Wall clock time and date at job start Fri Apr 10 2020 17:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47289 * 2 1 4 4 C 1.39760 * 125.84196 * 125.27413 * 3 2 1 5 5 C 1.36109 * 107.82445 * 180.16369 * 4 3 2 6 6 N 1.39505 * 126.21101 * 179.84607 * 5 4 3 7 7 C 1.34773 * 120.00461 * 359.69221 * 6 5 4 8 8 O 1.21593 * 119.99894 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00097 * 179.72698 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27545 * 9 7 6 11 11 C 1.53004 * 109.46928 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46988 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46983 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99624 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00027 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00241 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99926 * 0.02562 * 15 13 12 18 18 H 1.48509 * 109.47069 * 89.99946 * 17 15 13 19 19 H 1.48502 * 109.47295 * 209.99409 * 17 15 13 20 20 H 1.48499 * 109.47159 * 330.00032 * 17 15 13 21 21 N 1.35251 * 107.57039 * 359.58030 * 5 4 3 22 22 C 1.46498 * 126.04242 * 180.23825 * 21 5 4 23 23 N 1.30843 * 125.83596 * 304.97215 * 3 2 1 24 24 H 1.09003 * 109.46760 * 59.99838 * 1 2 3 25 25 H 1.08995 * 109.47263 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47368 * 300.00599 * 1 2 3 27 27 H 1.08995 * 109.47095 * 239.99377 * 2 1 3 28 28 H 1.09004 * 109.46706 * 119.99200 * 2 1 3 29 29 H 1.07999 * 126.08711 * 0.02986 * 4 3 2 30 30 H 0.97000 * 119.99427 * 179.68740 * 6 5 4 31 31 H 0.97000 * 119.99736 * 0.26819 * 9 7 6 32 32 H 1.08992 * 109.46803 * 299.99362 * 10 9 7 33 33 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 34 34 H 1.09007 * 109.46621 * 299.99773 * 11 10 9 35 35 H 1.08997 * 109.46991 * 59.99522 * 11 10 9 36 36 H 1.08998 * 109.46983 * 299.99930 * 12 11 10 37 37 H 1.08997 * 109.47123 * 59.99717 * 12 11 10 38 38 H 0.97003 * 119.99905 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.46553 * 90.00807 * 22 21 5 40 40 H 1.09008 * 109.46855 * 210.00389 * 22 21 5 41 41 H 1.08998 * 109.47642 * 330.00486 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9221 1.9743 0.9249 5 6 3.1215 3.2766 0.5834 6 7 3.9395 4.1879 1.2516 7 6 4.6190 3.8040 2.3504 8 8 4.5187 2.6634 2.7595 9 7 5.4136 4.6829 2.9927 10 6 6.1569 4.2639 4.1836 11 6 6.9756 5.4423 4.7146 12 6 7.7513 5.0049 5.9587 13 6 8.5582 6.1654 6.4814 14 1 8.5216 7.1194 5.9764 15 6 9.3430 6.0093 7.6041 16 7 10.0468 7.0221 8.0606 17 14 9.4067 4.3590 8.4770 18 1 10.5012 3.5365 7.9014 19 1 9.6581 4.5740 9.9247 20 1 8.1118 3.6543 8.2986 21 7 2.3872 3.5251 -0.5249 22 6 2.3087 4.8021 -1.2385 23 7 1.7146 2.3457 -0.8692 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.3697 1.4606 1.7629 30 1 4.0192 5.0979 0.9253 31 1 5.4933 5.5929 2.6664 32 1 5.4571 3.9323 4.9506 33 1 6.8267 3.4442 3.9240 34 1 7.6754 5.7735 3.9473 35 1 6.3060 6.2623 4.9740 36 1 7.0512 4.6739 6.7257 37 1 8.4209 4.1847 5.6996 38 1 10.5986 6.9123 8.8507 39 1 3.0832 4.8383 -2.0045 40 1 1.3292 4.8967 -1.7074 41 1 2.4551 5.6214 -0.5346 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172161960.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:42 Heat of formation + Delta-G solvation = 14.122585 kcal Electronic energy + Delta-G solvation = -20972.462468 eV Core-core repulsion = 17695.011890 eV Total energy + Delta-G solvation = -3277.450579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.61438 -40.97738 -37.24839 -36.38357 -35.22544 -35.03714 -33.28284 -32.62866 -30.16282 -28.66207 -27.56583 -24.96557 -24.43325 -22.97730 -22.25492 -21.25173 -21.10101 -19.18529 -18.89148 -18.32625 -17.23894 -16.94813 -16.50943 -16.30706 -15.80101 -15.61872 -15.30419 -15.05107 -14.89148 -14.75947 -14.48026 -13.85925 -13.78066 -13.64174 -13.38171 -13.02791 -12.72804 -12.69148 -12.33728 -12.25372 -11.96439 -11.83618 -11.77468 -11.57811 -11.52497 -11.30575 -11.15993 -10.74433 -10.24655 -9.78464 -9.10805 -8.27819 -6.31498 0.73350 0.87601 1.38905 1.40817 1.52177 1.69165 1.85835 2.14233 2.38003 2.99648 3.08395 3.50546 3.91694 4.08845 4.23720 4.24198 4.36891 4.44803 4.47828 4.53066 4.60656 4.63469 4.66004 4.86775 4.92228 4.94388 5.03623 5.08221 5.11070 5.21180 5.34568 5.39981 5.51630 5.58954 5.66371 5.72160 5.82439 6.04915 6.28985 6.66244 6.76992 6.88497 7.31939 7.33521 8.88425 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.002662 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.441632 B =10516.893772 C =11288.431266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 C 0.083 3.917 4 C -0.309 4.309 5 C 0.325 3.675 6 N -0.645 5.645 7 C 0.708 3.292 8 O -0.597 6.597 9 N -0.717 5.717 10 C 0.146 3.854 11 C -0.100 4.100 12 C -0.013 4.013 13 C -0.529 4.529 14 H 0.038 0.962 15 C 0.003 3.997 16 N -0.951 5.951 17 Si 0.946 3.054 18 H -0.268 1.268 19 H -0.287 1.287 20 H -0.246 1.246 21 N -0.390 5.390 22 C 0.088 3.912 23 N -0.312 5.312 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.154 0.846 30 H 0.425 0.575 31 H 0.415 0.585 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.265 0.735 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.203 -7.585 -19.995 28.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C -0.083 4.083 4 C -0.341 4.341 5 C 0.103 3.897 6 N -0.297 5.297 7 C 0.407 3.593 8 O -0.475 6.475 9 N -0.373 5.373 10 C 0.022 3.978 11 C -0.138 4.138 12 C -0.051 4.051 13 C -0.567 4.567 14 H 0.057 0.943 15 C -0.194 4.194 16 N -0.592 5.592 17 Si 0.770 3.230 18 H -0.193 1.193 19 H -0.213 1.213 20 H -0.169 1.169 21 N -0.178 5.178 22 C -0.051 4.051 23 N -0.136 5.136 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.171 0.829 30 H 0.264 0.736 31 H 0.252 0.748 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.789 -8.071 -20.549 28.990 hybrid contribution 1.137 0.680 1.139 1.747 sum -17.652 -7.392 -19.410 27.258 Atomic orbital electron populations 1.21655 0.93613 1.02797 1.01575 1.20102 0.96865 0.87203 1.04120 1.22582 0.95740 0.97415 0.92560 1.21549 1.10957 0.93800 1.07837 1.17653 0.92520 0.90787 0.88743 1.41580 1.46042 1.14354 1.27758 1.15725 0.79148 0.84752 0.79636 1.90881 1.68552 1.19655 1.68381 1.44960 1.47394 1.14504 1.30452 1.21271 0.93957 0.97572 0.85045 1.21481 0.98026 0.96599 0.97653 1.19474 0.95319 0.95668 0.94683 1.21471 1.25994 0.97945 1.11273 0.94333 1.25986 0.94749 1.00574 0.98048 1.70059 1.30611 1.33454 1.25069 0.85711 0.80085 0.79833 0.77359 1.19329 1.21291 1.16895 1.48712 1.36425 1.11578 1.21071 1.22223 1.05809 0.79137 0.97981 1.77290 1.20846 0.91400 1.24022 0.92867 0.90140 0.93590 0.89169 0.89266 0.82890 0.73564 0.74767 0.92086 0.92026 0.91485 0.91500 0.95965 0.96095 0.92586 0.89275 0.88036 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.87 71.98 0.71 -1.46 16 2 C -0.04 -0.80 6.51 29.85 0.19 -0.61 16 3 C 0.08 2.07 6.48 43.07 0.28 2.35 16 4 C -0.31 -8.82 9.57 22.14 0.21 -8.61 16 5 C 0.33 7.85 7.66 131.31 1.01 8.85 16 6 N -0.65 -12.46 5.42 -322.30 -1.75 -14.20 16 7 C 0.71 18.34 8.53 179.06 1.53 19.87 16 8 O -0.60 -20.59 13.47 -4.01 -0.05 -20.65 16 9 N -0.72 -16.07 5.56 -478.53 -2.66 -18.73 16 10 C 0.15 4.17 5.67 86.38 0.49 4.66 16 11 C -0.10 -3.30 5.27 30.60 0.16 -3.13 16 12 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 13 C -0.53 -29.16 9.66 25.60 0.25 -28.92 16 14 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 15 C 0.00 0.18 5.47 84.65 0.46 0.64 16 16 N -0.95 -58.65 13.96 21.44 0.30 -58.35 16 17 Si 0.95 43.58 27.47 68.60 1.88 45.46 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 21 N -0.39 -8.07 4.02 -366.44 -1.47 -9.55 16 22 C 0.09 0.85 11.28 127.77 1.44 2.29 16 23 N -0.31 -7.75 12.53 -47.45 -0.59 -8.35 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 26 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.51 8.12 -2.38 -0.02 1.49 16 29 H 0.15 5.02 5.82 -2.91 -0.02 5.00 16 30 H 0.43 4.39 7.98 -92.71 -0.74 3.65 16 31 H 0.42 6.41 8.49 -92.71 -0.79 5.62 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 37 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 38 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.11 0.44 7.50 -2.39 -0.02 0.42 16 Total: -1.00 -76.14 343.59 1.97 -74.17 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -0.54 Total: 14.71 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 6.85 Total: -4.51 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -6.18 Total: -109.19 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.05 Total: -20.65 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Total: -76.14 1.97 -74.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172161960.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.297 kcal (2) G-P(sol) polarization free energy of solvation -76.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds