Wall clock time and date at job start Fri Apr 10 2020 17:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00245 * 2 1 4 4 C 1.53004 * 109.47103 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46543 * 65.00514 * 4 3 2 6 6 C 1.36937 * 120.00062 * 269.99440 * 5 4 3 7 7 H 1.07999 * 120.00280 * 141.46514 * 6 5 4 8 8 C 1.38812 * 120.00130 * 321.46280 * 6 5 4 9 9 N 1.31621 * 120.00086 * 338.83014 * 8 6 5 10 10 Si 1.86799 * 120.00260 * 158.82878 * 8 6 5 11 11 H 1.48503 * 109.47013 * 89.99989 * 10 8 6 12 12 H 1.48500 * 109.47337 * 210.00240 * 10 8 6 13 13 H 1.48499 * 109.46946 * 330.00266 * 10 8 6 14 14 C 1.46501 * 119.99991 * 90.00062 * 5 4 3 15 15 C 1.52998 * 109.46891 * 264.70209 * 14 5 4 16 16 N 1.46501 * 109.46891 * 179.97438 * 15 14 5 17 17 C 1.34776 * 119.99954 * 180.02562 * 16 15 14 18 18 O 1.21608 * 120.00273 * 0.02562 * 17 16 15 19 19 C 1.43207 * 120.00231 * 180.27679 * 17 16 15 20 20 C 8.65209 * 100.39122 * 298.20539 * 2 1 3 21 21 C 9.45864 * 108.61660 * 104.69817 * 3 1 2 22 22 C 1.53000 * 117.49919 * 41.47341 * 21 20 19 23 23 C 1.52999 * 117.50031 * 332.80881 * 21 20 19 24 24 H 1.08996 * 109.46860 * 59.99571 * 1 2 3 25 25 H 1.08995 * 109.47238 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46806 * 299.99740 * 1 2 3 27 27 H 1.09006 * 109.46584 * 60.00366 * 3 2 1 28 28 H 1.09000 * 109.47291 * 300.00311 * 3 2 1 29 29 H 1.08993 * 109.47169 * 305.00391 * 4 3 2 30 30 H 1.08998 * 109.47006 * 185.00151 * 4 3 2 31 31 H 0.96995 * 120.00032 * 179.97438 * 9 8 6 32 32 H 1.09009 * 109.46952 * 144.70635 * 14 5 4 33 33 H 1.09000 * 109.47330 * 24.70673 * 14 5 4 34 34 H 1.08993 * 109.47288 * 60.00506 * 15 14 5 35 35 H 1.08998 * 109.47501 * 299.99576 * 15 14 5 36 36 H 0.97003 * 120.00363 * 0.02562 * 16 15 14 37 37 H 1.09000 * 115.54862 * 187.13779 * 21 20 19 38 38 H 1.08996 * 117.49772 * 359.97438 * 22 21 20 39 39 H 1.08999 * 117.50223 * 145.01960 * 22 21 20 40 40 H 1.08998 * 117.50105 * 214.98024 * 23 21 20 41 41 H 1.09004 * 117.49788 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0978 -0.7975 -1.3346 7 1 3.8085 -1.3108 -2.2397 8 6 4.5925 -1.5179 -0.2561 9 7 5.3194 -0.9147 0.6604 10 14 4.2265 -3.3435 -0.1055 11 1 5.2895 -4.1198 -0.7931 12 1 4.1857 -3.7234 1.3295 13 1 2.9135 -3.6385 -0.7333 14 6 4.2883 1.3999 -2.4130 15 6 3.0609 1.4871 -3.3223 16 7 3.3723 2.3235 -4.4840 17 6 2.4345 2.5437 -5.4266 18 8 1.3297 2.0485 -5.3126 19 6 2.7407 3.3565 -6.5653 20 6 2.9896 4.0222 -7.4997 21 6 3.3041 4.8574 -8.6704 22 6 4.1548 4.2308 -9.7771 23 6 4.7586 5.2943 -8.8563 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8464 -0.8899 29 1 3.8509 0.5684 0.8426 30 1 3.9786 2.1764 0.0902 31 1 5.6648 -1.4180 1.4142 32 1 5.1188 0.9596 -2.9650 33 1 4.5641 2.3997 -2.0779 34 1 2.2304 1.9273 -2.7704 35 1 2.7851 0.4873 -3.6575 36 1 4.2534 2.7189 -4.5748 37 1 2.5256 5.5589 -8.9702 38 1 4.4818 3.2004 -9.6381 39 1 3.9362 4.5205 -10.8049 40 1 4.9370 6.2831 -9.2787 41 1 5.4825 4.9637 -8.1115 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755838113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:18:26 Heat of formation + Delta-G solvation = 20.235205 kcal Electronic energy + Delta-G solvation = -21277.919481 eV Core-core repulsion = 17968.441214 eV Total energy + Delta-G solvation = -3309.478267 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -39.40999 -37.89770 -37.25506 -35.76400 -34.18883 -32.82493 -31.36351 -29.48789 -27.58254 -25.60841 -25.02372 -23.74361 -22.83024 -22.19465 -21.24413 -20.37741 -18.58211 -16.88409 -16.67816 -16.01725 -15.60655 -15.34806 -15.13296 -14.94227 -14.59737 -14.04491 -13.83861 -13.67675 -13.27038 -12.88777 -12.71193 -12.25282 -11.97553 -11.94695 -11.78373 -11.56967 -11.17491 -10.87641 -10.76280 -10.70055 -10.60206 -10.39181 -10.19362 -10.00735 -9.96399 -9.90988 -9.71407 -8.88117 -8.66340 -8.38718 -6.56950 -5.73664 -3.31141 1.52468 2.13181 3.13560 3.35813 3.44735 3.51806 3.59992 3.76940 4.06272 4.38457 4.56100 4.58263 4.72622 4.76354 5.20276 5.23769 5.37799 5.45450 5.54492 5.62906 5.66283 5.78352 5.81379 5.85726 5.91418 6.09656 6.17961 6.27247 6.31161 6.53700 6.62775 6.66580 6.70011 6.93037 7.12128 7.62304 7.65023 7.89879 8.10795 8.29581 8.58871 9.21790 9.84908 10.39230 11.28982 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.003418 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.785972 B = 8190.949728 C = 8751.110139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.043 3.957 4 C 0.144 3.856 5 N -0.570 5.570 6 C -0.248 4.248 7 H 0.057 0.943 8 C 0.022 3.978 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.276 1.276 14 C 0.138 3.862 15 C 0.095 3.905 16 N -0.708 5.708 17 C 0.624 3.376 18 O -0.527 6.527 19 C -0.204 4.204 20 C -0.070 4.070 21 C -0.063 4.063 22 C -0.161 4.161 23 C -0.161 4.161 24 H 0.030 0.970 25 H 0.074 0.926 26 H 0.026 0.974 27 H 0.024 0.976 28 H 0.029 0.971 29 H 0.103 0.897 30 H 0.041 0.959 31 H 0.253 0.747 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.400 0.600 37 H 0.134 0.866 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 12.434 -13.053 18.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.036 4.036 4 C 0.017 3.983 5 N -0.289 5.289 6 C -0.377 4.377 7 H 0.075 0.925 8 C -0.178 4.178 9 N -0.534 5.534 10 Si 0.729 3.271 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.202 1.202 14 C 0.010 3.990 15 C -0.030 4.030 16 N -0.359 5.359 17 C 0.410 3.590 18 O -0.405 6.405 19 C -0.207 4.207 20 C -0.072 4.072 21 C -0.080 4.080 22 C -0.198 4.198 23 C -0.198 4.198 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.120 0.880 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.234 0.766 37 H 0.151 0.849 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.239 11.790 -12.734 17.498 hybrid contribution -0.298 -0.450 0.115 0.552 sum -2.538 11.340 -12.619 17.155 Atomic orbital electron populations 1.22641 0.84154 1.01533 0.98482 1.88207 1.16627 1.27526 1.94830 1.23501 0.98796 0.84298 0.96986 1.21070 0.87548 0.96634 0.93025 1.43518 1.75501 1.02887 1.07007 1.18815 1.36367 0.81315 1.01200 0.92532 1.25058 0.95986 0.97846 0.98862 1.69981 1.33664 1.35973 1.13810 0.86375 0.78420 0.85460 0.76877 1.21661 1.21657 1.20155 1.21001 0.93122 0.94913 0.89960 1.22587 1.01457 0.94115 0.84840 1.45997 1.15136 1.51590 1.23141 1.14736 0.84723 0.79495 0.80074 1.90859 1.22149 1.50253 1.77270 1.20910 1.01828 1.00711 0.97300 1.21285 0.98237 0.94102 0.93612 1.18867 0.96110 1.00742 0.92315 1.23119 1.01904 0.99358 0.95371 1.23128 0.93717 1.00174 1.02733 0.95135 0.90703 0.95562 0.95741 0.95249 0.87956 0.94028 0.93685 0.92822 0.94016 0.91963 0.91099 0.76579 0.84859 0.88022 0.87439 0.87453 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -8.01 10.18 -35.23 -0.36 -8.37 16 3 C 0.04 0.89 6.28 37.16 0.23 1.12 16 4 C 0.14 3.29 5.76 -4.04 -0.02 3.26 16 5 N -0.57 -13.68 2.41 -173.24 -0.42 -14.10 16 6 C -0.25 -6.71 8.95 -15.06 -0.13 -6.85 16 7 H 0.06 1.57 7.91 -52.49 -0.42 1.15 16 8 C 0.02 0.62 4.95 -17.43 -0.09 0.53 16 9 N -0.89 -25.46 11.53 55.49 0.64 -24.82 16 10 Si 0.90 22.31 29.60 -169.99 -5.03 17.27 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.14 2.70 5.83 -4.04 -0.02 2.68 16 15 C 0.09 1.76 5.97 -4.04 -0.02 1.74 16 16 N -0.71 -10.96 5.55 -62.77 -0.35 -11.31 16 17 C 0.62 10.68 7.65 -14.33 -0.11 10.58 16 18 O -0.53 -11.14 17.08 5.27 0.09 -11.05 16 19 C -0.20 -2.97 13.61 -38.83 -0.53 -3.50 16 20 C -0.07 -0.84 13.47 -37.12 -0.50 -1.34 16 21 C -0.06 -0.50 6.21 -93.40 -0.58 -1.08 16 22 C -0.16 -1.02 10.21 -26.69 -0.27 -1.29 16 23 C -0.16 -0.97 10.21 -26.69 -0.27 -1.24 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.03 0.58 6.48 -51.93 -0.34 0.25 16 29 H 0.10 2.70 5.58 -51.93 -0.29 2.42 16 30 H 0.04 0.86 7.86 -51.93 -0.41 0.45 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 32 H 0.05 1.06 8.08 -51.92 -0.42 0.64 16 33 H 0.04 0.73 7.83 -51.93 -0.41 0.33 16 34 H 0.06 1.23 6.48 -51.93 -0.34 0.89 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.40 4.96 8.44 -40.82 -0.34 4.61 16 37 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -32.80 356.19 -7.59 -40.39 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.32 Total: 0.36 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -1.21 Total: 6.26 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.13 Total: -50.23 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.27 Total: -19.41 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.80 -7.59 -40.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755838113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.622 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds