14 12 11 38 38 H 0.96999 * 119.99517 * 335.00117 * 17 15 14 39 39 H 0.96996 * 119.99802 * 180.02562 * 21 20 18 40 40 H 1.08998 * 113.61544 * 270.88323 * 26 15 14 41 41 H 1.09004 * 113.61702 * 139.97454 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.1997 0.6149 5 6 4.5463 1.3010 0.6658 6 1 4.9794 0.3030 0.7309 7 6 5.0538 1.9957 -0.5993 8 6 4.9498 2.1036 1.8758 9 8 4.1011 2.5450 2.6214 10 7 6.2540 2.3258 2.1328 11 6 6.6466 3.1010 3.3123 12 6 8.1719 3.2053 3.3696 13 1 8.6175 3.4294 2.4005 14 6 8.6856 4.1045 4.5065 15 6 9.7981 3.0646 4.7203 16 1 10.0254 2.8778 5.7698 17 7 10.9961 3.3128 3.9143 18 6 12.2110 2.8359 4.3287 19 1 12.2860 2.2765 5.2495 20 6 13.3460 3.0706 3.5647 21 7 13.2546 3.7519 2.4423 22 14 15.0035 2.4207 4.1304 23 1 14.8379 1.6934 5.4145 24 1 15.5485 1.4955 3.1046 25 1 15.9414 3.5560 4.3214 26 6 8.8427 2.0308 4.1014 27 1 -1.0502 -0.0003 -0.0003 28 1 3.0094 -0.0502 -1.0264 29 1 3.0098 -0.8625 0.5574 30 1 6.1403 2.0734 -0.5603 31 1 4.7619 1.4151 -1.4745 32 1 4.6206 2.9938 -0.6645 33 1 6.9329 1.9726 1.5367 34 1 6.2164 4.1005 3.2498 35 1 6.2819 2.6041 4.2114 36 1 9.0524 5.0726 4.1657 37 1 7.9951 4.1840 5.3462 38 1 10.9287 3.8149 3.0872 39 1 14.0476 3.9155 1.9083 40 1 8.1952 1.5434 4.8303 41 1 9.3363 1.3249 3.4334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479368158.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:23 Heat of formation + Delta-G solvation = 3.436266 kcal Electronic energy + Delta-G solvation = -20984.563452 eV Core-core repulsion = 17674.356728 eV Total energy + Delta-G solvation = -3310.206723 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.15418 -38.77456 -37.87036 -34.69997 -33.80011 -33.25324 -31.65861 -30.09793 -27.45722 -27.39663 -25.08778 -24.39280 -23.52238 -21.72181 -20.52625 -19.03771 -18.39051 -17.62533 -17.22967 -17.03791 -16.11518 -15.61478 -15.37476 -14.93722 -14.82967 -14.18814 -14.02494 -13.74630 -13.45023 -13.17839 -12.92682 -12.75296 -12.56220 -12.27468 -11.94336 -11.74094 -11.41461 -11.07152 -11.00847 -10.89581 -10.87624 -10.51556 -10.19548 -10.14479 -9.99561 -9.72731 -9.66013 -9.42872 -9.02780 -8.91753 -7.03450 -5.84325 -3.13273 2.05642 2.46987 2.54682 2.97935 3.38947 3.45178 3.47154 3.69656 4.20519 4.46348 4.52754 4.59165 4.69285 4.80500 5.00513 5.03097 5.05103 5.20790 5.26170 5.35712 5.42267 5.55743 5.59657 5.68339 5.78214 5.84629 5.93461 6.08141 6.19146 6.34791 6.37080 6.55983 6.66066 6.71411 6.87352 7.01210 7.23089 7.46284 7.66502 8.17102 8.34932 9.45754 10.03210 10.37429 11.38142 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.033076 B = 0.002591 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.343956 B =10802.117364 C =11192.432286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.192 4.192 3 C 0.170 3.830 4 O -0.352 6.352 5 C 0.071 3.929 6 H 0.092 0.908 7 C -0.173 4.173 8 C 0.511 3.489 9 O -0.524 6.524 10 N -0.721 5.721 11 C 0.132 3.868 12 C -0.119 4.119 13 H 0.093 0.907 14 C -0.148 4.148 15 C 0.167 3.833 16 H 0.062 0.938 17 N -0.706 5.706 18 C -0.241 4.241 19 H 0.073 0.927 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.168 4.168 27 H 0.222 0.778 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.402 0.598 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.068 0.932 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.255 -6.829 -6.126 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.192 4.192 3 C 0.094 3.906 4 O -0.270 6.270 5 C 0.009 3.991 6 H 0.109 0.891 7 C -0.231 4.231 8 C 0.296 3.704 9 O -0.399 6.399 10 N -0.374 5.374 11 C 0.009 3.991 12 C -0.138 4.138 13 H 0.112 0.888 14 C -0.188 4.188 15 C 0.055 3.945 16 H 0.080 0.920 17 N -0.344 5.344 18 C -0.373 4.373 19 H 0.091 0.909 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.209 4.209 27 H 0.239 0.761 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.237 0.763 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.805 -6.423 -5.406 21.511 hybrid contribution 1.178 -0.563 -0.546 1.415 sum -18.627 -6.986 -5.953 20.766 Atomic orbital electron populations 1.24982 0.95894 0.98029 1.00052 1.22435 0.93810 1.01955 1.01024 1.19185 0.85073 0.88168 0.98178 1.88118 1.19079 1.39282 1.80539 1.21944 0.82789 0.99910 0.94422 0.89073 1.22271 1.02097 1.02378 0.96311 1.20278 0.82875 0.81046 0.86239 1.90727 1.50239 1.50176 1.48782 1.45995 1.06635 1.55989 1.28789 1.21502 0.95165 0.95340 0.87095 1.22715 0.91786 0.99645 0.99663 0.88842 1.23447 0.99134 0.98920 0.97268 1.21058 0.86134 0.92387 0.94960 0.91952 1.42177 1.02098 1.64594 1.25567 1.19342 0.85021 1.27903 1.04993 0.90923 1.24771 0.98050 1.00902 0.97233 1.69669 1.28590 1.44852 1.14942 0.86096 0.84197 0.78036 0.77728 1.20490 1.21855 1.21825 1.23890 0.99728 0.97321 1.00001 0.76099 0.90537 0.90565 0.90412 0.91112 0.90919 0.76320 0.91736 0.91502 0.91293 0.90434 0.78121 0.93489 0.91383 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 19.25 29.55 0.57 -0.92 16 2 C -0.19 -1.96 13.73 -37.13 -0.51 -2.47 16 3 C 0.17 1.48 6.22 34.37 0.21 1.69 16 4 O -0.35 -4.26 9.48 -55.14 -0.52 -4.78 16 5 C 0.07 0.69 3.14 -27.88 -0.09 0.60 16 6 H 0.09 0.63 7.79 -51.93 -0.40 0.23 16 7 C -0.17 -1.32 9.43 37.16 0.35 -0.97 16 8 C 0.51 6.77 7.23 -10.98 -0.08 6.69 16 9 O -0.52 -9.37 16.50 -14.35 -0.24 -9.61 16 10 N -0.72 -8.39 5.45 -60.29 -0.33 -8.71 16 11 C 0.13 1.73 5.51 -4.04 -0.02 1.71 16 12 C -0.12 -1.71 3.63 -89.81 -0.33 -2.03 16 13 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 14 C -0.15 -2.31 7.39 -25.92 -0.19 -2.50 16 15 C 0.17 3.16 4.56 -67.12 -0.31 2.86 16 16 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 17 N -0.71 -16.97 5.31 -52.64 -0.28 -17.25 16 18 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 22 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 C -0.17 -2.69 7.43 -25.92 -0.19 -2.88 16 27 H 0.22 1.04 7.80 -54.08 -0.42 0.62 16 28 H 0.08 0.47 7.87 -51.93 -0.41 0.06 16 29 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.08 0.50 7.57 -51.93 -0.39 0.10 16 31 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.40 3.80 7.90 -40.82 -0.32 3.48 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.38 9.77 7.90 -40.82 -0.32 9.45 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 355.23 15.07 5.35 5.35 Total: -1.00 -33.94 355.23 -7.56 -41.50 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.42 Total: 8.67 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.83 Total: -5.38 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.12 Total: -52.61 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.76 Total: -14.39 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.94 -7.56 -41.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479368158.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.939 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds