Wall clock time and date at job start Fri Apr 10 2020 17:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46769 * 2 1 4 4 C 1.52996 * 109.47179 * 120.00110 * 2 1 3 5 5 C 1.53005 * 109.46811 * 174.99742 * 4 2 1 6 6 N 1.46505 * 109.46777 * 180.02562 * 5 4 2 7 7 C 1.34811 * 126.59466 * 125.27613 * 6 5 4 8 8 C 1.36597 * 106.83915 * 180.14652 * 7 6 5 9 9 C 1.47528 * 125.76960 * 179.89652 * 8 7 6 10 10 O 1.21593 * 119.99789 * 5.98767 * 9 8 7 11 11 N 1.34772 * 120.00016 * 185.98686 * 9 8 7 12 12 C 1.46500 * 119.99895 * 5.39684 * 11 9 8 13 13 C 1.46500 * 120.00047 * 185.39683 * 11 9 8 14 14 C 1.50701 * 109.46785 * 269.99948 * 13 11 9 15 15 H 1.07992 * 120.00211 * 0.02562 * 14 13 11 16 16 C 1.37878 * 119.99630 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99988 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00089 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46780 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47116 * 119.99937 * 18 16 14 21 21 H 1.48499 * 109.46940 * 239.99853 * 18 16 14 22 22 N 1.34393 * 108.45930 * 359.63627 * 8 7 6 23 23 N 1.28765 * 109.52622 * 0.22300 * 22 8 7 24 24 H 1.08998 * 109.47054 * 299.99528 * 1 2 3 25 25 H 1.08998 * 109.47550 * 59.99804 * 1 2 3 26 26 H 1.08996 * 109.47285 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47054 * 240.00472 * 2 1 3 28 28 H 1.09006 * 109.46911 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47727 * 300.00177 * 3 2 1 30 30 H 1.08998 * 109.47444 * 60.00584 * 3 2 1 31 31 H 1.08999 * 109.47361 * 55.00434 * 4 2 1 32 32 H 1.08996 * 109.47290 * 295.00134 * 4 2 1 33 33 H 1.09000 * 109.46516 * 60.00772 * 5 4 2 34 34 H 1.08996 * 109.47514 * 300.00255 * 5 4 2 35 35 H 1.08001 * 126.57869 * 0.02562 * 7 6 5 36 36 H 1.09002 * 109.46761 * 275.36949 * 12 11 9 37 37 H 1.09002 * 109.47163 * 35.36596 * 12 11 9 38 38 H 1.08996 * 109.47132 * 155.36977 * 12 11 9 39 39 H 1.09006 * 109.46917 * 29.99926 * 13 11 9 40 40 H 1.08997 * 109.46775 * 149.99876 * 13 11 9 41 41 H 0.97008 * 119.99976 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1878 6 7 4.0532 -1.5223 2.3837 7 6 4.8355 -2.6197 2.4145 8 6 5.0418 -2.9218 3.7306 9 6 5.8413 -4.0517 4.2410 10 8 6.4743 -4.7462 3.4692 11 7 5.8701 -4.3142 5.5626 12 6 5.0168 -3.5540 6.4791 13 6 6.7548 -5.3597 6.0826 14 6 6.0234 -6.6773 6.0930 15 1 5.0019 -6.7306 5.7465 16 6 6.6587 -7.8148 6.5439 17 7 7.9031 -7.7502 6.9645 18 14 5.7523 -9.4482 6.5562 19 1 4.3749 -9.2538 6.0366 20 1 6.4735 -10.4209 5.6966 21 1 5.6880 -9.9681 7.9457 22 7 4.3980 -2.0122 4.4819 23 7 3.8007 -1.1666 3.7163 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -1.7198 1.2951 32 1 1.7516 -0.1584 2.1369 33 1 3.9994 0.1675 1.1420 34 1 3.8532 -1.3939 0.3001 35 1 5.2230 -3.1580 1.5622 36 1 5.5156 -2.6243 6.7531 37 1 4.0694 -3.3274 5.9899 38 1 4.8305 -4.1445 7.3761 39 1 7.6368 -5.4387 5.4469 40 1 7.0601 -5.1055 7.0976 41 1 8.3500 -8.5505 7.2821 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151316525.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:08 Heat of formation + Delta-G solvation = 53.220930 kcal Electronic energy + Delta-G solvation = -21494.085364 eV Core-core repulsion = 18218.330217 eV Total energy + Delta-G solvation = -3275.755147 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.02578 -38.55849 -37.54111 -34.83479 -34.23165 -32.51247 -30.84660 -29.65382 -27.65507 -27.58968 -25.73190 -24.82100 -23.69220 -21.83970 -21.73070 -20.43778 -19.03513 -17.14650 -16.51701 -16.34276 -15.80340 -15.44348 -15.32932 -14.64164 -14.49754 -14.36921 -14.04805 -13.92590 -13.35633 -12.87411 -12.71417 -12.40396 -12.26879 -12.13008 -12.08399 -11.98339 -11.63559 -11.50921 -11.23021 -11.17676 -11.07463 -10.89007 -10.66233 -10.48206 -10.18239 -10.06473 -9.54748 -9.12807 -9.01664 -8.38303 -7.54166 -5.98648 -4.02742 1.29326 2.07679 2.11680 3.34238 3.41147 3.46160 3.87519 4.01070 4.11322 4.27717 4.37911 4.48054 4.51725 4.54036 4.77203 4.88175 4.99743 5.15879 5.17827 5.21371 5.26838 5.35594 5.38683 5.46055 5.51563 5.55816 5.72912 5.83094 5.88835 5.95048 6.11635 6.30429 6.44502 6.60763 7.13593 7.47982 7.61045 7.97536 8.13313 8.29037 8.47945 8.94133 9.11128 9.61782 11.09452 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.003143 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.088298 B = 8906.073041 C = 9200.358155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.154 4.154 4 C -0.129 4.129 5 C 0.122 3.878 6 N -0.365 5.365 7 C 0.082 3.918 8 C -0.083 4.083 9 C 0.585 3.415 10 O -0.541 6.541 11 N -0.584 5.584 12 C 0.090 3.910 13 C 0.245 3.755 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.896 5.896 18 Si 0.898 3.102 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 N -0.202 5.202 23 N -0.079 5.079 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.201 0.799 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.234 17.682 -13.901 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.211 4.211 4 C -0.168 4.168 5 C 0.000 4.000 6 N -0.151 5.151 7 C -0.074 4.074 8 C -0.223 4.223 9 C 0.369 3.631 10 O -0.418 6.418 11 N -0.314 5.314 12 C -0.054 4.054 13 C 0.126 3.874 14 C -0.561 4.561 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.535 5.535 18 Si 0.726 3.274 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.210 1.210 22 N -0.076 5.076 23 N -0.059 5.059 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.218 0.782 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.452 18.202 -13.297 25.752 hybrid contribution -0.016 -1.551 -0.701 1.702 sum -12.468 16.651 -13.999 25.073 Atomic orbital electron populations 1.21823 0.94559 1.02062 1.02070 1.21061 0.96417 0.96378 0.97357 1.21950 1.01069 0.95789 1.02266 1.21973 0.92669 1.02316 0.99793 1.22105 0.96305 0.98403 0.83139 1.50470 1.35202 1.20650 1.08804 1.23357 0.94309 0.89486 1.00277 1.21930 1.08349 1.01695 0.90311 1.16784 0.81145 0.81980 0.83176 1.90772 1.45333 1.49638 1.56069 1.47995 1.41427 1.36653 1.05340 1.21789 0.94530 0.94950 0.94106 1.19372 0.89385 0.84000 0.94640 1.21473 0.99482 0.92808 1.42317 0.92328 1.24937 0.94914 0.99068 0.95274 1.69948 1.11037 1.29189 1.43352 0.86432 0.79870 0.83561 0.77502 1.19810 1.20915 1.20998 1.74844 1.05646 1.01048 1.26019 1.81904 1.21762 1.19590 0.82655 0.92404 0.92418 0.92506 0.90791 0.92484 0.92429 0.92239 0.90907 0.89908 0.88496 0.87995 0.78178 0.93430 0.91183 0.91301 0.93802 0.94600 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.19 37.16 0.34 -0.44 16 2 C -0.09 -0.47 2.92 -90.62 -0.26 -0.74 16 3 C -0.15 -0.73 8.95 37.16 0.33 -0.39 16 4 C -0.13 -0.88 4.89 -26.73 -0.13 -1.01 16 5 C 0.12 0.87 6.30 -4.04 -0.03 0.84 16 6 N -0.37 -4.37 3.69 -61.06 -0.23 -4.60 16 7 C 0.08 1.13 11.28 -16.84 -0.19 0.94 16 8 C -0.08 -1.51 6.62 -83.55 -0.55 -2.06 16 9 C 0.59 13.22 7.65 -12.47 -0.10 13.13 16 10 O -0.54 -13.83 16.51 5.28 0.09 -13.75 16 11 N -0.58 -13.60 2.86 -184.19 -0.53 -14.12 16 12 C 0.09 1.73 9.27 59.85 0.55 2.28 16 13 C 0.24 6.66 5.10 -5.19 -0.03 6.64 16 14 C -0.52 -15.24 9.39 -34.44 -0.32 -15.56 16 15 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 18 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 N -0.20 -3.51 9.06 32.85 0.30 -3.21 16 23 N -0.08 -1.20 13.65 60.35 0.82 -0.37 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.24 6.57 -51.93 -0.34 -0.10 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.58 6.57 -51.93 -0.34 0.24 16 34 H 0.10 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.20 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.05 0.84 8.12 -51.93 -0.42 0.41 16 37 H 0.07 1.28 5.92 -51.93 -0.31 0.98 16 38 H 0.07 1.30 8.03 -51.93 -0.42 0.88 16 39 H 0.04 1.31 7.50 -51.93 -0.39 0.92 16 40 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -34.66 345.07 -5.51 -40.17 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -6.41 Total: -5.55 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -0.48 Total: 5.27 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 1.11 Total: -48.59 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.66 -5.51 -40.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151316525.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.390 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds