Wall clock time and date at job start Fri Apr 10 2020 17:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47605 * 2 1 4 4 C 1.50697 * 109.47241 * 179.97438 * 3 2 1 5 5 C 1.39768 * 125.83726 * 125.23811 * 4 3 2 6 6 C 1.36099 * 107.82271 * 180.13652 * 5 4 3 7 7 N 1.39508 * 126.21334 * 179.90375 * 6 5 4 8 8 C 1.34768 * 120.00182 * 359.69047 * 7 6 5 9 9 O 1.21593 * 119.99825 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00545 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00694 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.46342 * 324.99575 * 11 10 8 13 13 C 1.52998 * 109.47185 * 84.99510 * 11 10 8 14 14 C 1.50701 * 109.47260 * 204.99997 * 11 10 8 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 11 10 16 16 C 1.37871 * 119.99694 * 180.27562 * 14 11 10 17 17 N 1.31523 * 119.99908 * 179.72112 * 16 14 11 18 18 Si 1.86800 * 120.00405 * 359.71709 * 16 14 11 19 19 H 1.48500 * 109.47210 * 90.00069 * 18 16 14 20 20 H 1.48504 * 109.47424 * 210.00300 * 18 16 14 21 21 H 1.48502 * 109.46888 * 330.00390 * 18 16 14 22 22 N 1.35252 * 107.57406 * 359.64165 * 6 5 4 23 23 C 1.46500 * 126.04822 * 180.18867 * 22 6 5 24 24 N 1.30843 * 125.83807 * 304.97261 * 4 3 2 25 25 H 1.09004 * 109.47277 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47257 * 300.00283 * 1 2 3 27 27 H 1.09003 * 109.47344 * 60.00337 * 1 2 3 28 28 H 1.09000 * 109.47257 * 239.99717 * 2 1 3 29 29 H 1.09007 * 109.46747 * 120.00063 * 2 1 3 30 30 H 1.09007 * 109.46681 * 59.99629 * 3 2 1 31 31 H 1.09003 * 109.46494 * 300.00183 * 3 2 1 32 32 H 1.08000 * 126.08793 * 0.02562 * 5 4 3 33 33 H 0.97002 * 119.99610 * 179.69201 * 7 6 5 34 34 H 0.97006 * 119.99365 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.46783 * 180.02562 * 13 11 10 36 36 H 1.09005 * 109.46870 * 300.00240 * 13 11 10 37 37 H 1.08998 * 109.47156 * 60.00179 * 13 11 10 38 38 H 0.96995 * 120.00181 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.46610 * 89.99959 * 23 22 6 40 40 H 1.09002 * 109.46820 * 209.99887 * 23 22 6 41 41 H 1.09001 * 109.46889 * 329.99863 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3658 2.0959 -0.9246 6 6 5.6599 1.8505 -0.5820 7 7 6.7921 2.3185 -1.2494 8 6 6.6571 3.0869 -2.3483 9 8 5.5485 3.3719 -2.7584 10 7 7.7508 3.5385 -2.9933 11 6 7.6041 4.3743 -4.1876 12 1 6.7302 4.0500 -4.7527 13 6 7.4276 5.8353 -3.7691 14 6 8.8351 4.2430 -5.0469 15 1 9.6459 3.6016 -4.7344 16 6 8.9289 4.9466 -6.2289 17 7 10.0056 4.8364 -6.9761 18 14 7.5268 6.0565 -6.7690 19 1 7.7402 7.4227 -6.2276 20 1 7.4835 6.1131 -8.2524 21 1 6.2421 5.5160 -6.2565 22 7 5.6490 1.0754 0.5263 23 6 6.8265 0.5755 1.2403 24 7 4.3127 0.8345 0.8702 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 4.0311 2.6885 -1.7631 33 1 7.6765 2.0908 -0.9224 34 1 8.6353 3.3108 -2.6664 35 1 7.3179 6.4570 -4.6578 36 1 6.5371 5.9301 -3.1476 37 1 8.3014 6.1595 -3.2040 38 1 10.0715 5.3311 -7.8078 39 1 7.1189 1.2938 2.0064 40 1 6.5888 -0.3793 1.7093 41 1 7.6478 0.4402 0.5366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121096934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:51 Heat of formation + Delta-G solvation = 24.932062 kcal Electronic energy + Delta-G solvation = -21728.710772 eV Core-core repulsion = 18451.728927 eV Total energy + Delta-G solvation = -3276.981845 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.57779 -40.92821 -37.26147 -36.56146 -35.50876 -34.41735 -33.64215 -31.86603 -29.69086 -29.13984 -27.21177 -26.34178 -24.19020 -22.76080 -22.15865 -21.39440 -21.00372 -19.62604 -18.63093 -18.09953 -17.25880 -16.98101 -16.58223 -16.05659 -15.90968 -15.55218 -15.13680 -14.92897 -14.81639 -14.48808 -14.19022 -14.10954 -13.79544 -13.53379 -13.37270 -13.23547 -12.95248 -12.76584 -12.39201 -12.17533 -12.12134 -11.91931 -11.71314 -11.57413 -11.38917 -11.27601 -11.05867 -10.86616 -10.06925 -9.74718 -9.05891 -8.37239 -6.43511 0.76711 0.95610 1.30457 1.39306 1.48287 1.72647 1.93998 2.22859 2.27995 2.99500 3.15857 3.51739 3.88487 4.16812 4.23761 4.37933 4.41107 4.48893 4.52055 4.57586 4.59560 4.63744 4.70668 4.83799 4.87398 4.98452 4.99827 5.05214 5.06668 5.24598 5.31737 5.36843 5.43337 5.49885 5.58118 5.75985 5.87929 6.06236 6.24016 6.58630 6.72669 7.03036 7.21457 7.47493 8.77765 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.003703 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.434230 B = 7560.429055 C = 8407.045886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.037 4.037 4 C 0.085 3.915 5 C -0.312 4.312 6 C 0.328 3.672 7 N -0.647 5.647 8 C 0.706 3.294 9 O -0.601 6.601 10 N -0.702 5.702 11 C 0.262 3.738 12 H 0.027 0.973 13 C -0.158 4.158 14 C -0.533 4.533 15 H 0.060 0.940 16 C 0.031 3.969 17 N -0.933 5.933 18 Si 0.937 3.063 19 H -0.259 1.259 20 H -0.294 1.294 21 H -0.260 1.260 22 N -0.390 5.390 23 C 0.089 3.911 24 N -0.309 5.309 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.150 0.850 33 H 0.423 0.577 34 H 0.408 0.592 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.271 0.729 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.030 -7.740 17.505 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.076 4.076 4 C -0.080 4.080 5 C -0.344 4.344 6 C 0.106 3.894 7 N -0.299 5.299 8 C 0.405 3.595 9 O -0.480 6.480 10 N -0.356 5.356 11 C 0.157 3.843 12 H 0.045 0.955 13 C -0.216 4.216 14 C -0.571 4.571 15 H 0.078 0.922 16 C -0.169 4.169 17 N -0.572 5.572 18 Si 0.764 3.236 19 H -0.185 1.185 20 H -0.221 1.221 21 H -0.184 1.184 22 N -0.178 5.178 23 C -0.051 4.051 24 N -0.133 5.133 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.168 0.832 33 H 0.262 0.738 34 H 0.244 0.756 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.666 -8.158 18.020 22.473 hybrid contribution 0.915 0.848 -1.153 1.698 sum -9.752 -7.311 16.867 20.809 Atomic orbital electron populations 1.21754 0.93982 1.02319 1.02472 1.21398 0.96899 0.94947 1.01722 1.20175 0.84583 0.98848 1.04008 1.22515 0.97839 0.95194 0.92491 1.21534 0.90345 1.14698 1.07822 1.17667 0.88359 0.94743 0.88679 1.41641 1.07679 1.52783 1.27828 1.15797 0.85194 0.78829 0.79677 1.90829 1.25319 1.63424 1.68393 1.45075 1.06995 1.53844 1.29644 1.18707 0.96376 0.87158 0.82095 0.95472 1.22387 1.01050 0.97872 1.00284 1.21215 1.02517 1.27983 1.05400 0.92193 1.25515 0.97617 0.97663 0.96111 1.69966 1.29296 1.43456 1.14485 0.86039 0.80818 0.80256 0.76488 1.18515 1.22137 1.18442 1.48689 1.06860 1.41213 1.21032 1.22216 0.82910 1.02090 0.97876 1.77258 0.85454 1.26616 1.23965 0.92015 0.91788 0.92287 0.93139 0.92033 0.89080 0.89568 0.83219 0.73830 0.75597 0.93931 0.93467 0.91487 0.92016 0.89171 0.87825 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.45 16 2 C -0.11 -2.17 5.89 30.59 0.18 -1.99 16 3 C -0.04 -0.82 5.79 29.85 0.17 -0.65 16 4 C 0.09 2.50 6.48 43.08 0.28 2.78 16 5 C -0.31 -10.65 9.57 22.14 0.21 -10.44 16 6 C 0.33 9.90 7.66 131.31 1.01 10.91 16 7 N -0.65 -17.84 5.42 -322.31 -1.75 -19.59 16 8 C 0.71 25.73 8.50 179.06 1.52 27.25 16 9 O -0.60 -26.62 13.13 -4.01 -0.05 -26.67 16 10 N -0.70 -25.81 5.07 -461.42 -2.34 -28.15 16 11 C 0.26 11.88 2.15 44.24 0.10 11.98 16 12 H 0.03 1.39 6.64 -2.38 -0.02 1.37 16 13 C -0.16 -6.59 8.96 71.98 0.65 -5.94 16 14 C -0.53 -27.92 9.31 25.60 0.24 -27.68 16 15 H 0.06 3.32 7.98 -2.91 -0.02 3.29 16 16 C 0.03 1.70 5.45 84.65 0.46 2.16 16 17 N -0.93 -54.68 13.96 21.45 0.30 -54.38 16 18 Si 0.94 43.53 24.37 68.60 1.67 45.21 16 19 H -0.26 -11.32 6.86 99.48 0.68 -10.63 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 21 H -0.26 -11.98 6.54 99.48 0.65 -11.33 16 22 N -0.39 -9.88 4.02 -366.43 -1.47 -11.36 16 23 C 0.09 1.24 11.28 127.77 1.44 2.68 16 24 N -0.31 -8.85 12.53 -47.45 -0.59 -9.45 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.09 1.83 8.12 -2.39 -0.02 1.82 16 32 H 0.15 5.88 5.82 -2.91 -0.02 5.86 16 33 H 0.42 7.91 7.98 -92.71 -0.74 7.17 16 34 H 0.41 12.49 8.55 -92.70 -0.79 11.69 16 35 H 0.04 1.83 3.25 -2.38 -0.01 1.82 16 36 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.10 0.96 7.50 -2.39 -0.02 0.94 16 Total: -1.00 -70.65 335.55 2.17 -68.48 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -0.56 Total: 26.29 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 6.97 Total: 9.61 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -5.86 Total: -122.92 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.05 Total: -26.67 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.67 Total: 45.21 kcal Total: -70.65 2.17 -68.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121096934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.412 kcal (2) G-P(sol) polarization free energy of solvation -70.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds