Wall clock time and date at job start Fri Apr 10 2020 17:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47014 * 2 1 4 4 N 1.46504 * 109.47182 * 179.97438 * 3 2 1 5 5 C 1.35841 * 126.05787 * 124.99950 * 4 3 2 6 6 C 1.35728 * 107.56321 * 180.02562 * 5 4 3 7 7 N 1.40851 * 126.07346 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99560 * 180.02562 * 7 6 5 9 9 O 1.21603 * 120.00258 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99726 * 179.72622 * 8 7 6 11 11 C 1.46506 * 119.99880 * 0.26799 * 10 8 7 12 12 C 1.52998 * 109.46919 * 90.00602 * 11 10 8 13 13 C 1.46499 * 120.00195 * 180.27548 * 10 8 7 14 14 C 1.50697 * 109.47340 * 89.99486 * 13 10 8 15 15 H 1.08004 * 120.00186 * 0.02562 * 14 13 10 16 16 C 1.37881 * 120.00081 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99810 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99850 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46846 * 90.00279 * 18 16 14 20 20 H 1.48502 * 109.47123 * 209.99843 * 18 16 14 21 21 H 1.48501 * 109.47321 * 329.99922 * 18 16 14 22 22 C 1.40235 * 107.84964 * 0.22777 * 6 5 4 23 23 N 1.30839 * 108.33766 * 359.61606 * 22 6 5 24 24 H 1.09007 * 109.46935 * 60.00473 * 1 2 3 25 25 H 1.08998 * 109.47188 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47711 * 299.99969 * 1 2 3 27 27 H 1.08999 * 109.47222 * 239.99989 * 2 1 3 28 28 H 1.08997 * 109.47086 * 120.00037 * 2 1 3 29 29 H 1.08999 * 109.47135 * 59.99936 * 3 2 1 30 30 H 1.08997 * 109.47225 * 299.99952 * 3 2 1 31 31 H 1.08000 * 126.22089 * 0.06159 * 5 4 3 32 32 H 0.97000 * 119.99957 * 359.97438 * 7 6 5 33 33 H 1.08994 * 109.46858 * 210.00206 * 11 10 8 34 34 H 1.09001 * 109.47111 * 330.00312 * 11 10 8 35 35 H 1.09010 * 109.47071 * 299.99819 * 12 11 10 36 36 H 1.09004 * 109.47223 * 59.99467 * 12 11 10 37 37 H 1.08992 * 109.47174 * 179.97438 * 12 11 10 38 38 H 1.08994 * 109.47013 * 209.99592 * 13 10 8 39 39 H 1.09005 * 109.46881 * 329.99727 * 13 10 8 40 40 H 0.96999 * 119.99771 * 180.02562 * 17 16 14 41 41 H 1.07990 * 125.82947 * 179.73397 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3049 2.0723 -0.8987 6 6 5.5919 1.8250 -0.5458 7 7 6.7399 2.2927 -1.2147 8 6 7.9654 1.9705 -0.7556 9 8 8.0801 1.2764 0.2363 10 7 9.0638 2.4134 -1.3988 11 6 8.9256 3.2500 -2.5935 12 6 8.8852 4.7232 -2.1826 13 6 10.3960 2.0582 -0.9034 14 6 10.8452 0.7723 -1.5478 15 1 10.2029 0.2699 -2.2561 16 6 12.0764 0.2369 -1.2334 17 7 12.8583 0.8483 -0.3707 18 14 12.6329 -1.3575 -2.0318 19 1 13.3634 -1.0532 -3.2884 20 1 13.5305 -2.0896 -1.1024 21 1 11.4474 -2.1974 -2.3393 22 6 5.5757 1.0162 0.5998 23 7 4.3291 0.7927 0.9282 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9765 2.6630 -1.7411 32 1 6.6483 2.8461 -2.0061 33 1 9.7747 3.0807 -3.2557 34 1 8.0027 2.9921 -3.1129 35 1 8.0361 4.8925 -1.5203 36 1 9.8082 4.9810 -1.6632 37 1 8.7829 5.3457 -3.0714 38 1 11.0993 2.8534 -1.1502 39 1 10.3587 1.9289 0.1783 40 1 13.7245 0.4719 -0.1498 41 1 6.4438 0.6433 1.1227 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078626523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:18:35 Heat of formation + Delta-G solvation = 27.503106 kcal Electronic energy + Delta-G solvation = -21765.793627 eV Core-core repulsion = 18488.923271 eV Total energy + Delta-G solvation = -3276.870356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -42.29161 -40.84158 -37.12998 -36.38031 -35.46982 -34.62163 -32.29141 -31.59106 -30.34213 -28.70642 -26.83582 -24.99240 -24.25177 -23.28861 -22.01768 -21.91237 -20.32214 -18.93867 -18.52768 -18.23320 -17.21513 -16.64085 -16.43196 -16.23496 -15.61121 -15.43836 -15.31271 -14.93404 -14.50907 -14.43333 -14.03780 -13.75529 -13.62869 -13.26081 -13.16678 -13.04882 -12.85443 -12.68177 -12.48074 -12.32078 -12.17305 -11.94328 -11.89823 -11.73663 -11.59360 -11.50026 -10.88989 -10.60529 -10.29242 -9.50894 -8.55258 -8.17227 -6.32869 0.87880 1.37298 1.40952 1.48189 1.52215 1.68832 1.95632 2.39309 2.55218 3.09686 3.16164 3.64861 3.96638 3.99551 4.11440 4.16923 4.34167 4.41643 4.44807 4.50559 4.59122 4.68287 4.73752 4.87617 4.92053 5.00750 5.07011 5.15884 5.19026 5.24463 5.30040 5.40263 5.40786 5.62178 5.85983 5.89834 6.11068 6.13020 6.23063 6.71517 6.76816 7.19616 7.34435 7.75918 8.87944 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021732 B = 0.003725 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.112639 B = 7515.838473 C = 8290.326169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.133 3.867 4 N -0.369 5.369 5 C 0.035 3.965 6 C 0.001 3.999 7 N -0.646 5.646 8 C 0.695 3.305 9 O -0.626 6.626 10 N -0.614 5.614 11 C 0.100 3.900 12 C -0.161 4.161 13 C 0.279 3.721 14 C -0.540 4.540 15 H 0.051 0.949 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.282 1.282 21 H -0.276 1.276 22 C 0.022 3.978 23 N -0.314 5.314 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.135 0.865 31 H 0.228 0.772 32 H 0.419 0.581 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.039 0.961 37 H 0.099 0.901 38 H 0.027 0.973 39 H -0.003 1.003 40 H 0.267 0.733 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.733 7.259 -7.586 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.014 3.986 4 N -0.155 5.155 5 C -0.113 4.113 6 C -0.104 4.104 7 N -0.298 5.298 8 C 0.397 3.603 9 O -0.506 6.506 10 N -0.349 5.349 11 C -0.022 4.022 12 C -0.219 4.219 13 C 0.158 3.842 14 C -0.579 4.579 15 H 0.069 0.931 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.791 3.209 19 H -0.187 1.187 20 H -0.207 1.207 21 H -0.201 1.201 22 C -0.164 4.164 23 N -0.138 5.138 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.153 0.847 31 H 0.244 0.756 32 H 0.259 0.741 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.117 0.883 38 H 0.045 0.955 39 H 0.016 0.984 40 H 0.075 0.925 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -24.327 6.226 -6.007 25.820 hybrid contribution 1.643 -0.403 -0.683 1.824 sum -22.684 5.823 -6.690 24.356 Atomic orbital electron populations 1.21668 0.92414 1.02771 1.03201 1.21769 0.97921 0.95536 1.02120 1.22152 0.71400 0.99076 1.05988 1.48814 1.07254 1.39025 1.20360 1.22433 0.87585 1.02591 0.98739 1.17790 0.86902 1.06996 0.98718 1.41769 1.01253 1.55182 1.31609 1.16035 0.81023 0.80379 0.82892 1.90745 1.85742 1.44428 1.29712 1.47417 1.05097 1.52782 1.29598 1.21705 1.03490 0.90518 0.86473 1.22171 1.01629 0.95258 1.02882 1.18620 0.77509 0.94563 0.93550 1.21733 1.01881 1.08863 1.25399 0.93068 1.25821 0.96614 1.00991 0.95652 1.70049 1.10965 1.41323 1.34518 0.85439 0.77933 0.78953 0.78593 1.18665 1.20738 1.20095 1.24226 0.95038 0.99613 0.97557 1.77250 1.01101 1.20207 1.15193 0.90628 0.92220 0.91710 0.92320 0.93163 0.89103 0.84674 0.75583 0.74109 0.90360 0.88786 0.92578 0.94180 0.88253 0.95482 0.98436 0.92456 0.81225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.91 71.98 0.71 -0.56 16 2 C -0.13 -2.01 6.12 30.59 0.19 -1.82 16 3 C 0.13 1.79 6.52 86.38 0.56 2.36 16 4 N -0.37 -8.72 3.70 -346.98 -1.29 -10.00 16 5 C 0.04 0.76 11.52 83.49 0.96 1.72 16 6 C 0.00 0.03 6.90 37.59 0.26 0.29 16 7 N -0.65 -20.77 5.34 -317.70 -1.70 -22.47 16 8 C 0.70 30.79 8.25 179.05 1.48 32.27 16 9 O -0.63 -34.18 13.08 -4.04 -0.05 -34.23 16 10 N -0.61 -26.57 2.46 -844.18 -2.07 -28.64 16 11 C 0.10 2.99 5.90 86.38 0.51 3.50 16 12 C -0.16 -3.87 10.24 71.98 0.74 -3.13 16 13 C 0.28 15.32 5.16 85.63 0.44 15.77 16 14 C -0.54 -31.69 9.39 25.60 0.24 -31.45 16 15 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 16 C 0.01 0.47 5.46 84.66 0.46 0.93 16 17 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 18 Si 0.97 45.86 29.54 68.60 2.03 47.89 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 22 C 0.02 0.84 10.84 85.33 0.92 1.76 16 23 N -0.31 -10.70 12.41 -56.79 -0.70 -11.40 16 24 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.14 0.72 8.07 -2.39 -0.02 0.70 16 31 H 0.23 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.42 9.57 6.55 -92.71 -0.61 8.97 16 33 H 0.08 2.46 8.07 -2.39 -0.02 2.44 16 34 H 0.09 2.08 6.36 -2.39 -0.02 2.07 16 35 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.03 1.49 8.07 -2.39 -0.02 1.48 16 39 H 0.00 -0.16 7.42 -2.38 -0.02 -0.18 16 40 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.17 7.89 5.91 -2.92 -0.02 7.87 16 Total: -1.00 -82.43 345.24 4.39 -78.04 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.41 Total: 15.89 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 7.48 Total: 21.64 kcal Atomic # 7 Polarization: -123.75 SS G_CDS: -5.48 Total: -129.22 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.05 Total: -34.23 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -82.43 4.39 -78.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078626523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.540 kcal (2) G-P(sol) polarization free energy of solvation -82.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds