Wall clock time and date at job start Fri Apr 10 2020 17:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 C 1.52993 * 109.47090 * 180.02562 * 17 16 14 19 19 C 1.53006 * 109.47090 * 179.97438 * 18 17 16 20 20 C 1.50695 * 109.47057 * 179.97438 * 19 18 17 21 21 C 1.35351 * 126.75057 * 125.00006 * 20 19 18 22 22 N 1.35306 * 106.17824 * 180.02562 * 21 20 19 23 23 H 0.97006 * 125.87392 * 179.97438 * 22 21 20 24 24 N 1.28722 * 108.26353 * 0.02562 * 22 21 20 25 25 N 1.28631 * 110.17376 * 359.72007 * 24 22 21 26 26 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 27 27 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 28 28 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 30 30 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 31 31 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 32 32 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 33 33 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 34 34 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 35 35 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 36 36 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 37 37 H 1.09000 * 109.46969 * 299.99498 * 18 17 16 38 38 H 1.08996 * 109.47373 * 59.99954 * 18 17 16 39 39 H 1.08991 * 109.46801 * 299.99841 * 19 18 17 40 40 H 1.09007 * 109.46627 * 59.99570 * 19 18 17 41 41 H 1.08007 * 126.91285 * 0.03925 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3655 3.8887 2.5497 18 6 -1.7614 4.5697 3.8612 19 6 -3.1808 5.1276 3.7381 20 6 -3.5710 5.7978 5.0301 21 6 -4.0075 7.0698 5.1830 22 7 -4.2355 7.2336 6.5066 23 1 -4.5565 8.0441 6.9321 24 7 -3.9523 6.1294 7.1045 25 7 -3.5583 5.2513 6.2511 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9924 1.1425 -0.6140 32 1 2.2853 2.1184 1.9978 33 1 0.0905 2.6048 3.4843 34 1 0.7469 4.1462 2.8830 35 1 -1.4015 4.6154 1.7380 36 1 -2.0586 3.0742 2.3391 37 1 -1.7254 3.8433 4.6731 38 1 -1.0683 5.3842 4.0714 39 1 -3.2164 5.8540 2.9263 40 1 -3.8742 4.3132 3.5276 41 1 -4.1462 7.8060 4.4050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132059309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:02 Heat of formation + Delta-G solvation = 25.773213 kcal Electronic energy + Delta-G solvation = -21181.376658 eV Core-core repulsion = 17904.431288 eV Total energy + Delta-G solvation = -3276.945370 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.60494 -39.20556 -36.16514 -35.14500 -33.59598 -32.45333 -32.24709 -31.36715 -29.30125 -27.21340 -24.97820 -23.63116 -22.34077 -21.79711 -21.13945 -20.20429 -19.44558 -18.64073 -17.70363 -16.47032 -16.05934 -15.86230 -15.43062 -15.16326 -14.67474 -14.23396 -13.84934 -13.28717 -13.21271 -12.65821 -12.57682 -12.39838 -12.21537 -12.09509 -11.76893 -11.52846 -11.37203 -11.12845 -10.96003 -10.89737 -10.75861 -10.64723 -10.48694 -10.42307 -9.77820 -9.66494 -9.50723 -9.05465 -8.84575 -8.49150 -8.00878 -6.53360 -4.20892 1.22285 2.20006 2.40681 3.35415 3.38801 3.46981 3.61241 4.02586 4.12303 4.42788 4.45254 4.66284 4.93537 4.97862 5.11524 5.17347 5.21841 5.39600 5.45810 5.56640 5.74540 5.84789 5.87364 5.94074 6.04625 6.06902 6.10656 6.28205 6.32893 6.44490 6.45994 6.73451 6.78764 6.95529 7.05726 7.38422 7.46643 7.69269 8.12294 8.25197 8.55762 8.73869 9.08019 9.49687 10.86960 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.042391 B = 0.002646 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.352814 B =10578.394592 C =10764.488028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.240 3.760 4 H 0.047 0.953 5 C -0.609 4.609 6 H 0.061 0.939 7 C 0.034 3.966 8 N -0.906 5.906 9 Si 1.050 2.950 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.288 1.288 13 N -0.705 5.705 14 C 0.499 3.501 15 O -0.553 6.553 16 C -0.143 4.143 17 C -0.101 4.101 18 C -0.113 4.113 19 C -0.035 4.035 20 C -0.012 4.012 21 C -0.047 4.047 22 N -0.395 5.395 23 H 0.448 0.552 24 N -0.084 5.084 25 N -0.259 5.259 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.268 0.732 32 H 0.392 0.608 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.149 12.765 12.566 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.137 3.863 4 H 0.065 0.935 5 C -0.647 4.647 6 H 0.079 0.921 7 C -0.171 4.171 8 N -0.540 5.540 9 Si 0.878 3.122 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.215 1.215 13 N -0.353 5.353 14 C 0.285 3.715 15 O -0.433 6.433 16 C -0.183 4.183 17 C -0.139 4.139 18 C -0.151 4.151 19 C -0.074 4.074 20 C -0.150 4.150 21 C -0.199 4.199 22 N -0.115 5.115 23 H 0.293 0.707 24 N -0.065 5.065 25 N -0.128 5.128 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.224 0.776 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -18.507 11.242 11.660 24.594 hybrid contribution 0.145 1.840 1.324 2.272 sum -18.363 13.082 12.984 26.017 Atomic orbital electron populations 1.21889 0.97136 0.98900 1.02198 1.22245 0.94047 0.99994 1.01243 1.19208 0.95752 0.88512 0.82875 0.93478 1.22185 0.89871 1.47935 1.04683 0.92084 1.25708 0.97505 0.93628 1.00270 1.70833 1.04436 1.42652 1.36072 0.83934 0.75312 0.77184 0.75743 1.20725 1.19863 1.21464 1.46275 1.14909 1.56146 1.17919 1.20544 0.82407 0.79078 0.89475 1.90643 1.51104 1.60140 1.41392 1.21685 0.98653 1.01167 0.96784 1.21300 0.95169 1.00657 0.96747 1.21554 0.94738 1.00379 0.98463 1.19963 0.97834 0.99862 0.89754 1.22224 1.04371 0.92444 0.95950 1.23567 1.08395 1.00651 0.87313 1.45102 1.45516 1.14122 1.06784 0.70719 1.78313 1.16637 0.89753 1.21778 1.75086 1.15633 1.23012 0.99053 0.93030 0.92938 0.95064 0.92363 0.92817 0.92193 0.77573 0.89540 0.89618 0.91216 0.91104 0.91085 0.92092 0.89898 0.89807 0.78931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.52 37.16 0.32 -2.60 16 2 C -0.14 -3.07 5.20 -26.73 -0.14 -3.21 16 3 C 0.24 5.77 1.81 -69.08 -0.13 5.64 16 4 H 0.05 1.25 6.07 -51.93 -0.32 0.93 16 5 C -0.61 -16.58 9.09 -34.44 -0.31 -16.89 16 6 H 0.06 1.73 7.95 -52.48 -0.42 1.32 16 7 C 0.03 0.98 5.42 -17.82 -0.10 0.88 16 8 N -0.91 -27.33 13.70 55.43 0.76 -26.57 16 9 Si 1.05 25.68 25.39 -169.99 -4.32 21.37 16 10 H -0.28 -6.51 6.73 56.52 0.38 -6.13 16 11 H -0.27 -6.47 6.38 56.52 0.36 -6.11 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 N -0.70 -14.11 5.03 -54.93 -0.28 -14.38 16 14 C 0.50 9.17 6.42 -10.98 -0.07 9.10 16 15 O -0.55 -11.85 13.12 5.56 0.07 -11.77 16 16 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 17 C -0.10 -1.19 4.50 -26.73 -0.12 -1.31 16 18 C -0.11 -1.10 5.19 -26.73 -0.14 -1.24 16 19 C -0.03 -0.29 5.79 -27.88 -0.16 -0.45 16 20 C -0.01 -0.11 6.50 -82.78 -0.54 -0.65 16 21 C -0.05 -0.29 12.04 -17.05 -0.21 -0.49 16 22 N -0.39 -2.41 6.98 30.52 0.21 -2.19 16 23 H 0.45 0.78 8.96 -190.39 -1.71 -0.93 16 24 N -0.08 -0.89 13.38 60.35 0.81 -0.08 16 25 N -0.26 -3.13 12.40 33.29 0.41 -2.72 16 26 H 0.05 1.03 5.64 -51.93 -0.29 0.73 16 27 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.36 4.43 -51.93 -0.23 1.13 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.27 7.99 8.72 -40.82 -0.36 7.64 16 32 H 0.39 7.03 8.53 -40.82 -0.35 6.68 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.87 8.10 -51.93 -0.42 0.44 16 36 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.54 8.12 -51.93 -0.42 0.11 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.19 0.40 8.06 -52.48 -0.42 -0.02 16 LS Contribution 333.95 15.07 5.03 5.03 Total: -1.00 -34.76 333.95 -6.62 -41.39 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.58 Total: 3.19 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -1.75 Total: -13.25 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 1.92 Total: -45.95 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.07 Total: -11.77 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -4.32 Total: 21.37 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.76 -6.62 -41.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132059309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.161 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds