Wall clock time and date at job start Fri Apr 10 2020 17:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30862 * 125.41772 * 2 1 4 4 C 1.33315 * 109.68467 * 179.74271 * 3 2 1 5 5 C 1.50704 * 126.10540 * 180.27498 * 4 3 2 6 6 C 1.36664 * 107.78745 * 0.37224 * 4 3 2 7 7 C 1.46762 * 126.84140 * 179.89419 * 6 4 3 8 8 O 1.21682 * 120.00268 * 6.72877 * 7 6 4 9 9 N 1.34779 * 119.99666 * 186.72026 * 7 6 4 10 10 C 1.46498 * 119.99896 * 6.22028 * 9 7 6 11 11 C 1.46501 * 119.99914 * 186.21221 * 9 7 6 12 12 C 1.53004 * 109.47477 * 270.00379 * 11 9 7 13 13 C 1.52998 * 109.47028 * 180.02562 * 12 11 9 14 14 N 1.46505 * 109.47034 * 180.02562 * 13 12 11 15 15 C 1.36930 * 120.00420 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99772 * 359.97438 * 15 14 13 17 17 C 1.38803 * 120.00283 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00051 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46984 * 89.99866 * 19 17 15 21 21 H 1.48501 * 109.47304 * 209.99835 * 19 17 15 22 22 H 1.48497 * 109.46900 * 330.00277 * 19 17 15 23 23 N 1.34498 * 125.42226 * 179.97438 * 2 1 3 24 24 H 0.96995 * 126.47068 * 0.02562 * 23 2 1 25 25 H 1.08997 * 109.47226 * 270.02443 * 1 2 3 26 26 H 1.08995 * 109.47362 * 30.03202 * 1 2 3 27 27 H 1.09001 * 109.46696 * 150.02739 * 1 2 3 28 28 H 1.09003 * 109.47057 * 270.11837 * 5 4 3 29 29 H 1.08996 * 109.47175 * 30.11458 * 5 4 3 30 30 H 1.09001 * 109.47336 * 150.12059 * 5 4 3 31 31 H 1.08998 * 109.46804 * 275.81503 * 10 9 7 32 32 H 1.09001 * 109.47440 * 35.82236 * 10 9 7 33 33 H 1.09003 * 109.47158 * 155.82316 * 10 9 7 34 34 H 1.09003 * 109.47031 * 150.00630 * 11 9 7 35 35 H 1.08999 * 109.46993 * 30.00698 * 11 9 7 36 36 H 1.08995 * 109.46784 * 300.00235 * 12 11 9 37 37 H 1.09003 * 109.46785 * 60.00101 * 12 11 9 38 38 H 1.08999 * 109.47164 * 300.00149 * 13 12 11 39 39 H 1.08993 * 109.47228 * 60.00284 * 13 12 11 40 40 H 0.96999 * 119.99411 * 359.97438 * 14 13 12 41 41 H 0.97006 * 120.00159 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5485 0.7050 0.0056 5 6 4.7334 1.6361 0.0134 6 6 3.5975 -0.6608 0.0009 7 6 4.8029 -1.4981 0.0022 8 8 5.8992 -0.9862 0.1315 9 7 4.6954 -2.8341 -0.1395 10 6 3.3926 -3.4373 -0.4309 11 6 5.8815 -3.6830 -0.0024 12 6 6.5506 -3.8491 -1.3684 13 6 7.7889 -4.7361 -1.2252 14 7 8.4299 -4.8947 -2.5330 15 6 9.5638 -5.6531 -2.6524 16 1 9.9858 -6.1341 -1.7823 17 6 10.1713 -5.8028 -3.8914 18 7 9.6574 -5.2162 -4.9516 19 14 11.7186 -6.8369 -4.0541 20 1 11.3449 -8.2445 -4.3444 21 1 12.5534 -6.3076 -5.1623 22 1 12.4872 -6.7806 -2.7848 23 7 2.2865 -1.0960 0.0005 24 1 1.9850 -2.0180 0.0006 25 1 -0.3633 0.0004 1.0276 26 1 -0.3634 0.8896 -0.5143 27 1 -0.3633 -0.8903 -0.5134 28 1 5.0229 1.8644 -1.0124 29 1 4.4673 2.5585 0.5295 30 1 5.5672 1.1590 0.5285 31 1 2.8440 -3.5842 0.4995 32 1 2.8251 -2.7773 -1.0871 33 1 3.5393 -4.3994 -0.9219 34 1 5.5865 -4.6606 0.3789 35 1 6.5823 -3.2187 0.6914 36 1 5.8497 -4.3133 -2.0621 37 1 6.8456 -2.8714 -1.7497 38 1 8.4899 -4.2723 -0.5312 39 1 7.4935 -5.7136 -0.8441 40 1 8.0506 -4.4630 -3.3144 41 1 10.0818 -5.3212 -5.8175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754396197.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:18:12 Heat of formation + Delta-G solvation = 39.979192 kcal Electronic energy + Delta-G solvation = -21536.807829 eV Core-core repulsion = 18260.478477 eV Total energy + Delta-G solvation = -3276.329352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.61427 -39.61480 -36.40003 -35.04040 -33.57643 -32.77473 -31.88525 -29.84571 -29.34493 -27.70692 -26.70128 -24.91854 -23.02939 -21.59778 -21.32640 -20.78172 -19.61342 -17.72941 -17.05089 -16.49277 -16.26611 -16.18600 -15.10289 -14.64386 -14.49123 -14.26712 -13.92939 -13.59870 -13.30287 -13.29484 -13.17858 -13.08717 -12.80801 -12.70294 -12.45567 -12.17597 -12.00051 -11.94326 -10.93900 -10.84833 -10.75667 -10.53227 -10.43163 -10.19890 -10.07775 -9.89559 -9.70336 -8.92450 -8.85042 -8.50881 -6.89846 -5.73844 -3.02751 1.07698 2.51956 2.54955 2.84170 3.17747 3.45244 3.50101 3.52417 3.96156 4.30123 4.51001 4.61427 4.62566 4.78617 4.86414 5.01970 5.06058 5.12620 5.22940 5.35263 5.40911 5.51827 5.58342 5.64386 5.74031 5.83074 5.87439 6.00093 6.05021 6.28379 6.38141 6.42760 6.44605 6.85921 6.87743 6.91448 7.13758 7.69610 7.71879 7.99338 8.44971 9.55781 10.14241 10.48786 11.49236 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032635 B = 0.002910 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.763538 B = 9620.565141 C = 9893.980942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.233 3.767 3 N -0.496 5.496 4 C 0.100 3.900 5 C -0.080 4.080 6 C -0.091 4.091 7 C 0.593 3.407 8 O -0.512 6.512 9 N -0.615 5.615 10 C 0.062 3.938 11 C 0.122 3.878 12 C -0.140 4.140 13 C 0.157 3.843 14 N -0.734 5.734 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 N -0.558 5.558 24 H 0.423 0.577 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.021 0.979 39 H 0.018 0.982 40 H 0.383 0.617 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.021 7.771 12.314 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.031 4.031 3 N -0.217 5.217 4 C -0.034 4.034 5 C -0.138 4.138 6 C -0.206 4.206 7 C 0.381 3.619 8 O -0.387 6.387 9 N -0.348 5.348 10 C -0.082 4.082 11 C 0.000 4.000 12 C -0.179 4.179 13 C 0.029 3.971 14 N -0.378 5.378 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.212 4.212 18 N -0.583 5.583 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 N -0.171 5.171 24 H 0.269 0.731 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.217 0.783 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.523 8.714 12.433 26.339 hybrid contribution 0.644 -1.882 -0.556 2.065 sum -20.879 6.833 11.878 24.974 Atomic orbital electron populations 1.20294 0.84275 1.04563 1.03996 1.23448 0.95873 0.81889 1.01896 1.70086 1.01677 1.28433 1.21497 1.21106 0.93147 0.90289 0.98866 1.20340 0.93102 0.97088 1.03271 1.20895 0.83756 0.95400 1.20516 1.16890 0.86955 0.81113 0.76944 1.90849 1.26109 1.72238 1.49507 1.47767 1.09513 1.06141 1.71424 1.22086 0.85323 1.00560 1.00223 1.21559 0.85939 0.93677 0.98823 1.22072 0.98161 1.01576 0.96088 1.20533 0.91424 0.95288 0.89883 1.42353 1.30347 1.60625 1.04439 1.19243 1.01491 1.22455 0.93824 0.91143 1.24759 0.99597 1.01125 0.95669 1.69668 1.41715 1.48009 0.98920 0.86167 0.82931 0.79783 0.77191 1.21749 1.21738 1.20722 1.44098 1.06059 1.10544 1.56365 0.73104 0.89633 0.88628 0.90451 0.90626 0.91051 0.88950 0.92512 0.91394 0.89039 0.90286 0.89465 0.92096 0.91249 0.96120 0.96465 0.78316 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.51 36.00 0.38 0.04 16 2 C 0.23 2.18 8.12 -155.61 -1.26 0.91 16 3 N -0.50 -6.29 11.20 -6.85 -0.08 -6.36 16 4 C 0.10 1.35 7.14 -82.52 -0.59 0.76 16 5 C -0.08 -0.99 9.95 36.01 0.36 -0.64 16 6 C -0.09 -1.15 6.63 -82.15 -0.54 -1.69 16 7 C 0.59 8.50 7.62 -12.81 -0.10 8.40 16 8 O -0.51 -9.00 14.44 5.20 0.08 -8.92 16 9 N -0.62 -7.37 2.87 -183.09 -0.53 -7.89 16 10 C 0.06 0.46 8.81 59.85 0.53 0.99 16 11 C 0.12 1.62 5.33 -4.04 -0.02 1.60 16 12 C -0.14 -2.37 5.65 -26.73 -0.15 -2.52 16 13 C 0.16 3.25 6.26 -4.04 -0.03 3.22 16 14 N -0.73 -19.45 5.60 -59.91 -0.34 -19.78 16 15 C -0.24 -6.92 9.99 -15.07 -0.15 -7.07 16 16 H 0.07 1.97 7.83 -52.48 -0.41 1.55 16 17 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -29.05 13.06 55.49 0.72 -28.33 16 19 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 N -0.56 -4.98 5.14 -7.02 -0.04 -5.02 16 24 H 0.42 2.40 5.10 -40.82 -0.21 2.20 16 25 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.24 6.37 -51.93 -0.33 0.91 16 31 H 0.06 0.28 7.51 -51.93 -0.39 -0.11 16 32 H 0.07 0.46 5.65 -51.93 -0.29 0.17 16 33 H 0.09 0.62 8.03 -51.93 -0.42 0.20 16 34 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.09 1.26 7.51 -51.93 -0.39 0.87 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.38 10.71 7.67 -40.82 -0.31 10.39 16 41 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 340.05 15.07 5.12 5.12 Total: -1.00 -36.47 340.05 -7.86 -44.33 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.11 Total: 5.56 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.68 Total: 3.45 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: -0.25 Total: -67.39 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.92 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.47 -7.86 -44.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754396197.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.309 kcal (2) G-P(sol) polarization free energy of solvation -36.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds