Wall clock time and date at job start Fri Apr 10 2020 17:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30862 * 125.41772 * 2 1 4 4 C 1.33315 * 109.68467 * 179.74271 * 3 2 1 5 5 C 1.50704 * 126.10540 * 180.27498 * 4 3 2 6 6 C 1.36664 * 107.78745 * 0.37224 * 4 3 2 7 7 C 1.46762 * 126.84140 * 179.89419 * 6 4 3 8 8 O 1.21682 * 120.00268 * 6.72877 * 7 6 4 9 9 N 1.34779 * 119.99666 * 186.72026 * 7 6 4 10 10 C 1.46498 * 119.99896 * 6.22028 * 9 7 6 11 11 C 1.46501 * 119.99914 * 186.21221 * 9 7 6 12 12 C 1.53004 * 109.47477 * 270.00379 * 11 9 7 13 13 C 1.52998 * 109.47028 * 180.02562 * 12 11 9 14 14 N 1.46505 * 109.47034 * 180.02562 * 13 12 11 15 15 C 1.36930 * 120.00420 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99772 * 359.97438 * 15 14 13 17 17 C 1.38803 * 120.00283 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00051 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46984 * 89.99866 * 19 17 15 21 21 H 1.48501 * 109.47304 * 209.99835 * 19 17 15 22 22 H 1.48497 * 109.46900 * 330.00277 * 19 17 15 23 23 N 1.34498 * 125.42226 * 179.97438 * 2 1 3 24 24 H 0.96995 * 126.47068 * 0.02562 * 23 2 1 25 25 H 1.08997 * 109.47226 * 270.02443 * 1 2 3 26 26 H 1.08995 * 109.47362 * 30.03202 * 1 2 3 27 27 H 1.09001 * 109.46696 * 150.02739 * 1 2 3 28 28 H 1.09003 * 109.47057 * 270.11837 * 5 4 3 29 29 H 1.08996 * 109.47175 * 30.11458 * 5 4 3 30 30 H 1.09001 * 109.47336 * 150.12059 * 5 4 3 31 31 H 1.08998 * 109.46804 * 275.81503 * 10 9 7 32 32 H 1.09001 * 109.47440 * 35.82236 * 10 9 7 33 33 H 1.09003 * 109.47158 * 155.82316 * 10 9 7 34 34 H 1.09003 * 109.47031 * 150.00630 * 11 9 7 35 35 H 1.08999 * 109.46993 * 30.00698 * 11 9 7 36 36 H 1.08995 * 109.46784 * 300.00235 * 12 11 9 37 37 H 1.09003 * 109.46785 * 60.00101 * 12 11 9 38 38 H 1.08999 * 109.47164 * 300.00149 * 13 12 11 39 39 H 1.08993 * 109.47228 * 60.00284 * 13 12 11 40 40 H 0.96999 * 119.99411 * 359.97438 * 14 13 12 41 41 H 0.97006 * 120.00159 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5485 0.7050 0.0056 5 6 4.7334 1.6361 0.0134 6 6 3.5975 -0.6608 0.0009 7 6 4.8029 -1.4981 0.0022 8 8 5.8992 -0.9862 0.1315 9 7 4.6954 -2.8341 -0.1395 10 6 3.3926 -3.4373 -0.4309 11 6 5.8815 -3.6830 -0.0024 12 6 6.5506 -3.8491 -1.3684 13 6 7.7889 -4.7361 -1.2252 14 7 8.4299 -4.8947 -2.5330 15 6 9.5638 -5.6531 -2.6524 16 1 9.9858 -6.1341 -1.7823 17 6 10.1713 -5.8028 -3.8914 18 7 9.6574 -5.2162 -4.9516 19 14 11.7186 -6.8369 -4.0541 20 1 11.3449 -8.2445 -4.3444 21 1 12.5534 -6.3076 -5.1623 22 1 12.4872 -6.7806 -2.7848 23 7 2.2865 -1.0960 0.0005 24 1 1.9850 -2.0180 0.0006 25 1 -0.3633 0.0004 1.0276 26 1 -0.3634 0.8896 -0.5143 27 1 -0.3633 -0.8903 -0.5134 28 1 5.0229 1.8644 -1.0124 29 1 4.4673 2.5585 0.5295 30 1 5.5672 1.1590 0.5285 31 1 2.8440 -3.5842 0.4995 32 1 2.8251 -2.7773 -1.0871 33 1 3.5393 -4.3994 -0.9219 34 1 5.5865 -4.6606 0.3789 35 1 6.5823 -3.2187 0.6914 36 1 5.8497 -4.3133 -2.0621 37 1 6.8456 -2.8714 -1.7497 38 1 8.4899 -4.2723 -0.5312 39 1 7.4935 -5.7136 -0.8441 40 1 8.0506 -4.4630 -3.3144 41 1 10.0818 -5.3212 -5.8175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754396197.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:18:10 Heat of formation + Delta-G solvation = 14.128233 kcal Electronic energy + Delta-G solvation = -21537.928811 eV Core-core repulsion = 18260.478477 eV Total energy + Delta-G solvation = -3277.450334 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.44850 -40.65770 -37.65259 -36.65133 -34.65706 -34.02181 -33.13148 -31.48110 -30.10245 -28.50705 -27.95594 -26.28170 -24.70180 -22.80607 -22.34807 -21.97358 -20.48911 -19.18497 -18.62400 -17.39022 -17.36083 -17.08670 -16.56366 -15.99790 -15.92194 -15.37537 -15.20300 -14.93811 -14.68021 -14.31522 -14.02912 -13.98843 -13.57360 -13.48721 -13.32163 -13.30399 -13.09276 -13.04405 -12.79679 -12.75624 -12.42354 -12.08238 -11.86597 -11.82617 -11.47529 -11.04631 -10.96775 -10.94167 -9.94960 -9.38698 -9.04645 -7.97909 -5.28142 0.16530 1.45661 1.48536 1.57116 1.65924 1.70008 2.01079 2.18544 2.54595 3.26433 3.35686 3.50177 3.81550 3.87468 3.95581 4.04483 4.08886 4.25658 4.33369 4.49240 4.54054 4.57766 4.60566 4.71157 4.72006 4.74328 4.77902 4.84464 4.96828 5.01115 5.14854 5.25231 5.27646 5.42088 5.46371 5.51821 6.16163 6.24105 6.28370 6.85341 6.96334 7.29537 8.04828 8.27911 9.26056 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032635 B = 0.002910 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.763538 B = 9620.565141 C = 9893.980942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.247 3.753 3 N -0.529 5.529 4 C 0.078 3.922 5 C -0.077 4.077 6 C -0.106 4.106 7 C 0.586 3.414 8 O -0.559 6.559 9 N -0.612 5.612 10 C 0.051 3.949 11 C 0.131 3.869 12 C -0.123 4.123 13 C 0.155 3.845 14 N -0.750 5.750 15 C -0.249 4.249 16 H 0.078 0.922 17 C -0.079 4.079 18 N -0.972 5.972 19 Si 0.979 3.021 20 H -0.282 1.282 21 H -0.295 1.295 22 H -0.269 1.269 23 N -0.542 5.542 24 H 0.439 0.561 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.036 0.964 38 H 0.015 0.985 39 H 0.037 0.963 40 H 0.371 0.629 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.238 6.176 13.400 28.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.017 4.017 3 N -0.251 5.251 4 C -0.056 4.056 5 C -0.135 4.135 6 C -0.221 4.221 7 C 0.375 3.625 8 O -0.438 6.438 9 N -0.344 5.344 10 C -0.091 4.091 11 C 0.008 3.992 12 C -0.162 4.162 13 C 0.028 3.972 14 N -0.393 5.393 15 C -0.380 4.380 16 H 0.096 0.904 17 C -0.271 4.271 18 N -0.623 5.623 19 Si 0.807 3.193 20 H -0.209 1.209 21 H -0.222 1.222 22 H -0.194 1.194 23 N -0.156 5.156 24 H 0.288 0.712 25 H 0.123 0.877 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.033 0.967 39 H 0.055 0.945 40 H 0.203 0.797 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -23.797 7.065 13.563 28.287 hybrid contribution 1.213 -1.362 -0.852 2.013 sum -22.584 5.703 12.711 26.536 Atomic orbital electron populations 1.20566 0.80608 1.06178 1.05675 1.24374 0.97567 0.81078 0.98713 1.70091 1.01502 1.30214 1.23328 1.21311 0.93829 0.90993 0.99485 1.20264 0.92770 0.97483 1.02967 1.20594 0.84656 0.94963 1.21911 1.17202 0.86900 0.81933 0.76447 1.90819 1.27860 1.73288 1.51784 1.47805 1.10786 1.05347 1.70421 1.22434 0.83354 1.00916 1.02348 1.21407 0.86353 0.95439 0.95993 1.21876 0.96956 0.98871 0.98513 1.20706 0.92427 0.96803 0.87239 1.42623 1.30312 1.60286 1.06071 1.19685 1.02109 1.22091 0.94132 0.90360 1.25667 1.03111 1.02911 0.95436 1.69836 1.43364 1.49852 0.99266 0.85064 0.78892 0.78072 0.77269 1.20902 1.22186 1.19364 1.43988 1.04486 1.11450 1.55679 0.71163 0.87738 0.88447 0.87400 0.90959 0.89924 0.90541 0.89094 0.90711 0.87715 0.86662 0.90986 0.91446 0.94496 0.96701 0.94548 0.79725 0.93932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.51 71.23 0.75 0.35 16 2 C 0.25 4.05 8.12 138.19 1.12 5.18 16 3 N -0.53 -13.04 11.20 -175.57 -1.97 -15.00 16 4 C 0.08 2.15 7.14 41.97 0.30 2.45 16 5 C -0.08 -2.03 9.95 71.24 0.71 -1.32 16 6 C -0.11 -2.63 6.63 40.01 0.27 -2.37 16 7 C 0.59 16.94 7.62 86.47 0.66 17.60 16 8 O -0.56 -20.71 14.44 -4.29 -0.06 -20.78 16 9 N -0.61 -13.80 2.87 -851.40 -2.45 -16.25 16 10 C 0.05 0.60 8.81 127.77 1.13 1.72 16 11 C 0.13 3.30 5.33 86.38 0.46 3.77 16 12 C -0.12 -4.15 5.65 30.59 0.17 -3.98 16 13 C 0.16 6.37 6.26 86.38 0.54 6.91 16 14 N -0.75 -40.21 5.60 -343.46 -1.92 -42.14 16 15 C -0.25 -14.39 9.99 84.03 0.84 -13.55 16 16 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 17 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 18 N -0.97 -61.45 13.06 21.65 0.28 -61.17 16 19 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 21 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 N -0.54 -8.41 5.14 -176.12 -0.91 -9.31 16 24 H 0.44 3.42 5.10 -92.71 -0.47 2.95 16 25 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 2.24 6.37 -2.39 -0.02 2.22 16 31 H 0.09 0.49 7.51 -2.39 -0.02 0.47 16 32 H 0.07 0.78 5.65 -2.39 -0.01 0.77 16 33 H 0.10 1.01 8.03 -2.39 -0.02 0.99 16 34 H 0.12 2.11 8.07 -2.39 -0.02 2.09 16 35 H 0.07 2.07 7.51 -2.39 -0.02 2.05 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 40 H 0.37 21.29 7.67 -92.71 -0.71 20.58 16 41 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -81.76 340.05 2.28 -79.48 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.13 Total: 23.55 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 7.41 Total: 12.52 kcal Atomic # 7 Polarization: -136.91 SS G_CDS: -6.96 Total: -143.87 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.06 Total: -20.78 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -81.76 2.28 -79.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754396197.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.610 kcal (2) G-P(sol) polarization free energy of solvation -81.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds