Wall clock time and date at job start Fri Apr 10 2020 17:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46769 * 2 1 4 4 C 1.52996 * 109.47179 * 120.00110 * 2 1 3 5 5 C 1.53005 * 109.46811 * 174.99742 * 4 2 1 6 6 N 1.46505 * 109.46777 * 180.02562 * 5 4 2 7 7 C 1.34811 * 126.59466 * 125.27613 * 6 5 4 8 8 C 1.36597 * 106.83915 * 180.14652 * 7 6 5 9 9 C 1.47528 * 125.76960 * 179.89652 * 8 7 6 10 10 O 1.21593 * 119.99789 * 5.98767 * 9 8 7 11 11 N 1.34772 * 120.00016 * 185.98686 * 9 8 7 12 12 C 1.46500 * 119.99895 * 5.39684 * 11 9 8 13 13 C 1.46500 * 120.00047 * 185.39683 * 11 9 8 14 14 C 1.50701 * 109.46785 * 269.99948 * 13 11 9 15 15 H 1.07992 * 120.00211 * 0.02562 * 14 13 11 16 16 C 1.37878 * 119.99630 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99988 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00089 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46780 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47116 * 119.99937 * 18 16 14 21 21 H 1.48499 * 109.46940 * 239.99853 * 18 16 14 22 22 N 1.34393 * 108.45930 * 359.63627 * 8 7 6 23 23 N 1.28765 * 109.52622 * 0.22300 * 22 8 7 24 24 H 1.08998 * 109.47054 * 299.99528 * 1 2 3 25 25 H 1.08998 * 109.47550 * 59.99804 * 1 2 3 26 26 H 1.08996 * 109.47285 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47054 * 240.00472 * 2 1 3 28 28 H 1.09006 * 109.46911 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47727 * 300.00177 * 3 2 1 30 30 H 1.08998 * 109.47444 * 60.00584 * 3 2 1 31 31 H 1.08999 * 109.47361 * 55.00434 * 4 2 1 32 32 H 1.08996 * 109.47290 * 295.00134 * 4 2 1 33 33 H 1.09000 * 109.46516 * 60.00772 * 5 4 2 34 34 H 1.08996 * 109.47514 * 300.00255 * 5 4 2 35 35 H 1.08001 * 126.57869 * 0.02562 * 7 6 5 36 36 H 1.09002 * 109.46761 * 275.36949 * 12 11 9 37 37 H 1.09002 * 109.47163 * 35.36596 * 12 11 9 38 38 H 1.08996 * 109.47132 * 155.36977 * 12 11 9 39 39 H 1.09006 * 109.46917 * 29.99926 * 13 11 9 40 40 H 1.08997 * 109.46775 * 149.99876 * 13 11 9 41 41 H 0.97008 * 119.99976 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1878 6 7 4.0532 -1.5223 2.3837 7 6 4.8355 -2.6197 2.4145 8 6 5.0418 -2.9218 3.7306 9 6 5.8413 -4.0517 4.2410 10 8 6.4743 -4.7462 3.4692 11 7 5.8701 -4.3142 5.5626 12 6 5.0168 -3.5540 6.4791 13 6 6.7548 -5.3597 6.0826 14 6 6.0234 -6.6773 6.0930 15 1 5.0019 -6.7306 5.7465 16 6 6.6587 -7.8148 6.5439 17 7 7.9031 -7.7502 6.9645 18 14 5.7523 -9.4482 6.5562 19 1 4.3749 -9.2538 6.0366 20 1 6.4735 -10.4209 5.6966 21 1 5.6880 -9.9681 7.9457 22 7 4.3980 -2.0122 4.4819 23 7 3.8007 -1.1666 3.7163 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -1.7198 1.2951 32 1 1.7516 -0.1584 2.1369 33 1 3.9994 0.1675 1.1420 34 1 3.8532 -1.3939 0.3001 35 1 5.2230 -3.1580 1.5622 36 1 5.5156 -2.6243 6.7531 37 1 4.0694 -3.3274 5.9899 38 1 4.8305 -4.1445 7.3761 39 1 7.6368 -5.4387 5.4469 40 1 7.0601 -5.1055 7.0976 41 1 8.3500 -8.5505 7.2821 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151316525.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:07 Heat of formation + Delta-G solvation = 30.386800 kcal Electronic energy + Delta-G solvation = -21495.075527 eV Core-core repulsion = 18218.330217 eV Total energy + Delta-G solvation = -3276.745309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.21923 -40.30180 -38.11878 -36.67011 -35.25119 -34.61342 -32.08886 -30.65551 -29.46866 -28.01223 -27.43365 -25.77997 -25.38804 -23.42865 -22.73833 -20.98419 -20.45078 -18.70220 -18.44512 -17.30739 -17.25219 -17.04485 -16.41379 -16.19407 -15.70220 -15.55154 -15.00946 -14.76143 -14.54818 -14.28664 -13.94600 -13.74806 -13.59172 -13.37531 -13.20783 -13.10276 -12.89705 -12.76539 -12.59357 -12.36558 -12.23158 -12.05918 -11.87867 -11.69041 -11.65783 -11.52018 -11.10302 -10.92434 -10.62814 -10.28876 -9.43769 -8.20578 -6.35185 0.17807 0.70973 1.13373 1.38819 1.40588 1.53291 2.22298 2.38000 2.44394 3.08607 3.23580 3.34831 3.76080 3.78401 3.95405 4.02679 4.03314 4.27494 4.34936 4.44749 4.49290 4.59270 4.75518 4.76226 4.82459 4.90542 4.99179 5.00176 5.05953 5.08919 5.12572 5.21478 5.31159 5.42722 5.48701 5.53583 5.57160 5.82233 6.06308 6.62692 6.73502 6.93297 7.24581 7.39885 8.86951 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.003143 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.088298 B = 8906.073041 C = 9200.358155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.154 4.154 4 C -0.124 4.124 5 C 0.110 3.890 6 N -0.346 5.346 7 C 0.107 3.893 8 C -0.117 4.117 9 C 0.582 3.418 10 O -0.582 6.582 11 N -0.596 5.596 12 C 0.096 3.904 13 C 0.260 3.740 14 C -0.541 4.541 15 H 0.051 0.949 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.970 3.030 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.269 1.269 22 N -0.218 5.218 23 N -0.085 5.085 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.138 0.862 35 H 0.232 0.768 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.006 0.994 40 H 0.028 0.972 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.683 18.263 -15.632 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C -0.211 4.211 4 C -0.163 4.163 5 C -0.009 4.009 6 N -0.131 5.131 7 C -0.051 4.051 8 C -0.257 4.257 9 C 0.369 3.631 10 O -0.462 6.462 11 N -0.326 5.326 12 C -0.046 4.046 13 C 0.139 3.861 14 C -0.580 4.580 15 H 0.069 0.931 16 C -0.191 4.191 17 N -0.567 5.567 18 Si 0.794 3.206 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.194 1.194 22 N -0.092 5.092 23 N -0.065 5.065 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.134 0.866 34 H 0.156 0.844 35 H 0.249 0.751 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.024 0.976 40 H 0.046 0.954 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.942 18.844 -15.028 27.844 hybrid contribution 0.395 -1.596 -0.264 1.665 sum -13.547 17.248 -15.291 26.737 Atomic orbital electron populations 1.21844 0.94880 1.01859 1.02153 1.21029 0.96102 0.96528 0.96871 1.21961 1.01557 0.95419 1.02203 1.21920 0.92429 1.01781 1.00126 1.22681 0.96423 0.99593 0.82174 1.50779 1.33557 1.19700 1.09027 1.23708 0.92760 0.89111 0.99485 1.21377 1.10457 1.01729 0.92118 1.17298 0.80778 0.82596 0.82442 1.90724 1.47154 1.51491 1.56880 1.48001 1.41598 1.36368 1.06586 1.21875 0.94486 0.94908 0.93364 1.18890 0.88894 0.85006 0.93323 1.21674 0.99317 0.94093 1.42892 0.93106 1.25856 0.95756 1.02944 0.94501 1.70057 1.12454 1.30576 1.43643 0.85328 0.78520 0.78507 0.78196 1.19355 1.20357 1.19438 1.74784 1.06110 1.01315 1.26987 1.81819 1.21440 1.19182 0.84079 0.93129 0.91583 0.92865 0.89262 0.91691 0.91771 0.93111 0.91808 0.91543 0.86642 0.84450 0.75139 0.91885 0.90099 0.91415 0.97567 0.95447 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.19 71.98 0.66 -0.65 16 2 C -0.09 -0.64 2.92 -10.80 -0.03 -0.67 16 3 C -0.15 -1.05 8.95 71.98 0.64 -0.41 16 4 C -0.12 -1.40 4.89 30.59 0.15 -1.25 16 5 C 0.11 1.17 6.30 86.38 0.54 1.71 16 6 N -0.35 -7.35 3.69 -347.09 -1.28 -8.63 16 7 C 0.11 2.73 11.28 83.85 0.95 3.68 16 8 C -0.12 -4.18 6.62 40.82 0.27 -3.91 16 9 C 0.58 26.87 7.65 86.69 0.66 27.53 16 10 O -0.58 -30.66 16.51 -4.01 -0.07 -30.73 16 11 N -0.60 -28.56 2.86 -854.93 -2.44 -31.01 16 12 C 0.10 3.73 9.27 127.77 1.18 4.91 16 13 C 0.26 14.73 5.10 85.63 0.44 15.17 16 14 C -0.54 -32.37 9.39 25.60 0.24 -32.13 16 15 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 16 C 0.01 0.49 5.46 84.65 0.46 0.95 16 17 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 18 Si 0.97 45.79 29.54 68.60 2.03 47.82 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 N -0.22 -7.40 9.06 -49.99 -0.45 -7.86 16 23 N -0.08 -2.43 13.65 37.02 0.51 -1.92 16 24 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.34 6.57 -2.38 -0.02 0.33 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.12 0.92 6.57 -2.39 -0.02 0.91 16 34 H 0.14 0.60 8.08 -2.39 -0.02 0.58 16 35 H 0.23 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.06 2.22 8.12 -2.39 -0.02 2.20 16 37 H 0.08 2.96 5.92 -2.39 -0.01 2.95 16 38 H 0.07 2.59 8.03 -2.39 -0.02 2.57 16 39 H 0.01 0.39 7.50 -2.38 -0.02 0.38 16 40 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 41 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -77.12 345.07 5.75 -71.37 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: 1.01 Total: 2.58 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 6.17 Total: 14.94 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -3.39 Total: -105.98 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.07 Total: -30.73 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -77.12 5.75 -71.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151316525.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.757 kcal (2) G-P(sol) polarization free energy of solvation -77.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds