Wall clock time and date at job start Fri Apr 10 2020 17:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 C 1.52993 * 109.47090 * 180.02562 * 17 16 14 19 19 C 1.53006 * 109.47090 * 179.97438 * 18 17 16 20 20 C 1.50695 * 109.47057 * 179.97438 * 19 18 17 21 21 C 1.35351 * 126.75057 * 125.00006 * 20 19 18 22 22 N 1.35306 * 106.17824 * 180.02562 * 21 20 19 23 23 H 0.97006 * 125.87392 * 179.97438 * 22 21 20 24 24 N 1.28722 * 108.26353 * 0.02562 * 22 21 20 25 25 N 1.28631 * 110.17376 * 359.72007 * 24 22 21 26 26 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 27 27 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 28 28 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 30 30 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 31 31 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 32 32 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 33 33 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 34 34 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 35 35 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 36 36 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 37 37 H 1.09000 * 109.46969 * 299.99498 * 18 17 16 38 38 H 1.08996 * 109.47373 * 59.99954 * 18 17 16 39 39 H 1.08991 * 109.46801 * 299.99841 * 19 18 17 40 40 H 1.09007 * 109.46627 * 59.99570 * 19 18 17 41 41 H 1.08007 * 126.91285 * 0.03925 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3655 3.8887 2.5497 18 6 -1.7614 4.5697 3.8612 19 6 -3.1808 5.1276 3.7381 20 6 -3.5710 5.7978 5.0301 21 6 -4.0075 7.0698 5.1830 22 7 -4.2355 7.2336 6.5066 23 1 -4.5565 8.0441 6.9321 24 7 -3.9523 6.1294 7.1045 25 7 -3.5583 5.2513 6.2511 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9924 1.1425 -0.6140 32 1 2.2853 2.1184 1.9978 33 1 0.0905 2.6048 3.4843 34 1 0.7469 4.1462 2.8830 35 1 -1.4015 4.6154 1.7380 36 1 -2.0586 3.0742 2.3391 37 1 -1.7254 3.8433 4.6731 38 1 -1.0683 5.3842 4.0714 39 1 -3.2164 5.8540 2.9263 40 1 -3.8742 4.3132 3.5276 41 1 -4.1462 7.8060 4.4050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132059309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:02 Heat of formation + Delta-G solvation = -0.347791 kcal Electronic energy + Delta-G solvation = -21182.509349 eV Core-core repulsion = 17904.431288 eV Total energy + Delta-G solvation = -3278.078061 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.19387 -40.74649 -37.36786 -36.53408 -34.43155 -34.33399 -33.36179 -32.73205 -30.23812 -28.99535 -25.98246 -24.29808 -24.15661 -22.80443 -21.93416 -21.63943 -21.09040 -19.74308 -19.14521 -17.64534 -17.25653 -17.00331 -16.80555 -15.99393 -15.76128 -15.43547 -15.04679 -14.86439 -14.54796 -14.34647 -14.32208 -13.78594 -13.48743 -13.37577 -12.83351 -12.70369 -12.47197 -12.39197 -12.32484 -12.20286 -11.97269 -11.74139 -11.69486 -11.48018 -11.44300 -11.28760 -10.96085 -10.65362 -10.57874 -10.08288 -9.72765 -8.77594 -6.46252 0.69755 1.41412 1.50842 1.54034 1.68836 1.90344 2.04114 2.40167 2.61141 3.03230 3.52750 3.80706 3.97220 4.12902 4.20975 4.31390 4.32111 4.39994 4.44509 4.52167 4.56801 4.64204 4.75200 4.84252 4.91490 4.99102 5.07877 5.08869 5.16479 5.21243 5.30419 5.33517 5.46899 5.55877 5.57631 5.68902 5.72955 6.01050 6.10315 6.53055 6.95187 7.29561 7.50512 7.56300 8.61258 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.042391 B = 0.002646 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.352814 B =10578.394592 C =10764.488028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.135 4.135 3 C 0.245 3.755 4 H 0.024 0.976 5 C -0.604 4.604 6 H 0.039 0.961 7 C -0.012 4.012 8 N -0.936 5.936 9 Si 1.081 2.919 10 H -0.258 1.258 11 H -0.265 1.265 12 H -0.287 1.287 13 N -0.709 5.709 14 C 0.497 3.503 15 O -0.583 6.583 16 C -0.133 4.133 17 C -0.093 4.093 18 C -0.102 4.102 19 C -0.032 4.032 20 C -0.039 4.039 21 C -0.021 4.021 22 N -0.377 5.377 23 H 0.466 0.534 24 N -0.122 5.122 25 N -0.303 5.303 26 H 0.052 0.948 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.257 0.743 32 H 0.401 0.599 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.139 13.918 12.859 27.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.174 4.174 3 C 0.140 3.860 4 H 0.042 0.958 5 C -0.642 4.642 6 H 0.057 0.943 7 C -0.211 4.211 8 N -0.572 5.572 9 Si 0.904 3.096 10 H -0.184 1.184 11 H -0.190 1.190 12 H -0.213 1.213 13 N -0.358 5.358 14 C 0.285 3.715 15 O -0.464 6.464 16 C -0.173 4.173 17 C -0.131 4.131 18 C -0.140 4.140 19 C -0.071 4.071 20 C -0.178 4.178 21 C -0.174 4.174 22 N -0.100 5.100 23 H 0.315 0.685 24 N -0.102 5.102 25 N -0.171 5.171 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.236 0.764 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -20.515 12.414 12.029 26.827 hybrid contribution 0.752 1.600 1.282 2.184 sum -19.763 14.013 13.311 27.643 Atomic orbital electron populations 1.21766 0.95187 1.00466 1.01637 1.22154 0.95715 0.98453 1.01046 1.18869 0.93273 0.89761 0.84117 0.95806 1.22395 0.91772 1.46365 1.03684 0.94258 1.26870 0.97719 0.93676 1.02883 1.70933 1.05390 1.44901 1.36017 0.83528 0.74365 0.78457 0.73222 1.18377 1.18977 1.21323 1.46177 1.16108 1.56596 1.16919 1.21409 0.81140 0.78108 0.90851 1.90628 1.51749 1.61048 1.43003 1.21718 0.99787 1.01767 0.94022 1.21234 0.93972 1.00215 0.97716 1.21413 0.95989 1.00040 0.96588 1.19945 0.96508 1.00306 0.90301 1.22497 1.05981 0.93909 0.95431 1.24193 1.05266 1.00156 0.87772 1.45157 1.43931 1.13878 1.07011 0.68513 1.78232 1.18538 0.91035 1.22374 1.75024 1.17070 1.24523 1.00457 0.92940 0.94135 0.92397 0.93222 0.92358 0.93390 0.76438 0.87612 0.87649 0.91714 0.92247 0.92267 0.91522 0.87573 0.90445 0.74522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 8.52 71.98 0.61 -4.52 16 2 C -0.13 -5.88 5.20 30.59 0.16 -5.72 16 3 C 0.24 11.65 1.81 44.24 0.08 11.73 16 4 H 0.02 1.26 6.07 -2.39 -0.01 1.25 16 5 C -0.60 -33.22 9.09 25.60 0.23 -32.99 16 6 H 0.04 2.28 7.95 -2.91 -0.02 2.26 16 7 C -0.01 -0.69 5.42 84.65 0.46 -0.23 16 8 N -0.94 -57.47 13.70 21.45 0.29 -57.18 16 9 Si 1.08 51.49 25.39 68.60 1.74 53.23 16 10 H -0.26 -11.34 6.73 99.48 0.67 -10.67 16 11 H -0.26 -12.16 6.38 99.48 0.63 -11.53 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 13 N -0.71 -27.77 5.03 -446.10 -2.24 -30.01 16 14 C 0.50 17.58 6.42 87.66 0.56 18.14 16 15 O -0.58 -24.39 13.12 -3.02 -0.04 -24.43 16 16 C -0.13 -3.21 5.70 29.85 0.17 -3.04 16 17 C -0.09 -2.03 4.50 30.59 0.14 -1.89 16 18 C -0.10 -1.80 5.19 30.59 0.16 -1.64 16 19 C -0.03 -0.46 5.79 29.85 0.17 -0.29 16 20 C -0.04 -0.66 6.50 41.60 0.27 -0.39 16 21 C -0.02 -0.18 12.04 83.49 1.01 0.82 16 22 N -0.38 -3.74 6.98 -57.35 -0.40 -4.14 16 23 H 0.47 0.42 8.96 -219.95 -1.97 -1.55 16 24 N -0.12 -2.47 13.38 37.02 0.50 -1.97 16 25 N -0.30 -7.14 12.40 -48.60 -0.60 -7.74 16 26 H 0.05 1.99 5.64 -2.39 -0.01 1.98 16 27 H 0.04 1.64 7.87 -2.38 -0.02 1.62 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 2.24 4.43 -2.39 -0.01 2.23 16 30 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.26 15.79 8.72 -92.71 -0.81 14.98 16 32 H 0.40 14.05 8.53 -92.71 -0.79 13.26 16 33 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 1.48 8.10 -2.38 -0.02 1.46 16 36 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.11 1.03 8.12 -2.39 -0.02 1.01 16 40 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.24 -0.25 8.06 -2.91 -0.02 -0.27 16 Total: -1.00 -76.93 333.95 1.41 -75.52 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -1.86 Total: 16.75 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 4.02 Total: -20.02 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -2.46 Total: -101.04 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.04 Total: -24.43 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 1.74 Total: 53.23 kcal Total: -76.93 1.41 -75.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132059309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.167 kcal (2) G-P(sol) polarization free energy of solvation -76.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds