Wall clock time and date at job start Fri Apr 10 2020 17:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47117 * 2 1 4 4 N 1.46497 * 109.46728 * 120.00001 * 2 1 3 5 5 N 1.40069 * 126.04756 * 300.13053 * 4 2 1 6 6 C 1.30841 * 108.37569 * 180.31236 * 5 4 2 7 7 C 1.39770 * 108.31980 * 359.74830 * 6 5 4 8 8 C 1.35251 * 126.04490 * 120.00179 * 4 2 1 9 9 N 1.39503 * 126.21377 * 359.96188 * 8 4 2 10 10 C 1.34777 * 119.99669 * 179.97438 * 9 8 4 11 11 O 1.21583 * 120.00270 * 359.71694 * 10 9 8 12 12 N 1.34775 * 119.99585 * 179.71829 * 10 9 8 13 13 C 1.46507 * 119.99876 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46968 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.46837 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47362 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99305 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00190 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99542 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00085 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47180 * 90.00070 * 20 18 16 22 22 H 1.48503 * 109.46903 * 210.00050 * 20 18 16 23 23 H 1.48498 * 109.47152 * 329.99815 * 20 18 16 24 24 H 1.09001 * 109.47707 * 300.00075 * 1 2 3 25 25 H 1.09000 * 109.47022 * 60.00217 * 1 2 3 26 26 H 1.09005 * 109.47585 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47112 * 239.99910 * 2 1 3 28 28 H 1.09001 * 109.46953 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46997 * 299.99798 * 3 2 1 30 30 H 1.09001 * 109.47347 * 59.99708 * 3 2 1 31 31 H 1.08001 * 125.84141 * 179.72497 * 6 5 4 32 32 H 1.07997 * 126.08824 * 179.97438 * 7 6 5 33 33 H 0.97001 * 119.99784 * 359.70584 * 9 8 4 34 34 H 0.97000 * 120.00523 * 0.02562 * 12 10 9 35 35 H 1.08998 * 109.47039 * 300.00042 * 13 12 10 36 36 H 1.08994 * 109.46660 * 60.00264 * 13 12 10 37 37 H 1.08998 * 109.46943 * 299.99694 * 14 13 12 38 38 H 1.08994 * 109.47116 * 60.00083 * 14 13 12 39 39 H 1.08996 * 109.47756 * 299.99976 * 15 14 13 40 40 H 1.09008 * 109.47349 * 59.99909 * 15 14 13 41 41 H 0.96999 * 119.99467 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 7 1.7569 -0.3256 2.5230 6 6 2.3659 -1.1737 3.3116 7 6 3.0316 -2.1118 2.5177 8 6 2.7990 -1.7948 1.2146 9 7 3.2831 -2.4807 0.1005 10 6 4.0559 -3.5726 0.2647 11 8 4.3354 -3.9568 1.3838 12 7 4.5189 -4.2384 -0.8117 13 6 5.3595 -5.4251 -0.6332 14 6 5.7470 -5.9862 -2.0029 15 6 6.6243 -7.2257 -1.8165 16 6 7.0055 -7.7788 -3.1655 17 1 6.6573 -7.2944 -4.0657 18 6 7.7998 -8.9027 -3.2504 19 7 8.1328 -9.3850 -4.4277 20 14 8.4026 -9.7401 -1.6933 21 1 7.4194 -10.7704 -1.2729 22 1 9.7145 -10.3852 -1.9544 23 1 8.5534 -8.7305 -0.6148 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.3562 -1.1522 4.3914 32 1 3.6251 -2.9405 2.8746 33 1 3.0603 -2.1739 -0.7924 34 1 4.2963 -3.9317 -1.7046 35 1 6.2609 -5.1526 -0.0843 36 1 4.8077 -6.1803 -0.0737 37 1 4.8458 -6.2586 -2.5521 38 1 6.2990 -5.2307 -2.5621 39 1 7.5255 -6.9538 -1.2670 40 1 6.0719 -7.9811 -1.2574 41 1 8.6913 -10.1759 -4.4874 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171724689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:40 Heat of formation + Delta-G solvation = 41.697935 kcal Electronic energy + Delta-G solvation = -21183.286559 eV Core-core repulsion = 17907.031737 eV Total energy + Delta-G solvation = -3276.254822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.68239 -39.89960 -36.01812 -35.89517 -34.84933 -33.39900 -31.54864 -30.27513 -28.94006 -27.72644 -27.06634 -23.46903 -23.25742 -21.93509 -20.87540 -20.28485 -20.00558 -18.50656 -17.76678 -16.74637 -16.09442 -15.76516 -15.23809 -15.12014 -14.76900 -14.43758 -14.30174 -13.97616 -13.91403 -13.28653 -13.18655 -12.73785 -12.65978 -12.43377 -12.20228 -11.98628 -11.81326 -11.71317 -11.16408 -11.13861 -10.90949 -10.80694 -10.21929 -10.05584 -9.88571 -9.74496 -9.27339 -9.17310 -9.03910 -8.58843 -8.10559 -6.09734 -4.08874 1.72032 1.80510 2.64488 2.77231 3.20619 3.29359 3.37226 3.41050 3.91972 4.04441 4.41581 4.45566 4.50464 4.78651 5.08845 5.10294 5.18089 5.24432 5.29393 5.32993 5.45873 5.50209 5.58823 5.71300 5.71810 5.86432 5.93501 6.06352 6.21742 6.37652 6.53122 6.66916 6.71702 6.75956 6.97737 7.17661 7.31112 7.58521 7.71606 7.80209 8.35798 8.46269 8.93657 9.52379 11.03445 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034874 B = 0.002714 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.689386 B =10312.630619 C =10913.648192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.157 3.843 3 C -0.160 4.160 4 N -0.386 5.386 5 N -0.295 5.295 6 C 0.058 3.942 7 C -0.282 4.282 8 C 0.327 3.673 9 N -0.666 5.666 10 C 0.709 3.291 11 O -0.559 6.559 12 N -0.731 5.731 13 C 0.132 3.868 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.523 4.523 17 H 0.072 0.928 18 C 0.067 3.933 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.264 1.264 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.184 0.816 32 H 0.174 0.826 33 H 0.403 0.597 34 H 0.397 0.603 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.020 0.980 40 H 0.015 0.985 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.314 20.396 8.720 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.055 3.945 3 C -0.218 4.218 4 N -0.175 5.175 5 N -0.117 5.117 6 C -0.128 4.128 7 C -0.314 4.314 8 C 0.107 3.893 9 N -0.316 5.316 10 C 0.408 3.592 11 O -0.434 6.434 12 N -0.386 5.386 13 C 0.009 3.991 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.561 4.561 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.188 1.188 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.201 0.799 32 H 0.191 0.809 33 H 0.238 0.762 34 H 0.231 0.769 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.667 20.903 9.432 27.222 hybrid contribution 0.664 -0.981 -0.345 1.233 sum -14.004 19.923 9.087 25.992 Atomic orbital electron populations 1.22128 0.93098 1.03053 1.03518 1.21199 0.95811 0.94026 0.83462 1.22127 1.01802 0.94339 1.03516 1.48794 1.41171 1.21372 1.06156 1.77356 1.25312 1.23890 0.85103 1.23760 0.95858 0.93086 1.00089 1.21679 1.13146 1.07457 0.89147 1.17688 0.94752 0.88248 0.88649 1.41952 1.53236 1.29210 1.07216 1.15656 0.78783 0.79152 0.85620 1.90881 1.61779 1.68110 1.22602 1.45314 1.54967 1.31248 1.07049 1.21645 0.93296 0.84316 0.99858 1.21722 1.00641 0.99397 0.93371 1.19500 0.94720 0.92457 0.98193 1.21079 1.31471 1.11611 0.91968 0.91031 1.25031 0.95617 0.96821 0.96005 1.69913 1.37386 1.23477 1.23376 0.86772 0.78350 0.80050 0.84117 1.20214 1.21363 1.18827 0.90832 0.90709 0.92085 0.89214 0.92080 0.90703 0.90837 0.79919 0.80900 0.76154 0.76877 0.91484 0.91479 0.92046 0.92018 0.96202 0.96638 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.45 37.16 0.35 -0.68 16 2 C 0.16 1.14 3.69 -67.93 -0.25 0.89 16 3 C -0.16 -1.03 9.46 37.16 0.35 -0.68 16 4 N -0.39 -4.17 3.28 -53.90 -0.18 -4.35 16 5 N -0.29 -3.57 12.42 30.60 0.38 -3.19 16 6 C 0.06 0.68 12.01 -17.40 -0.21 0.47 16 7 C -0.28 -3.83 9.65 -39.78 -0.38 -4.22 16 8 C 0.33 4.05 7.66 -153.14 -1.17 2.88 16 9 N -0.67 -7.11 5.42 -15.85 -0.09 -7.19 16 10 C 0.71 9.70 8.53 -86.92 -0.74 8.96 16 11 O -0.56 -9.70 13.47 5.29 0.07 -9.63 16 12 N -0.73 -9.04 5.56 -65.22 -0.36 -9.40 16 13 C 0.13 2.02 5.67 -4.04 -0.02 1.99 16 14 C -0.11 -1.98 5.27 -26.73 -0.14 -2.12 16 15 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 16 C -0.52 -14.39 9.66 -34.44 -0.33 -14.73 16 17 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 20 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.47 6.81 -51.93 -0.35 0.11 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.18 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.17 2.65 5.82 -52.49 -0.31 2.34 16 33 H 0.40 2.83 7.54 -40.82 -0.31 2.52 16 34 H 0.40 3.69 8.49 -40.82 -0.35 3.34 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 40 H 0.02 0.34 7.57 -51.92 -0.39 -0.05 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -33.90 342.11 -7.99 -41.90 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.32 Total: 2.38 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -2.76 Total: -5.77 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.53 Total: -50.74 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.07 Total: -9.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.90 -7.99 -41.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171724689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.594 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds