Wall clock time and date at job start Fri Apr 10 2020 17:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.46965 * 2 1 4 4 N 1.46506 * 109.47331 * 179.97438 * 3 2 1 5 5 C 1.35849 * 126.05917 * 124.99573 * 4 3 2 6 6 C 1.35732 * 107.56178 * 180.02562 * 5 4 3 7 7 N 1.40844 * 126.07403 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00215 * 179.97438 * 7 6 5 9 9 O 1.21604 * 119.99870 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00366 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00192 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46890 * 34.99857 * 11 10 8 13 13 C 1.50697 * 109.47059 * 154.99829 * 11 10 8 14 14 H 1.08000 * 119.99940 * 4.73965 * 13 11 10 15 15 C 1.37885 * 119.99776 * 184.73474 * 13 11 10 16 16 N 1.31513 * 119.99768 * 187.26381 * 15 13 11 17 17 Si 1.86799 * 120.00162 * 7.26083 * 15 13 11 18 18 H 1.48494 * 109.47195 * 270.00388 * 17 15 13 19 19 H 1.48503 * 109.46898 * 30.00130 * 17 15 13 20 20 H 1.48493 * 109.47154 * 149.99868 * 17 15 13 21 21 C 1.52996 * 109.47187 * 275.00001 * 11 10 8 22 22 C 1.53002 * 109.47143 * 65.40277 * 21 11 10 23 23 C 1.40231 * 107.84884 * 0.24272 * 6 5 4 24 24 N 1.30841 * 108.34306 * 359.58919 * 23 6 5 25 25 H 1.09000 * 109.47169 * 60.00233 * 1 2 3 26 26 H 1.09009 * 109.47276 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47539 * 300.00119 * 1 2 3 28 28 H 1.09003 * 109.47539 * 239.99880 * 2 1 3 29 29 H 1.09000 * 109.47169 * 119.99767 * 2 1 3 30 30 H 1.08995 * 109.47390 * 60.00198 * 3 2 1 31 31 H 1.08997 * 109.47714 * 299.99315 * 3 2 1 32 32 H 1.07993 * 126.21723 * 0.06269 * 5 4 3 33 33 H 0.96998 * 120.00123 * 0.02562 * 7 6 5 34 34 H 0.96998 * 119.99972 * 0.02562 * 10 8 7 35 35 H 0.97003 * 120.00316 * 354.94376 * 16 15 13 36 36 H 1.08996 * 109.47512 * 185.40376 * 21 11 10 37 37 H 1.09001 * 109.47266 * 305.40612 * 21 11 10 38 38 H 1.08999 * 109.47492 * 300.00450 * 22 21 11 39 39 H 1.09005 * 109.47250 * 60.00012 * 22 21 11 40 40 H 1.08995 * 109.47287 * 180.02562 * 22 21 11 41 41 H 1.08005 * 125.82649 * 179.76384 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3049 2.0723 -0.8988 6 6 5.5920 1.8250 -0.5458 7 7 6.7399 2.2926 -1.2146 8 6 7.9654 1.9714 -0.7550 9 8 8.0801 1.2774 0.2369 10 7 9.0638 2.4184 -1.3953 11 6 10.3960 2.0687 -0.8959 12 1 10.3758 1.0605 -0.4823 13 6 11.3883 2.1273 -2.0285 14 1 11.0755 2.4716 -3.0033 15 6 12.6956 1.7416 -1.8204 16 7 13.5937 1.9259 -2.7633 17 14 13.1912 0.9573 -0.1990 18 1 13.6125 2.0152 0.7542 19 1 12.0357 0.2144 0.3651 20 1 14.3191 0.0189 -0.4274 21 6 10.8080 3.0593 0.1949 22 6 9.8797 2.9047 1.4012 23 6 5.5757 1.0161 0.5996 24 7 4.3291 0.7928 0.9283 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9765 2.6629 -1.7412 33 1 6.6484 2.8466 -2.0056 34 1 8.9724 2.9717 -2.1867 35 1 13.3233 2.2649 -3.6310 36 1 11.8353 2.8585 0.4989 37 1 10.7356 4.0760 -0.1913 38 1 8.8524 3.1055 1.0973 39 1 9.9521 1.8880 1.7875 40 1 10.1729 3.6107 2.1782 41 1 6.4439 0.6435 1.1228 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156129784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:23 Heat of formation + Delta-G solvation = 16.909072 kcal Electronic energy + Delta-G solvation = -21818.225476 eV Core-core repulsion = 18540.895728 eV Total energy + Delta-G solvation = -3277.329748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.28518 -40.84636 -37.45100 -36.27739 -35.31356 -34.42413 -33.00553 -32.25776 -30.09752 -28.89019 -26.81490 -24.32394 -23.48339 -22.97789 -22.02311 -21.49731 -21.21312 -19.96519 -18.65663 -18.37847 -17.23268 -16.85229 -16.29992 -16.20647 -15.67831 -15.43593 -15.27722 -14.88623 -14.53508 -14.35322 -14.17042 -14.01893 -13.74768 -13.67905 -13.18283 -12.86067 -12.70878 -12.45941 -12.32564 -12.26989 -11.93101 -11.71107 -11.64217 -11.52499 -11.38556 -11.02233 -10.88142 -10.63007 -10.30075 -9.82766 -8.77477 -8.55120 -6.43956 0.87602 1.43996 1.47248 1.53860 1.69190 1.71456 1.98817 2.42189 2.51722 3.05794 3.48162 3.64391 3.95807 3.99398 4.16662 4.33547 4.34773 4.42267 4.43947 4.53147 4.56989 4.66837 4.72926 4.86883 4.90542 5.10294 5.14659 5.18439 5.21944 5.26938 5.34094 5.39037 5.58945 5.64402 5.72595 5.89993 6.02670 6.14970 6.24982 6.55541 6.72742 7.27007 7.31395 7.74050 8.63765 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.039674 B = 0.003308 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.573914 B = 8462.369935 C = 8633.709152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.133 3.867 4 N -0.370 5.370 5 C 0.030 3.970 6 C 0.003 3.997 7 N -0.650 5.650 8 C 0.697 3.303 9 O -0.613 6.613 10 N -0.714 5.714 11 C 0.266 3.734 12 H 0.026 0.974 13 C -0.602 4.602 14 H 0.042 0.958 15 C -0.009 4.009 16 N -0.936 5.936 17 Si 1.078 2.922 18 H -0.257 1.257 19 H -0.265 1.265 20 H -0.289 1.289 21 C -0.134 4.134 22 C -0.131 4.131 23 C 0.027 3.973 24 N -0.314 5.314 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.222 0.778 33 H 0.420 0.580 34 H 0.401 0.599 35 H 0.258 0.742 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.040 0.960 40 H 0.055 0.945 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.863 2.870 2.796 26.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.014 3.986 4 N -0.156 5.156 5 C -0.118 4.118 6 C -0.102 4.102 7 N -0.300 5.300 8 C 0.397 3.603 9 O -0.493 6.493 10 N -0.367 5.367 11 C 0.161 3.839 12 H 0.043 0.957 13 C -0.640 4.640 14 H 0.060 0.940 15 C -0.209 4.209 16 N -0.572 5.572 17 Si 0.902 3.098 18 H -0.183 1.183 19 H -0.190 1.190 20 H -0.215 1.215 21 C -0.173 4.173 22 C -0.189 4.189 23 C -0.159 4.159 24 N -0.138 5.138 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.150 0.850 32 H 0.238 0.762 33 H 0.257 0.743 34 H 0.235 0.765 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -25.326 1.128 5.326 25.904 hybrid contribution -0.187 1.358 -2.551 2.896 sum -25.513 2.486 2.774 25.784 Atomic orbital electron populations 1.21674 0.92546 1.02787 1.03140 1.21759 0.97825 0.95468 1.02181 1.22127 0.71584 0.99102 1.05833 1.48789 1.07204 1.39158 1.20445 1.22426 0.88003 1.02652 0.98727 1.17721 0.86607 1.07056 0.98801 1.41672 1.01500 1.55060 1.31760 1.16023 0.80725 0.80548 0.82992 1.90755 1.85792 1.44247 1.28525 1.45139 1.04583 1.55337 1.31609 1.18774 0.78619 0.94048 0.92496 0.95661 1.22366 0.96652 1.47980 0.97010 0.93951 1.26792 0.92897 0.94692 1.06519 1.70936 1.35867 1.45085 1.05340 0.83567 0.76446 0.77255 0.72580 1.18272 1.18968 1.21514 1.22169 0.98541 1.00470 0.96147 1.21735 0.99290 1.00575 0.97253 1.24315 0.95153 0.99298 0.97180 1.77262 1.01267 1.20162 1.15100 0.90804 0.92158 0.91702 0.92338 0.92935 0.89129 0.85034 0.76174 0.74293 0.76502 0.93311 0.93069 0.92157 0.93288 0.94131 0.92646 0.80238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.91 71.98 0.71 -0.42 16 2 C -0.13 -1.80 6.12 30.59 0.19 -1.61 16 3 C 0.13 1.62 6.52 86.38 0.56 2.18 16 4 N -0.37 -7.96 3.71 -346.98 -1.29 -9.25 16 5 C 0.03 0.59 11.52 83.49 0.96 1.56 16 6 C 0.00 0.09 6.90 37.59 0.26 0.35 16 7 N -0.65 -18.13 5.48 -317.71 -1.74 -19.87 16 8 C 0.70 26.03 7.12 179.06 1.28 27.30 16 9 O -0.61 -26.86 10.63 -4.04 -0.04 -26.90 16 10 N -0.71 -27.75 5.03 -461.40 -2.32 -30.07 16 11 C 0.27 12.51 1.81 44.24 0.08 12.59 16 12 H 0.03 1.34 6.07 -2.39 -0.01 1.32 16 13 C -0.60 -32.53 9.09 25.60 0.23 -32.30 16 14 H 0.04 2.40 7.95 -2.91 -0.02 2.38 16 15 C -0.01 -0.53 5.42 84.66 0.46 -0.07 16 16 N -0.94 -56.88 13.70 21.45 0.29 -56.59 16 17 Si 1.08 51.27 25.39 68.60 1.74 53.01 16 18 H -0.26 -11.25 6.73 99.48 0.67 -10.58 16 19 H -0.26 -12.22 6.38 99.48 0.63 -11.58 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 21 C -0.13 -5.80 5.20 30.59 0.16 -5.64 16 22 C -0.13 -5.14 8.52 71.98 0.61 -4.52 16 23 C 0.03 0.90 10.84 85.33 0.92 1.83 16 24 N -0.31 -9.61 12.41 -56.78 -0.70 -10.31 16 25 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.13 0.62 8.07 -2.39 -0.02 0.61 16 32 H 0.22 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.42 8.31 8.84 -92.71 -0.82 7.49 16 34 H 0.40 13.51 8.54 -92.71 -0.79 12.72 16 35 H 0.26 15.63 8.72 -92.71 -0.81 14.82 16 36 H 0.05 2.28 4.43 -2.39 -0.01 2.27 16 37 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.05 1.93 5.64 -2.39 -0.01 1.92 16 39 H 0.04 1.67 7.87 -2.38 -0.02 1.66 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.18 7.03 5.91 -2.91 -0.02 7.01 16 Total: -1.00 -73.01 330.77 1.67 -71.35 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.70 Total: 27.38 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 6.43 Total: 1.25 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -5.76 Total: -126.09 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.04 Total: -26.90 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 1.74 Total: 53.01 kcal Total: -73.01 1.67 -71.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156129784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.254 kcal (2) G-P(sol) polarization free energy of solvation -73.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds