Wall clock time and date at job start Fri Apr 10 2020 17:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47605 * 2 1 4 4 C 1.50697 * 109.47241 * 179.97438 * 3 2 1 5 5 C 1.39768 * 125.83726 * 125.23811 * 4 3 2 6 6 C 1.36099 * 107.82271 * 180.13652 * 5 4 3 7 7 N 1.39508 * 126.21334 * 179.90375 * 6 5 4 8 8 C 1.34768 * 120.00182 * 359.69047 * 7 6 5 9 9 O 1.21593 * 119.99825 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00545 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00694 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.46342 * 324.99575 * 11 10 8 13 13 C 1.52998 * 109.47185 * 84.99510 * 11 10 8 14 14 C 1.50701 * 109.47260 * 204.99997 * 11 10 8 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 11 10 16 16 C 1.37871 * 119.99694 * 180.27562 * 14 11 10 17 17 N 1.31523 * 119.99908 * 179.72112 * 16 14 11 18 18 Si 1.86800 * 120.00405 * 359.71709 * 16 14 11 19 19 H 1.48500 * 109.47210 * 90.00069 * 18 16 14 20 20 H 1.48504 * 109.47424 * 210.00300 * 18 16 14 21 21 H 1.48502 * 109.46888 * 330.00390 * 18 16 14 22 22 N 1.35252 * 107.57406 * 359.64165 * 6 5 4 23 23 C 1.46500 * 126.04822 * 180.18867 * 22 6 5 24 24 N 1.30843 * 125.83807 * 304.97261 * 4 3 2 25 25 H 1.09004 * 109.47277 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47257 * 300.00283 * 1 2 3 27 27 H 1.09003 * 109.47344 * 60.00337 * 1 2 3 28 28 H 1.09000 * 109.47257 * 239.99717 * 2 1 3 29 29 H 1.09007 * 109.46747 * 120.00063 * 2 1 3 30 30 H 1.09007 * 109.46681 * 59.99629 * 3 2 1 31 31 H 1.09003 * 109.46494 * 300.00183 * 3 2 1 32 32 H 1.08000 * 126.08793 * 0.02562 * 5 4 3 33 33 H 0.97002 * 119.99610 * 179.69201 * 7 6 5 34 34 H 0.97006 * 119.99365 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.46783 * 180.02562 * 13 11 10 36 36 H 1.09005 * 109.46870 * 300.00240 * 13 11 10 37 37 H 1.08998 * 109.47156 * 60.00179 * 13 11 10 38 38 H 0.96995 * 120.00181 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.46610 * 89.99959 * 23 22 6 40 40 H 1.09002 * 109.46820 * 209.99887 * 23 22 6 41 41 H 1.09001 * 109.46889 * 329.99863 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3658 2.0959 -0.9246 6 6 5.6599 1.8505 -0.5820 7 7 6.7921 2.3185 -1.2494 8 6 6.6571 3.0869 -2.3483 9 8 5.5485 3.3719 -2.7584 10 7 7.7508 3.5385 -2.9933 11 6 7.6041 4.3743 -4.1876 12 1 6.7302 4.0500 -4.7527 13 6 7.4276 5.8353 -3.7691 14 6 8.8351 4.2430 -5.0469 15 1 9.6459 3.6016 -4.7344 16 6 8.9289 4.9466 -6.2289 17 7 10.0056 4.8364 -6.9761 18 14 7.5268 6.0565 -6.7690 19 1 7.7402 7.4227 -6.2276 20 1 7.4835 6.1131 -8.2524 21 1 6.2421 5.5160 -6.2565 22 7 5.6490 1.0754 0.5263 23 6 6.8265 0.5755 1.2403 24 7 4.3127 0.8345 0.8702 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 4.0311 2.6885 -1.7631 33 1 7.6765 2.0908 -0.9224 34 1 8.6353 3.3108 -2.6664 35 1 7.3179 6.4570 -4.6578 36 1 6.5371 5.9301 -3.1476 37 1 8.3014 6.1595 -3.2040 38 1 10.0715 5.3311 -7.8078 39 1 7.1189 1.2938 2.0064 40 1 6.5888 -0.3793 1.7093 41 1 7.6478 0.4402 0.5366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121096934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:51 Heat of formation + Delta-G solvation = 47.571414 kcal Electronic energy + Delta-G solvation = -21727.729056 eV Core-core repulsion = 18451.728927 eV Total energy + Delta-G solvation = -3276.000129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.38816 -39.47561 -35.84368 -35.25365 -34.22962 -32.72454 -32.46265 -30.17470 -28.55025 -28.16601 -25.45502 -25.23542 -22.67164 -21.90832 -20.62077 -19.99376 -19.75120 -18.12534 -17.42078 -16.28123 -15.88364 -15.62755 -15.17157 -14.85786 -14.58169 -14.39718 -13.86269 -13.53343 -13.35817 -13.35051 -13.04231 -12.71450 -12.49324 -12.23875 -12.19714 -11.95653 -11.48532 -11.44566 -11.30675 -10.90908 -10.83262 -10.58231 -10.34976 -10.22435 -9.75824 -9.48868 -9.29435 -8.82993 -8.72119 -8.38004 -7.78236 -6.25847 -4.29262 1.95599 2.15599 2.96069 3.06382 3.21156 3.33733 3.38033 3.66795 4.27733 4.42865 4.52972 4.79888 4.93979 4.99340 5.02135 5.09163 5.21392 5.31254 5.43309 5.63422 5.68804 5.75217 5.83661 5.91244 6.11552 6.19314 6.22966 6.26296 6.31109 6.35085 6.50084 6.73405 6.88996 6.99565 7.19091 7.22132 7.34595 7.45928 7.88246 8.18791 8.48094 8.71160 8.93116 9.34262 10.86168 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.003703 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.434230 B = 7560.429055 C = 8407.045886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.036 4.036 4 C 0.088 3.912 5 C -0.281 4.281 6 C 0.336 3.664 7 N -0.668 5.668 8 C 0.703 3.297 9 O -0.567 6.567 10 N -0.707 5.707 11 C 0.254 3.746 12 H 0.052 0.948 13 C -0.164 4.164 14 C -0.537 4.537 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.891 5.891 18 Si 0.886 3.114 19 H -0.276 1.276 20 H -0.293 1.293 21 H -0.260 1.260 22 N -0.398 5.398 23 C 0.103 3.897 24 N -0.300 5.300 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.175 0.825 33 H 0.402 0.598 34 H 0.393 0.607 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.053 0.947 38 H 0.268 0.732 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.491 -7.571 15.743 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.076 4.076 4 C -0.078 4.078 5 C -0.313 4.313 6 C 0.115 3.885 7 N -0.319 5.319 8 C 0.403 3.597 9 O -0.443 6.443 10 N -0.359 5.359 11 C 0.151 3.849 12 H 0.070 0.930 13 C -0.222 4.222 14 C -0.575 4.575 15 H 0.098 0.902 16 C -0.125 4.125 17 N -0.528 5.528 18 Si 0.715 3.285 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.185 1.185 22 N -0.186 5.186 23 C -0.039 4.039 24 N -0.124 5.124 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.192 0.808 33 H 0.237 0.763 34 H 0.227 0.773 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.167 -7.952 16.185 20.701 hybrid contribution 0.695 0.903 -0.690 1.332 sum -9.472 -7.049 15.495 19.481 Atomic orbital electron populations 1.21783 0.95757 1.01553 1.01846 1.21464 0.95425 0.96082 1.02610 1.20045 0.86448 0.97814 1.03244 1.22142 0.96433 0.95923 0.93285 1.21575 0.88865 1.13467 1.07382 1.17697 0.88639 0.94241 0.87880 1.42112 1.06697 1.53932 1.29147 1.15814 0.86072 0.78751 0.79106 1.90827 1.24044 1.62200 1.67216 1.45442 1.05981 1.53974 1.30517 1.19076 0.99083 0.85559 0.81181 0.93037 1.22493 1.00014 0.99381 1.00313 1.21001 1.02195 1.29219 1.05112 0.90181 1.24814 0.95699 0.96132 0.95815 1.69861 1.27358 1.41872 1.13722 0.86872 0.83524 0.81130 0.76966 1.20250 1.22085 1.18486 1.48351 1.06112 1.42335 1.21805 1.21742 0.84088 1.01067 0.97016 1.77302 0.84712 1.26520 1.23830 0.92831 0.92750 0.92568 0.91903 0.91547 0.90446 0.89802 0.80787 0.76296 0.77339 0.93271 0.94335 0.92812 0.92184 0.91032 0.89106 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.15 0.37 -0.87 16 2 C -0.12 -1.20 5.89 -26.73 -0.16 -1.36 16 3 C -0.04 -0.41 5.79 -27.88 -0.16 -0.58 16 4 C 0.09 1.31 6.48 -82.44 -0.53 0.78 16 5 C -0.28 -4.78 9.57 -39.78 -0.38 -5.16 16 6 C 0.34 5.27 7.66 -153.14 -1.17 4.10 16 7 N -0.67 -9.74 5.42 -15.85 -0.09 -9.83 16 8 C 0.70 13.11 8.50 -86.93 -0.74 12.38 16 9 O -0.57 -12.50 13.13 5.28 0.07 -12.43 16 10 N -0.71 -13.37 5.07 -59.81 -0.30 -13.67 16 11 C 0.25 5.86 2.15 -69.08 -0.15 5.71 16 12 H 0.05 1.31 6.64 -51.93 -0.34 0.97 16 13 C -0.16 -3.55 8.96 37.16 0.33 -3.22 16 14 C -0.54 -14.08 9.31 -34.44 -0.32 -14.40 16 15 H 0.08 2.20 7.98 -52.49 -0.42 1.78 16 16 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 17 N -0.89 -25.90 13.96 55.43 0.77 -25.12 16 18 Si 0.89 21.28 24.37 -169.99 -4.14 17.14 16 19 H -0.28 -6.41 6.86 56.52 0.39 -6.02 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 22 N -0.40 -5.42 4.02 -67.17 -0.27 -5.69 16 23 C 0.10 0.87 11.28 59.85 0.68 1.55 16 24 N -0.30 -4.50 12.53 33.65 0.42 -4.07 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 32 H 0.18 3.30 5.82 -52.49 -0.31 2.99 16 33 H 0.40 4.29 7.98 -40.82 -0.33 3.96 16 34 H 0.39 6.32 8.55 -40.82 -0.35 5.97 16 35 H 0.05 1.10 3.25 -51.93 -0.17 0.94 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.51 7.50 -51.93 -0.39 0.12 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -32.70 335.55 -6.95 -39.64 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.13 Total: 7.97 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -2.34 Total: 1.01 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.54 Total: -58.38 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.07 Total: -12.43 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.14 Total: 17.14 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.70 -6.95 -39.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121096934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.216 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds