Wall clock time and date at job start Fri Apr 10 2020 17:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 125.89613 * 2 1 4 4 C 1.35314 * 107.91954 * 180.14407 * 3 2 1 5 5 C 1.50703 * 126.12759 * 179.90471 * 4 3 2 6 6 N 1.34949 * 107.74826 * 359.63758 * 4 3 2 7 7 C 1.46492 * 126.04227 * 180.20931 * 6 4 3 8 8 C 1.50701 * 109.47276 * 89.99694 * 7 6 4 9 9 O 1.21278 * 119.99813 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00011 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99647 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.47272 * 324.99517 * 11 10 8 13 13 C 1.52997 * 109.47188 * 85.00241 * 11 10 8 14 14 C 1.53004 * 109.46584 * 204.99613 * 11 10 8 15 15 N 1.46501 * 109.47055 * 55.00794 * 14 11 10 16 16 C 1.36938 * 120.00080 * 180.02562 * 15 14 11 17 17 H 1.08006 * 119.99832 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99996 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00215 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99772 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47553 * 60.00392 * 20 18 16 22 22 H 1.48507 * 109.47183 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47267 * 299.99859 * 20 18 16 24 24 N 1.30835 * 125.89924 * 179.73974 * 2 1 3 25 25 H 1.08996 * 109.47154 * 270.23207 * 1 2 3 26 26 H 1.09001 * 109.47360 * 30.23828 * 1 2 3 27 27 H 1.08999 * 109.46997 * 150.23794 * 1 2 3 28 28 H 1.08000 * 126.03890 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.47152 * 269.68517 * 5 4 3 30 30 H 1.09001 * 109.46980 * 149.68618 * 5 4 3 31 31 H 1.09004 * 109.47113 * 29.68598 * 5 4 3 32 32 H 1.09001 * 109.47504 * 210.00369 * 7 6 4 33 33 H 1.09010 * 109.47188 * 330.00050 * 7 6 4 34 34 H 0.96997 * 120.00400 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.47111 * 179.97438 * 13 11 10 36 36 H 1.09005 * 109.46962 * 299.99853 * 13 11 10 37 37 H 1.09009 * 109.47350 * 59.99607 * 13 11 10 38 38 H 1.09000 * 109.46705 * 174.99837 * 14 11 10 39 39 H 1.08999 * 109.47276 * 295.00097 * 14 11 10 40 40 H 0.96997 * 119.99868 * 359.97438 * 15 14 11 41 41 H 0.96993 * 120.00023 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 3.6088 -0.6340 0.0029 7 6 4.7899 -1.5006 0.0065 8 6 5.1955 -1.7913 1.4285 9 8 4.5601 -1.3212 2.3484 10 7 6.2642 -2.5736 1.6779 11 6 6.6581 -2.8566 3.0604 12 1 6.4642 -1.9811 3.6799 13 6 5.8501 -4.0439 3.5880 14 6 8.1497 -3.1940 3.1067 15 7 8.9156 -2.1068 2.4921 16 6 10.2806 -2.1874 2.4183 17 1 10.7926 -3.0524 2.8136 18 6 11.0062 -1.1576 1.8354 19 7 10.3822 -0.1038 1.3532 20 14 12.8683 -1.2673 1.7355 21 1 13.2520 -2.4666 0.9483 22 1 13.4011 -0.0492 1.0740 23 1 13.4321 -1.3729 3.1052 24 7 2.2742 -1.0598 0.0048 25 1 -0.3633 0.0042 1.0276 26 1 -0.3634 0.8878 -0.5175 27 1 -0.3633 -0.8921 -0.5101 28 1 1.9922 2.1598 0.0004 29 1 5.1300 1.8074 -1.0349 30 1 5.6508 1.0934 0.5102 31 1 4.6072 2.5354 0.5030 32 1 4.5563 -2.4354 -0.5031 33 1 5.6093 -1.0003 -0.5100 34 1 6.7726 -2.9493 0.9422 35 1 6.1435 -4.2547 4.6164 36 1 4.7874 -3.8036 3.5549 37 1 6.0441 -4.9195 2.9684 38 1 8.4622 -3.3174 4.1436 39 1 8.3300 -4.1197 2.5602 40 1 8.4557 -1.3302 2.1367 41 1 10.8893 0.6160 0.9463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754274991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:18:07 Heat of formation + Delta-G solvation = 19.862143 kcal Electronic energy + Delta-G solvation = -21934.977499 eV Core-core repulsion = 18657.775806 eV Total energy + Delta-G solvation = -3277.201693 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.32596 -40.76430 -37.78210 -35.49304 -35.06904 -33.30814 -32.85007 -31.73917 -30.40521 -27.94358 -27.46371 -26.93538 -24.54621 -22.74202 -21.62589 -21.33904 -20.25775 -19.25415 -18.48470 -17.87286 -16.94975 -16.71625 -16.37027 -16.00979 -15.39884 -15.27979 -14.95622 -14.75144 -14.66803 -14.11265 -14.01803 -13.83914 -13.69934 -13.67596 -13.33036 -13.13674 -13.10075 -13.04121 -12.75729 -12.71893 -12.66047 -12.20463 -11.92168 -11.72956 -11.47883 -11.22536 -10.94710 -10.14794 -10.01123 -9.43253 -9.01111 -7.94106 -5.23367 0.80496 1.40430 1.47949 1.49803 1.51588 1.57508 1.85189 2.23456 2.56598 3.40064 3.53039 3.60154 3.71342 3.81974 4.02260 4.04645 4.06768 4.22937 4.26294 4.48383 4.51727 4.65488 4.74360 4.76315 4.82371 4.84140 4.91273 4.94003 4.99189 5.06525 5.08759 5.25408 5.32266 5.48652 5.52368 5.79768 6.02041 6.26785 6.47655 6.78226 7.13088 7.34665 8.06535 8.31387 9.28464 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021389 B = 0.004013 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.742889 B = 6976.131375 C = 8012.718367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.062 3.938 3 C -0.288 4.288 4 C 0.087 3.913 5 C -0.092 4.092 6 N -0.366 5.366 7 C 0.114 3.886 8 C 0.498 3.502 9 O -0.575 6.575 10 N -0.700 5.700 11 C 0.142 3.858 12 H 0.056 0.944 13 C -0.146 4.146 14 C 0.147 3.853 15 N -0.742 5.742 16 C -0.247 4.247 17 H 0.077 0.923 18 C -0.069 4.069 19 N -0.964 5.964 20 Si 0.971 3.029 21 H -0.276 1.276 22 H -0.297 1.297 23 H -0.283 1.283 24 N -0.330 5.330 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.168 0.832 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.414 0.586 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.044 0.956 40 H 0.375 0.625 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.939 -1.906 -5.065 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C -0.316 4.316 4 C -0.040 4.040 5 C -0.151 4.151 6 N -0.147 5.147 7 C -0.011 4.011 8 C 0.283 3.717 9 O -0.454 6.454 10 N -0.352 5.352 11 C 0.037 3.963 12 H 0.074 0.926 13 C -0.205 4.205 14 C 0.020 3.980 15 N -0.386 5.386 16 C -0.379 4.379 17 H 0.095 0.905 18 C -0.262 4.262 19 N -0.615 5.615 20 Si 0.800 3.200 21 H -0.202 1.202 22 H -0.224 1.224 23 H -0.209 1.209 24 N -0.152 5.152 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.093 0.907 28 H 0.185 0.815 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.251 0.749 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.207 0.793 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.050 -3.034 -4.368 15.961 hybrid contribution 1.335 1.083 -0.215 1.732 sum -13.715 -1.951 -4.583 14.591 Atomic orbital electron populations 1.20274 0.84258 1.04383 1.03580 1.22974 0.98562 0.90611 0.98332 1.21428 0.90720 1.00690 1.18808 1.21613 0.98605 0.84467 0.99289 1.20544 0.91754 0.98259 1.04504 1.47999 1.04638 1.04302 1.57808 1.21639 0.86542 0.98585 0.94368 1.21194 0.80427 0.78115 0.91951 1.90711 1.54503 1.52762 1.47420 1.45860 1.29458 1.50322 1.09523 1.21080 0.94125 0.98475 0.82575 0.92561 1.21997 0.98939 0.97133 1.02400 1.21109 0.88192 0.91626 0.97043 1.42494 1.03357 1.21302 1.71438 1.19572 0.84250 1.02821 1.31231 0.90476 1.25495 1.02053 0.96750 1.01912 1.69791 1.35765 1.09616 1.46282 0.85259 0.80612 0.76568 0.77544 1.20190 1.22375 1.20923 1.77191 0.86777 1.24140 1.27138 0.90113 0.88132 0.90742 0.81470 0.87937 0.92618 0.88344 0.83589 0.83718 0.74938 0.90159 0.93631 0.90535 0.94570 0.93834 0.79279 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.45 71.24 0.74 -0.47 16 2 C 0.06 1.71 7.22 43.10 0.31 2.02 16 3 C -0.29 -7.66 10.65 21.99 0.23 -7.43 16 4 C 0.09 2.49 6.93 41.41 0.29 2.78 16 5 C -0.09 -2.20 9.90 71.24 0.71 -1.49 16 6 N -0.37 -11.23 3.10 -338.40 -1.05 -12.28 16 7 C 0.11 2.95 6.54 85.63 0.56 3.51 16 8 C 0.50 16.26 7.86 87.66 0.69 16.95 16 9 O -0.57 -23.96 16.09 -3.02 -0.05 -24.01 16 10 N -0.70 -21.08 4.52 -442.53 -2.00 -23.07 16 11 C 0.14 4.64 2.73 44.99 0.12 4.77 16 12 H 0.06 2.19 7.58 -2.39 -0.02 2.17 16 13 C -0.15 -3.83 9.48 71.98 0.68 -3.15 16 14 C 0.15 5.35 5.82 86.38 0.50 5.86 16 15 N -0.74 -35.14 5.43 -343.44 -1.87 -37.01 16 16 C -0.25 -13.02 9.99 84.03 0.84 -12.18 16 17 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 18 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 19 N -0.96 -56.08 13.06 21.65 0.28 -55.80 16 20 Si 0.97 44.24 29.55 68.60 2.03 46.26 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 N -0.33 -10.79 12.58 -47.38 -0.60 -11.38 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.55 7.72 -2.39 -0.02 1.53 16 31 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.15 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.15 3.11 7.66 -2.38 -0.02 3.09 16 34 H 0.41 10.99 8.60 -92.71 -0.80 10.19 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.37 19.13 7.33 -92.71 -0.68 18.45 16 41 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -73.55 351.39 2.45 -71.09 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: -0.44 Total: 38.36 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 6.15 Total: 7.84 kcal Atomic # 7 Polarization: -134.32 SS G_CDS: -5.23 Total: -139.54 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -73.55 2.45 -71.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754274991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.954 kcal (2) G-P(sol) polarization free energy of solvation -73.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds