Wall clock time and date at job start Fri Apr 10 2020 17:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46656 * 2 1 4 4 H 1.08998 * 109.47159 * 55.00124 * 3 2 1 5 5 C 1.53005 * 109.47061 * 174.99805 * 3 2 1 6 6 N 1.46494 * 109.47457 * 294.99944 * 3 2 1 7 7 C 1.46499 * 119.99906 * 300.00352 * 6 3 2 8 8 C 1.34780 * 120.00323 * 119.99915 * 6 3 2 9 9 O 1.21596 * 119.99503 * 0.02562 * 8 6 3 10 10 N 1.34768 * 120.00282 * 179.97438 * 8 6 3 11 11 C 1.40201 * 120.00133 * 180.02562 * 10 8 6 12 12 C 1.40397 * 125.97169 * 359.97438 * 11 10 8 13 13 C 1.35243 * 107.86884 * 179.97438 * 12 11 10 14 14 N 1.34962 * 107.85356 * 0.24300 * 13 12 11 15 15 C 1.46501 * 125.97057 * 179.71745 * 14 13 12 16 16 C 1.50708 * 109.46751 * 125.00134 * 15 14 13 17 17 H 1.07997 * 120.00026 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00051 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00345 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00160 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47317 * 90.00059 * 20 18 16 22 22 H 1.48504 * 109.47530 * 209.99982 * 20 18 16 23 23 H 1.48503 * 109.47395 * 330.00322 * 20 18 16 24 24 N 1.31203 * 125.97162 * 179.97438 * 11 10 8 25 25 H 1.08998 * 109.47500 * 299.99532 * 1 2 3 26 26 H 1.08997 * 109.47384 * 59.99862 * 1 2 3 27 27 H 1.08999 * 109.46900 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47500 * 240.00468 * 2 1 3 29 29 H 1.08997 * 109.47109 * 119.99662 * 2 1 3 30 30 H 1.08997 * 109.47034 * 300.00603 * 5 3 2 31 31 H 1.08998 * 109.46874 * 60.00144 * 5 3 2 32 32 H 1.08999 * 109.47325 * 180.02562 * 5 3 2 33 33 H 1.09002 * 109.47175 * 269.99547 * 7 6 3 34 34 H 1.08997 * 109.47705 * 29.99846 * 7 6 3 35 35 H 1.09002 * 109.47292 * 150.00011 * 7 6 3 36 36 H 0.96998 * 120.00068 * 0.02562 * 10 8 6 37 37 H 1.08003 * 126.06781 * 359.95711 * 12 11 10 38 38 H 1.08002 * 126.06857 * 179.97438 * 13 12 11 39 39 H 1.08997 * 109.47534 * 244.99833 * 15 14 13 40 40 H 1.09001 * 109.47287 * 5.00944 * 15 14 13 41 41 H 0.96998 * 120.00621 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5648 1.4445 0.1258 6 7 1.6523 2.0976 -1.2517 7 6 2.1138 1.5590 -2.5336 8 6 0.8711 3.1955 -1.2241 9 8 0.4885 3.6427 -0.1601 10 7 0.5150 3.7984 -2.3756 11 6 -0.2971 4.9409 -2.3468 12 6 -0.8086 5.5602 -1.1953 13 6 -1.5403 6.6275 -1.5885 14 7 -1.5009 6.6823 -2.9364 15 6 -2.1657 7.6814 -3.7768 16 6 -1.1498 8.3372 -4.6763 17 1 -0.1129 8.0392 -4.6272 18 6 -1.5443 9.3167 -5.5627 19 7 -2.8070 9.6793 -5.6230 20 14 -0.2852 10.1291 -6.6782 21 1 -0.1855 9.3676 -7.9491 22 1 -0.7071 11.5231 -6.9682 23 1 1.0379 10.1424 -6.0041 24 7 -0.7120 5.6180 -3.3912 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8531 0.9571 1.0571 31 1 3.9994 0.9055 -0.7160 32 1 3.9280 2.4722 0.1262 33 1 3.0652 2.0196 -2.7999 34 1 2.2435 0.4801 -2.4490 35 1 1.3761 1.7768 -3.3059 36 1 0.8206 3.4419 -3.2244 37 1 -0.6467 5.2409 -0.1764 38 1 -2.0665 7.3117 -0.9393 39 1 -2.9289 7.1953 -4.3845 40 1 -2.6316 8.4366 -3.1438 41 1 -3.0847 10.3682 -6.2468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173341518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:20:45 Heat of formation + Delta-G solvation = 54.633776 kcal Electronic energy + Delta-G solvation = -21877.837078 eV Core-core repulsion = 18602.143196 eV Total energy + Delta-G solvation = -3275.693882 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.82206 -39.82946 -37.03259 -34.78591 -33.57511 -32.81342 -30.82069 -30.03826 -29.22015 -27.20173 -26.53492 -24.15616 -23.15149 -22.05767 -20.59149 -19.87843 -19.14070 -18.03578 -16.65636 -16.51630 -16.13173 -15.91063 -15.02794 -14.42386 -14.29137 -14.03639 -13.93013 -13.77557 -13.50064 -13.20644 -12.79732 -12.76629 -12.40644 -12.28456 -12.12417 -11.88713 -11.73765 -11.37318 -11.21300 -11.01289 -10.91431 -10.86132 -10.38486 -10.23633 -10.00471 -9.60619 -9.45885 -8.80734 -8.61203 -8.05731 -7.36817 -6.22289 -4.27234 2.38137 2.70134 3.14725 3.24916 3.30583 3.35560 3.47799 3.88021 4.15139 4.34890 4.51857 4.79726 4.82420 4.87962 5.12705 5.18008 5.19277 5.27703 5.37230 5.42459 5.52994 5.59410 5.70139 5.75998 5.85066 5.92040 5.96012 6.10896 6.24769 6.41690 6.58569 6.71773 6.87959 7.01026 7.12124 7.53822 7.71767 7.83401 7.98301 8.10401 8.63158 8.70211 8.83616 9.38276 10.86395 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.031289 B = 0.003380 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.659247 B = 8283.015586 C = 8706.464415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.151 3.849 4 H 0.105 0.895 5 C -0.162 4.162 6 N -0.624 5.624 7 C 0.073 3.927 8 C 0.715 3.285 9 O -0.567 6.567 10 N -0.644 5.644 11 C 0.275 3.725 12 C -0.286 4.286 13 C 0.051 3.949 14 N -0.321 5.321 15 C 0.259 3.741 16 C -0.527 4.527 17 H 0.069 0.931 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.908 3.092 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 N -0.309 5.309 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.406 0.594 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.283 -18.360 9.477 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C 0.048 3.952 4 H 0.123 0.877 5 C -0.220 4.220 6 N -0.362 5.362 7 C -0.070 4.070 8 C 0.416 3.584 9 O -0.443 6.443 10 N -0.295 5.295 11 C 0.021 3.979 12 C -0.317 4.317 13 C -0.099 4.099 14 N -0.103 5.103 15 C 0.141 3.859 16 C -0.566 4.566 17 H 0.087 0.913 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 N -0.140 5.140 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.242 0.758 37 H 0.178 0.822 38 H 0.184 0.816 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.830 -17.729 8.814 21.679 hybrid contribution 0.749 0.268 -0.440 0.909 sum 9.579 -17.461 8.374 21.605 Atomic orbital electron populations 1.21705 0.95232 1.01146 1.02575 1.21916 0.96856 0.96065 1.02310 1.21033 0.94625 0.92907 0.86660 0.87694 1.22154 0.95176 1.02590 1.02068 1.47001 1.53320 1.28522 1.07362 1.21745 0.99942 1.00256 0.85063 1.15559 0.79135 0.80056 0.83620 1.90842 1.58925 1.65567 1.28923 1.41575 1.51959 1.27396 1.08569 1.18813 0.96283 0.89440 0.93367 1.21510 1.09918 1.00514 0.99781 1.22548 1.01643 0.99698 0.86052 1.49041 1.35833 1.20821 1.04582 1.19725 0.92693 0.83554 0.89905 1.21271 0.95104 1.20048 1.20168 0.91309 1.24944 0.95747 0.96409 0.97007 1.69918 1.15256 1.31011 1.37249 0.86329 0.81199 0.78341 0.80628 1.20362 1.20999 1.19723 1.77310 1.14940 1.01755 1.19983 0.92419 0.92715 0.92995 0.91741 0.90827 0.91427 0.92437 0.92085 0.92427 0.90501 0.91399 0.75780 0.82212 0.81562 0.93785 0.92556 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.80 37.16 0.36 -1.00 16 2 C -0.13 -1.00 5.36 -26.73 -0.14 -1.14 16 3 C 0.15 1.43 2.64 -67.93 -0.18 1.25 16 4 H 0.11 1.23 6.90 -51.93 -0.36 0.87 16 5 C -0.16 -1.21 9.19 37.16 0.34 -0.87 16 6 N -0.62 -6.87 2.21 -179.67 -0.40 -7.26 16 7 C 0.07 0.57 9.26 59.85 0.55 1.12 16 8 C 0.72 11.06 8.25 -86.92 -0.72 10.35 16 9 O -0.57 -10.47 12.80 5.28 0.07 -10.40 16 10 N -0.64 -10.57 5.32 -15.51 -0.08 -10.65 16 11 C 0.27 5.71 8.11 -154.36 -1.25 4.46 16 12 C -0.29 -5.87 9.61 -39.84 -0.38 -6.25 16 13 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 14 N -0.32 -7.61 3.67 -62.56 -0.23 -7.84 16 15 C 0.26 6.66 6.26 -5.19 -0.03 6.63 16 16 C -0.53 -14.83 9.23 -34.44 -0.32 -15.15 16 17 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.90 -25.53 13.29 55.43 0.74 -24.79 16 20 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 N -0.31 -7.26 12.42 31.44 0.39 -6.87 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.60 7.75 -51.93 -0.40 0.19 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.42 6.47 -51.93 -0.34 0.08 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.44 6.34 -51.93 -0.33 0.11 16 35 H 0.07 0.51 6.36 -51.93 -0.33 0.18 16 36 H 0.41 5.56 6.55 -40.82 -0.27 5.29 16 37 H 0.16 3.22 5.91 -52.48 -0.31 2.91 16 38 H 0.17 2.79 8.06 -52.49 -0.42 2.37 16 39 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 41 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -32.70 338.37 -7.57 -40.28 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.08 Total: 4.11 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.06 Total: 1.85 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.42 Total: -57.41 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.70 -7.57 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173341518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.910 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds