Wall clock time and date at job start Fri Apr 10 2020 17:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47289 * 2 1 4 4 C 1.39760 * 125.84196 * 125.27413 * 3 2 1 5 5 C 1.36109 * 107.82445 * 180.16369 * 4 3 2 6 6 N 1.39505 * 126.21101 * 179.84607 * 5 4 3 7 7 C 1.34773 * 120.00461 * 359.69221 * 6 5 4 8 8 O 1.21593 * 119.99894 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00097 * 179.72698 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27545 * 9 7 6 11 11 C 1.53004 * 109.46928 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46988 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46983 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99624 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00027 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00241 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99926 * 0.02562 * 15 13 12 18 18 H 1.48509 * 109.47069 * 89.99946 * 17 15 13 19 19 H 1.48502 * 109.47295 * 209.99409 * 17 15 13 20 20 H 1.48499 * 109.47159 * 330.00032 * 17 15 13 21 21 N 1.35251 * 107.57039 * 359.58030 * 5 4 3 22 22 C 1.46498 * 126.04242 * 180.23825 * 21 5 4 23 23 N 1.30843 * 125.83596 * 304.97215 * 3 2 1 24 24 H 1.09003 * 109.46760 * 59.99838 * 1 2 3 25 25 H 1.08995 * 109.47263 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47368 * 300.00599 * 1 2 3 27 27 H 1.08995 * 109.47095 * 239.99377 * 2 1 3 28 28 H 1.09004 * 109.46706 * 119.99200 * 2 1 3 29 29 H 1.07999 * 126.08711 * 0.02986 * 4 3 2 30 30 H 0.97000 * 119.99427 * 179.68740 * 6 5 4 31 31 H 0.97000 * 119.99736 * 0.26819 * 9 7 6 32 32 H 1.08992 * 109.46803 * 299.99362 * 10 9 7 33 33 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 34 34 H 1.09007 * 109.46621 * 299.99773 * 11 10 9 35 35 H 1.08997 * 109.46991 * 59.99522 * 11 10 9 36 36 H 1.08998 * 109.46983 * 299.99930 * 12 11 10 37 37 H 1.08997 * 109.47123 * 59.99717 * 12 11 10 38 38 H 0.97003 * 119.99905 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.46553 * 90.00807 * 22 21 5 40 40 H 1.09008 * 109.46855 * 210.00389 * 22 21 5 41 41 H 1.08998 * 109.47642 * 330.00486 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9221 1.9743 0.9249 5 6 3.1215 3.2766 0.5834 6 7 3.9395 4.1879 1.2516 7 6 4.6190 3.8040 2.3504 8 8 4.5187 2.6634 2.7595 9 7 5.4136 4.6829 2.9927 10 6 6.1569 4.2639 4.1836 11 6 6.9756 5.4423 4.7146 12 6 7.7513 5.0049 5.9587 13 6 8.5582 6.1654 6.4814 14 1 8.5216 7.1194 5.9764 15 6 9.3430 6.0093 7.6041 16 7 10.0468 7.0221 8.0606 17 14 9.4067 4.3590 8.4770 18 1 10.5012 3.5365 7.9014 19 1 9.6581 4.5740 9.9247 20 1 8.1118 3.6543 8.2986 21 7 2.3872 3.5251 -0.5249 22 6 2.3087 4.8021 -1.2385 23 7 1.7146 2.3457 -0.8692 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.3697 1.4606 1.7629 30 1 4.0192 5.0979 0.9253 31 1 5.4933 5.5929 2.6664 32 1 5.4571 3.9323 4.9506 33 1 6.8267 3.4442 3.9240 34 1 7.6754 5.7735 3.9473 35 1 6.3060 6.2623 4.9740 36 1 7.0512 4.6739 6.7257 37 1 8.4209 4.1847 5.6996 38 1 10.5986 6.9123 8.8507 39 1 3.0832 4.8383 -2.0045 40 1 1.3292 4.8967 -1.7074 41 1 2.4551 5.6214 -0.5346 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172161960.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:42 Heat of formation + Delta-G solvation = 38.056129 kcal Electronic energy + Delta-G solvation = -20971.424632 eV Core-core repulsion = 17695.011890 eV Total energy + Delta-G solvation = -3276.412742 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.68302 -39.91991 -36.00134 -35.36610 -34.21151 -33.39377 -31.95436 -31.51153 -29.05346 -27.13191 -26.83381 -23.75724 -23.36492 -21.83834 -20.81936 -20.24151 -19.99105 -18.14184 -17.56119 -16.73007 -16.25659 -15.85638 -15.48436 -14.95889 -14.43872 -14.36552 -14.31803 -14.11637 -13.94281 -13.67352 -13.07133 -12.78593 -12.73952 -12.38657 -12.10257 -11.98804 -11.63158 -11.46045 -11.14959 -11.02044 -10.88241 -10.69641 -10.21370 -10.05835 -9.88937 -9.74749 -9.27522 -9.11551 -8.94329 -8.59003 -8.12611 -6.09784 -4.08981 1.67999 1.80923 2.67002 2.68699 3.18518 3.29232 3.37128 3.40914 3.92825 4.20876 4.41450 4.64542 4.79280 4.87686 5.03023 5.14235 5.24318 5.27939 5.33664 5.42963 5.49375 5.58458 5.70653 5.80822 5.92764 5.93223 5.98958 6.08061 6.21938 6.37327 6.52471 6.67171 6.70803 6.75421 6.94904 7.17429 7.30878 7.58361 7.71372 7.79208 8.34900 8.46084 8.93513 9.52273 11.03327 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.002662 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.441632 B =10516.893772 C =11288.431266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C 0.089 3.911 4 C -0.277 4.277 5 C 0.329 3.671 6 N -0.665 5.665 7 C 0.708 3.292 8 O -0.559 6.559 9 N -0.731 5.731 10 C 0.132 3.868 11 C -0.113 4.113 12 C -0.011 4.011 13 C -0.523 4.523 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.264 1.264 21 N -0.395 5.395 22 C 0.101 3.899 23 N -0.295 5.295 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.175 0.825 30 H 0.405 0.595 31 H 0.398 0.602 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.264 0.736 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.132 -6.953 -18.836 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 C -0.077 4.077 4 C -0.309 4.309 5 C 0.109 3.891 6 N -0.315 5.315 7 C 0.408 3.592 8 O -0.434 6.434 9 N -0.385 5.385 10 C 0.009 3.991 11 C -0.151 4.151 12 C -0.049 4.049 13 C -0.561 4.561 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.541 5.541 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.188 1.188 21 N -0.183 5.183 22 C -0.040 4.040 23 N -0.118 5.118 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.192 0.808 30 H 0.240 0.760 31 H 0.231 0.769 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.692 -7.499 -19.327 27.254 hybrid contribution 0.810 0.363 0.855 1.232 sum -16.882 -7.136 -18.472 26.022 Atomic orbital electron populations 1.21706 0.94515 1.01667 1.02413 1.19971 0.96137 0.88634 1.03349 1.22196 0.96183 0.96201 0.93153 1.21568 1.09444 0.92546 1.07358 1.17645 0.92376 0.90847 0.88267 1.41935 1.47123 1.13626 1.28854 1.15661 0.79089 0.85277 0.79210 1.90883 1.67372 1.17904 1.67207 1.45312 1.48089 1.13764 1.31377 1.21647 0.94291 0.98929 0.84253 1.21725 0.98074 0.95769 0.99562 1.19501 0.95318 0.97500 0.92560 1.21074 1.25822 0.97565 1.11659 0.91032 1.25030 0.94931 0.96638 0.96894 1.69909 1.29153 1.30927 1.24135 0.86773 0.79129 0.84550 0.78832 1.20218 1.21365 1.18831 1.48387 1.37605 1.10727 1.21619 1.21774 1.04615 0.80589 0.97052 1.77348 1.20153 0.90685 1.23626 0.92244 0.92253 0.92640 0.90298 0.89734 0.80798 0.76034 0.76854 0.91473 0.91480 0.92039 0.92020 0.96198 0.96638 0.92661 0.90838 0.88914 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.87 37.16 0.37 -0.84 16 2 C -0.04 -0.39 6.51 -27.88 -0.18 -0.57 16 3 C 0.09 1.13 6.48 -82.44 -0.53 0.59 16 4 C -0.28 -3.94 9.57 -39.78 -0.38 -4.32 16 5 C 0.33 4.17 7.66 -153.14 -1.17 2.99 16 6 N -0.67 -7.09 5.42 -15.84 -0.09 -7.18 16 7 C 0.71 9.71 8.53 -86.92 -0.74 8.97 16 8 O -0.56 -9.73 13.47 5.28 0.07 -9.66 16 9 N -0.73 -9.01 5.56 -65.22 -0.36 -9.37 16 10 C 0.13 2.01 5.67 -4.04 -0.02 1.99 16 11 C -0.11 -1.97 5.27 -26.73 -0.14 -2.11 16 12 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 13 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16 14 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 15 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 17 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 21 N -0.40 -4.43 4.02 -67.17 -0.27 -4.70 16 22 C 0.10 0.63 11.28 59.85 0.68 1.31 16 23 N -0.29 -3.81 12.53 33.65 0.42 -3.38 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 29 H 0.17 2.74 5.82 -52.49 -0.31 2.44 16 30 H 0.40 2.72 7.98 -40.82 -0.33 2.40 16 31 H 0.40 3.66 8.49 -40.82 -0.35 3.31 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 37 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.51 8.14 -51.92 -0.42 0.08 16 41 H 0.08 0.31 7.50 -51.93 -0.39 -0.08 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -34.61 343.59 -7.99 -42.60 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.37 Total: 1.65 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.68 Total: -5.26 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.48 Total: -51.20 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.66 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.61 -7.99 -42.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172161960.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.653 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds