Wall clock time and date at job start Fri Apr 10 2020 17:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47014 * 2 1 4 4 N 1.46504 * 109.47182 * 179.97438 * 3 2 1 5 5 C 1.35841 * 126.05787 * 124.99950 * 4 3 2 6 6 C 1.35728 * 107.56321 * 180.02562 * 5 4 3 7 7 N 1.40851 * 126.07346 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99560 * 180.02562 * 7 6 5 9 9 O 1.21603 * 120.00258 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99726 * 179.72622 * 8 7 6 11 11 C 1.46506 * 119.99880 * 0.26799 * 10 8 7 12 12 C 1.52998 * 109.46919 * 90.00602 * 11 10 8 13 13 C 1.46499 * 120.00195 * 180.27548 * 10 8 7 14 14 C 1.50697 * 109.47340 * 89.99486 * 13 10 8 15 15 H 1.08004 * 120.00186 * 0.02562 * 14 13 10 16 16 C 1.37881 * 120.00081 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99810 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99850 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46846 * 90.00279 * 18 16 14 20 20 H 1.48502 * 109.47123 * 209.99843 * 18 16 14 21 21 H 1.48501 * 109.47321 * 329.99922 * 18 16 14 22 22 C 1.40235 * 107.84964 * 0.22777 * 6 5 4 23 23 N 1.30839 * 108.33766 * 359.61606 * 22 6 5 24 24 H 1.09007 * 109.46935 * 60.00473 * 1 2 3 25 25 H 1.08998 * 109.47188 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47711 * 299.99969 * 1 2 3 27 27 H 1.08999 * 109.47222 * 239.99989 * 2 1 3 28 28 H 1.08997 * 109.47086 * 120.00037 * 2 1 3 29 29 H 1.08999 * 109.47135 * 59.99936 * 3 2 1 30 30 H 1.08997 * 109.47225 * 299.99952 * 3 2 1 31 31 H 1.08000 * 126.22089 * 0.06159 * 5 4 3 32 32 H 0.97000 * 119.99957 * 359.97438 * 7 6 5 33 33 H 1.08994 * 109.46858 * 210.00206 * 11 10 8 34 34 H 1.09001 * 109.47111 * 330.00312 * 11 10 8 35 35 H 1.09010 * 109.47071 * 299.99819 * 12 11 10 36 36 H 1.09004 * 109.47223 * 59.99467 * 12 11 10 37 37 H 1.08992 * 109.47174 * 179.97438 * 12 11 10 38 38 H 1.08994 * 109.47013 * 209.99592 * 13 10 8 39 39 H 1.09005 * 109.46881 * 329.99727 * 13 10 8 40 40 H 0.96999 * 119.99771 * 180.02562 * 17 16 14 41 41 H 1.07990 * 125.82947 * 179.73397 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3049 2.0723 -0.8987 6 6 5.5919 1.8250 -0.5458 7 7 6.7399 2.2927 -1.2147 8 6 7.9654 1.9705 -0.7556 9 8 8.0801 1.2764 0.2363 10 7 9.0638 2.4134 -1.3988 11 6 8.9256 3.2500 -2.5935 12 6 8.8852 4.7232 -2.1826 13 6 10.3960 2.0582 -0.9034 14 6 10.8452 0.7723 -1.5478 15 1 10.2029 0.2699 -2.2561 16 6 12.0764 0.2369 -1.2334 17 7 12.8583 0.8483 -0.3707 18 14 12.6329 -1.3575 -2.0318 19 1 13.3634 -1.0532 -3.2884 20 1 13.5305 -2.0896 -1.1024 21 1 11.4474 -2.1974 -2.3393 22 6 5.5757 1.0162 0.5998 23 7 4.3291 0.7927 0.9282 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9765 2.6630 -1.7411 32 1 6.6483 2.8461 -2.0061 33 1 9.7747 3.0807 -3.2557 34 1 8.0027 2.9921 -3.1129 35 1 8.0361 4.8925 -1.5203 36 1 9.8082 4.9810 -1.6632 37 1 8.7829 5.3457 -3.0714 38 1 11.0993 2.8534 -1.1502 39 1 10.3587 1.9289 0.1783 40 1 13.7245 0.4719 -0.1498 41 1 6.4438 0.6433 1.1227 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078626523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:18:38 Heat of formation + Delta-G solvation = 50.708389 kcal Electronic energy + Delta-G solvation = -21764.787370 eV Core-core repulsion = 18488.923271 eV Total energy + Delta-G solvation = -3275.864099 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.06848 -39.30028 -35.78021 -35.18645 -34.05197 -32.62328 -31.29696 -30.11259 -29.06001 -26.98344 -25.81904 -23.07236 -22.91142 -22.40120 -20.97456 -20.60629 -18.90006 -17.49195 -17.00434 -16.35747 -15.99080 -15.45899 -14.99690 -14.57149 -14.36939 -14.29502 -13.95725 -13.55224 -13.29245 -13.13218 -12.66742 -12.56097 -12.36795 -12.19866 -12.02585 -11.73735 -11.63412 -11.17882 -11.15215 -10.91014 -10.78692 -10.52847 -10.45176 -10.30797 -10.07213 -9.59682 -9.16172 -9.15681 -8.39324 -7.78633 -7.24574 -6.00026 -4.04324 1.99727 2.53413 3.07284 3.33080 3.36703 3.40298 3.46761 4.09520 4.38256 4.45082 4.56993 4.61307 4.82274 4.94311 5.04698 5.17396 5.28276 5.33801 5.34294 5.40916 5.59655 5.66703 5.68076 5.72739 5.84477 5.90588 5.98547 6.01166 6.21461 6.47004 6.61649 6.86715 7.11658 7.31556 7.40815 7.58192 7.72143 7.94298 8.00621 8.28226 8.68511 8.97077 9.34113 9.61293 11.07767 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021732 B = 0.003725 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.112639 B = 7515.838473 C = 8290.326169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.145 3.855 4 N -0.381 5.381 5 C -0.009 4.009 6 C 0.043 3.957 7 N -0.671 5.671 8 C 0.703 3.297 9 O -0.574 6.574 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.171 4.171 13 C 0.261 3.739 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.054 3.946 23 N -0.289 5.289 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.170 0.830 32 H 0.399 0.601 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.033 0.967 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.810 6.117 -4.604 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.023 3.977 4 N -0.168 5.168 5 C -0.156 4.156 6 C -0.063 4.063 7 N -0.321 5.321 8 C 0.405 3.595 9 O -0.450 6.450 10 N -0.343 5.343 11 C -0.017 4.017 12 C -0.230 4.230 13 C 0.142 3.858 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.134 4.134 23 N -0.111 5.111 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.187 0.813 32 H 0.235 0.765 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -21.336 5.047 -2.985 22.127 hybrid contribution 0.931 -0.082 -1.627 1.877 sum -20.405 4.965 -4.612 21.501 Atomic orbital electron populations 1.21710 0.94724 1.02359 1.01928 1.21826 0.96018 0.95877 1.03928 1.21616 0.74290 0.98522 1.03226 1.48276 1.05671 1.41060 1.21747 1.21664 0.89542 1.05291 0.99109 1.17584 0.85663 1.04942 0.98119 1.42268 1.02901 1.55544 1.31369 1.15818 0.79693 0.80652 0.83325 1.90758 1.84720 1.42168 1.27378 1.47561 1.06881 1.51884 1.27981 1.21352 1.01958 0.89817 0.88537 1.22254 1.02632 0.96744 1.01329 1.19212 0.74902 0.95322 0.96373 1.21471 1.01652 1.07915 1.25354 0.92497 1.24920 0.96514 0.97485 0.95166 1.69930 1.10522 1.39647 1.33369 0.86511 0.78516 0.83534 0.78932 1.20742 1.21119 1.19914 1.24661 0.95216 0.97612 0.95898 1.77312 1.01314 1.18848 1.13582 0.92571 0.92086 0.92373 0.91417 0.90323 0.90245 0.89125 0.81285 0.76482 0.89601 0.92492 0.93065 0.91821 0.92190 0.94879 0.93667 0.92759 0.77444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.14 -1.17 6.12 -26.73 -0.16 -1.34 16 3 C 0.14 1.26 6.52 -4.04 -0.03 1.23 16 4 N -0.38 -5.00 3.70 -61.02 -0.23 -5.23 16 5 C -0.01 -0.12 11.52 -16.67 -0.19 -0.31 16 6 C 0.04 0.70 6.90 -83.86 -0.58 0.13 16 7 N -0.67 -11.10 5.34 -14.39 -0.08 -11.17 16 8 C 0.70 15.06 8.25 -86.92 -0.72 14.34 16 9 O -0.57 -14.55 13.08 5.27 0.07 -14.48 16 10 N -0.61 -12.81 2.46 -180.80 -0.44 -13.25 16 11 C 0.11 1.68 5.90 -4.04 -0.02 1.66 16 12 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 13 C 0.26 6.79 5.16 -5.20 -0.03 6.76 16 14 C -0.52 -14.89 9.39 -34.44 -0.32 -15.22 16 15 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 18 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.05 0.99 10.84 -17.22 -0.19 0.81 16 23 N -0.29 -4.84 12.41 30.70 0.38 -4.46 16 24 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 31 H 0.17 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.40 5.18 6.55 -40.82 -0.27 4.92 16 33 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 34 H 0.06 0.72 6.36 -51.93 -0.33 0.39 16 35 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 39 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 41 H 0.21 4.31 5.91 -52.49 -0.31 4.00 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -34.38 345.24 -7.29 -41.67 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.32 Total: 3.27 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -1.59 Total: 7.35 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.37 Total: -60.03 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.07 Total: -14.48 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.38 -7.29 -41.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078626523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.379 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds