Wall clock time and date at job start Fri Apr 10 2020 17:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00245 * 2 1 4 4 C 1.53004 * 109.47103 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46543 * 65.00514 * 4 3 2 6 6 C 1.36937 * 120.00062 * 269.99440 * 5 4 3 7 7 H 1.07999 * 120.00280 * 141.46514 * 6 5 4 8 8 C 1.38812 * 120.00130 * 321.46280 * 6 5 4 9 9 N 1.31621 * 120.00086 * 338.83014 * 8 6 5 10 10 Si 1.86799 * 120.00260 * 158.82878 * 8 6 5 11 11 H 1.48503 * 109.47013 * 89.99989 * 10 8 6 12 12 H 1.48500 * 109.47337 * 210.00240 * 10 8 6 13 13 H 1.48499 * 109.46946 * 330.00266 * 10 8 6 14 14 C 1.46501 * 119.99991 * 90.00062 * 5 4 3 15 15 C 1.52998 * 109.46891 * 264.70209 * 14 5 4 16 16 N 1.46501 * 109.46891 * 179.97438 * 15 14 5 17 17 C 1.34776 * 119.99954 * 180.02562 * 16 15 14 18 18 O 1.21608 * 120.00273 * 0.02562 * 17 16 15 19 19 C 1.43207 * 120.00231 * 180.27679 * 17 16 15 20 20 C 8.65209 * 100.39122 * 298.20539 * 2 1 3 21 21 C 9.45864 * 108.61660 * 104.69817 * 3 1 2 22 22 C 1.53000 * 117.49919 * 41.47341 * 21 20 19 23 23 C 1.52999 * 117.50031 * 332.80881 * 21 20 19 24 24 H 1.08996 * 109.46860 * 59.99571 * 1 2 3 25 25 H 1.08995 * 109.47238 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46806 * 299.99740 * 1 2 3 27 27 H 1.09006 * 109.46584 * 60.00366 * 3 2 1 28 28 H 1.09000 * 109.47291 * 300.00311 * 3 2 1 29 29 H 1.08993 * 109.47169 * 305.00391 * 4 3 2 30 30 H 1.08998 * 109.47006 * 185.00151 * 4 3 2 31 31 H 0.96995 * 120.00032 * 179.97438 * 9 8 6 32 32 H 1.09009 * 109.46952 * 144.70635 * 14 5 4 33 33 H 1.09000 * 109.47330 * 24.70673 * 14 5 4 34 34 H 1.08993 * 109.47288 * 60.00506 * 15 14 5 35 35 H 1.08998 * 109.47501 * 299.99576 * 15 14 5 36 36 H 0.97003 * 120.00363 * 0.02562 * 16 15 14 37 37 H 1.09000 * 115.54862 * 187.13779 * 21 20 19 38 38 H 1.08996 * 117.49772 * 359.97438 * 22 21 20 39 39 H 1.08999 * 117.50223 * 145.01960 * 22 21 20 40 40 H 1.08998 * 117.50105 * 214.98024 * 23 21 20 41 41 H 1.09004 * 117.49788 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0978 -0.7975 -1.3346 7 1 3.8085 -1.3108 -2.2397 8 6 4.5925 -1.5179 -0.2561 9 7 5.3194 -0.9147 0.6604 10 14 4.2265 -3.3435 -0.1055 11 1 5.2895 -4.1198 -0.7931 12 1 4.1857 -3.7234 1.3295 13 1 2.9135 -3.6385 -0.7333 14 6 4.2883 1.3999 -2.4130 15 6 3.0609 1.4871 -3.3223 16 7 3.3723 2.3235 -4.4840 17 6 2.4345 2.5437 -5.4266 18 8 1.3297 2.0485 -5.3126 19 6 2.7407 3.3565 -6.5653 20 6 2.9896 4.0222 -7.4997 21 6 3.3041 4.8574 -8.6704 22 6 4.1548 4.2308 -9.7771 23 6 4.7586 5.2943 -8.8563 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8464 -0.8899 29 1 3.8509 0.5684 0.8426 30 1 3.9786 2.1764 0.0902 31 1 5.6648 -1.4180 1.4142 32 1 5.1188 0.9596 -2.9650 33 1 4.5641 2.3997 -2.0779 34 1 2.2304 1.9273 -2.7704 35 1 2.7851 0.4873 -3.6575 36 1 4.2534 2.7189 -4.5748 37 1 2.5256 5.5589 -8.9702 38 1 4.4818 3.2004 -9.6381 39 1 3.9362 4.5205 -10.8049 40 1 4.9370 6.2831 -9.2787 41 1 5.4825 4.9637 -8.1115 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755838113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:18:25 Heat of formation + Delta-G solvation = -1.404000 kcal Electronic energy + Delta-G solvation = -21278.857827 eV Core-core repulsion = 17968.441214 eV Total energy + Delta-G solvation = -3310.416613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.81098 -38.93516 -38.48816 -37.44366 -35.79071 -33.91876 -33.27030 -31.09319 -29.27883 -27.17168 -26.37983 -25.21294 -23.52362 -23.27772 -22.59875 -22.15641 -19.87164 -18.65162 -17.61810 -17.49448 -17.12615 -16.77939 -16.60195 -16.37128 -15.92989 -15.64619 -15.45593 -15.16321 -15.01678 -14.37879 -13.67144 -13.52137 -13.42244 -13.12809 -13.00792 -12.71172 -12.49605 -12.44627 -12.40122 -12.38679 -12.31089 -11.96381 -11.75610 -11.60065 -11.53752 -11.10576 -10.74450 -10.47279 -10.39987 -10.14981 -8.54743 -7.79619 -5.39847 0.39146 1.12273 1.45181 1.49330 1.59935 1.95128 2.31116 2.56473 3.01168 3.11835 3.19350 3.34547 3.75411 3.83837 4.00787 4.04518 4.19325 4.25680 4.39912 4.47286 4.51100 4.56131 4.69705 4.70830 4.79119 4.80977 4.88778 4.95226 4.98334 5.06838 5.10438 5.12179 5.23617 5.37134 5.71266 5.78399 6.10923 6.36234 6.45840 6.64428 6.99950 7.22407 7.88169 8.37947 9.18473 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.003418 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.785972 B = 8190.949728 C = 8751.110139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.050 3.950 4 C 0.142 3.858 5 N -0.585 5.585 6 C -0.248 4.248 7 H 0.042 0.958 8 C -0.019 4.019 9 N -0.914 5.914 10 Si 0.947 3.053 11 H -0.283 1.283 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.143 3.857 15 C 0.117 3.883 16 N -0.694 5.694 17 C 0.628 3.372 18 O -0.578 6.578 19 C -0.265 4.265 20 C -0.022 4.022 21 C -0.089 4.089 22 C -0.154 4.154 23 C -0.147 4.147 24 H 0.035 0.965 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.250 0.750 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.418 0.582 37 H 0.158 0.842 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.420 14.410 -14.774 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.029 4.029 4 C 0.016 3.984 5 N -0.306 5.306 6 C -0.378 4.378 7 H 0.060 0.940 8 C -0.217 4.217 9 N -0.559 5.559 10 Si 0.776 3.224 11 H -0.210 1.210 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.016 3.984 15 C -0.009 4.009 16 N -0.345 5.345 17 C 0.416 3.584 18 O -0.459 6.459 19 C -0.268 4.268 20 C -0.024 4.024 21 C -0.107 4.107 22 C -0.190 4.190 23 C -0.183 4.183 24 H 0.053 0.947 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.255 0.745 37 H 0.175 0.825 38 H 0.109 0.891 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.952 13.796 -14.474 20.091 hybrid contribution -0.376 -0.958 0.518 1.152 sum -2.328 12.838 -13.955 19.105 Atomic orbital electron populations 1.22803 0.81786 1.02591 0.99854 1.88131 1.19383 1.28788 1.95162 1.23364 0.97107 0.84003 0.98379 1.21032 0.89345 0.96703 0.91354 1.43668 1.76012 1.02444 1.08442 1.18862 1.35256 0.83122 1.00607 0.94001 1.25556 0.96482 1.00620 0.99025 1.70070 1.34796 1.36798 1.14192 0.85629 0.77913 0.82403 0.76489 1.20988 1.21794 1.20778 1.21027 0.93142 0.95545 0.88685 1.22081 1.00582 0.92885 0.85383 1.45737 1.15856 1.50833 1.22037 1.14960 0.83947 0.78910 0.80572 1.90818 1.24136 1.52435 1.78527 1.20421 1.04974 1.02995 0.98396 1.22154 0.95391 0.92037 0.92852 1.19325 0.98231 1.01549 0.91587 1.23257 1.00510 0.99092 0.96183 1.23276 0.91563 1.01413 1.02087 0.94653 0.89946 0.93130 0.93233 0.94666 0.91430 0.91958 0.94057 0.93033 0.91222 0.92916 0.94252 0.74541 0.82509 0.89069 0.84938 0.84821 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.40 -17.84 10.18 -148.98 -1.52 -19.36 16 3 C 0.05 2.02 6.28 71.98 0.45 2.47 16 4 C 0.14 6.45 5.76 86.38 0.50 6.95 16 5 N -0.59 -28.25 2.41 -702.00 -1.69 -29.94 16 6 C -0.25 -13.68 8.95 84.03 0.75 -12.93 16 7 H 0.04 2.39 7.91 -2.91 -0.02 2.37 16 8 C -0.02 -1.09 4.95 84.86 0.42 -0.67 16 9 N -0.91 -52.95 11.53 21.65 0.25 -52.70 16 10 Si 0.95 46.54 29.60 68.60 2.03 48.57 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 13 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 14 C 0.14 5.53 5.83 86.38 0.50 6.04 16 15 C 0.12 4.39 5.97 86.38 0.52 4.90 16 16 N -0.69 -21.46 5.55 -470.75 -2.61 -24.07 16 17 C 0.63 21.92 7.65 85.49 0.65 22.57 16 18 O -0.58 -25.28 17.08 -4.06 -0.07 -25.35 16 19 C -0.26 -7.61 13.61 30.02 0.41 -7.20 16 20 C -0.02 -0.49 13.47 31.13 0.42 -0.07 16 21 C -0.09 -1.14 6.21 -12.60 -0.08 -1.22 16 22 C -0.15 -1.43 10.21 30.62 0.31 -1.11 16 23 C -0.15 -1.23 10.21 30.62 0.31 -0.92 16 24 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 25 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.04 1.37 6.48 -2.39 -0.02 1.35 16 29 H 0.07 3.62 5.58 -2.39 -0.01 3.61 16 30 H 0.06 2.50 7.86 -2.39 -0.02 2.49 16 31 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 32 H 0.05 2.01 8.08 -2.38 -0.02 1.99 16 33 H 0.07 2.32 7.83 -2.39 -0.02 2.30 16 34 H 0.05 2.10 6.48 -2.39 -0.02 2.08 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.42 9.96 8.44 -92.71 -0.78 9.18 16 37 H 0.16 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.13 0.60 8.14 -2.39 -0.02 0.59 16 40 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -72.93 356.19 3.06 -69.86 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.25 Total: 12.02 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 6.42 Total: 20.96 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -4.05 Total: -106.71 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -1.59 Total: -44.71 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -72.93 3.06 -69.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755838113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.458 kcal (2) G-P(sol) polarization free energy of solvation -72.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds