Wall clock time and date at job start Fri Apr 10 2020 17:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46506 * 109.47109 * 2 1 4 4 N 1.40065 * 126.06109 * 89.97308 * 3 2 1 5 5 C 1.30838 * 108.36078 * 180.02562 * 4 3 2 6 6 C 1.50706 * 125.82900 * 180.02562 * 5 4 3 7 7 C 1.40230 * 108.34614 * 0.02562 * 5 4 3 8 8 N 1.40844 * 126.07803 * 179.97438 * 7 5 4 9 9 C 1.34772 * 120.00227 * 318.35586 * 8 7 5 10 10 O 1.21602 * 120.00006 * 359.02759 * 9 8 7 11 11 N 1.34777 * 120.00254 * 179.01791 * 9 8 7 12 12 C 1.46496 * 120.00123 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.46798 * 35.00611 * 12 11 9 14 14 C 1.53002 * 109.47516 * 275.00260 * 12 11 9 15 15 C 1.50698 * 109.47067 * 155.00210 * 12 11 9 16 16 H 1.08000 * 120.00223 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00389 * 180.02562 * 15 12 11 18 18 N 1.31508 * 120.00674 * 179.72813 * 17 15 12 19 19 Si 1.86807 * 119.99563 * 0.02562 * 17 15 12 20 20 H 1.48496 * 109.47146 * 269.72478 * 19 17 15 21 21 H 1.48500 * 109.47132 * 29.72230 * 19 17 15 22 22 H 1.48497 * 109.46953 * 149.72423 * 19 17 15 23 23 C 1.35731 * 107.84581 * 0.22476 * 7 5 4 24 24 C 1.50707 * 126.21658 * 179.77255 * 23 7 5 25 25 H 1.08999 * 109.46656 * 300.00643 * 1 2 3 26 26 H 1.09001 * 109.46670 * 60.00016 * 1 2 3 27 27 H 1.08996 * 109.46771 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47387 * 239.99485 * 2 1 3 29 29 H 1.09001 * 109.46732 * 119.99198 * 2 1 3 30 30 H 1.09001 * 109.47518 * 278.50383 * 6 5 4 31 31 H 1.09001 * 109.46616 * 38.49907 * 6 5 4 32 32 H 1.08997 * 109.47113 * 158.50138 * 6 5 4 33 33 H 0.97007 * 119.99571 * 138.35692 * 8 7 5 34 34 H 0.97000 * 119.99981 * 0.02562 * 11 9 8 35 35 H 1.09004 * 109.46782 * 59.99880 * 14 12 11 36 36 H 1.08995 * 109.47209 * 179.97438 * 14 12 11 37 37 H 1.08993 * 109.47086 * 300.00653 * 14 12 11 38 38 H 0.96992 * 120.00615 * 180.27786 * 18 17 15 39 39 H 1.09000 * 109.46866 * 89.99756 * 24 23 7 40 40 H 1.09001 * 109.47197 * 209.99824 * 24 23 7 41 41 H 1.08996 * 109.47213 * 330.00037 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2927 2.1588 1.1323 5 6 2.7079 3.3341 0.7345 6 6 3.1118 4.4767 1.6303 7 6 2.7128 3.3491 -0.6677 8 7 3.0945 4.4314 -1.4843 9 6 2.7141 5.6840 -1.1641 10 8 2.0265 5.8779 -0.1801 11 7 3.0958 6.7219 -1.9345 12 6 2.6828 8.0836 -1.5862 13 1 2.6543 8.1883 -0.5016 14 6 1.2919 8.3577 -2.1618 15 6 3.6673 9.0695 -2.1604 16 1 4.5156 8.7171 -2.7284 17 6 3.4851 10.4216 -1.9607 18 7 4.3472 11.2817 -2.4572 19 14 2.0183 11.0312 -0.9776 20 1 0.8738 11.2705 -1.8931 21 1 1.6396 10.0096 0.0314 22 1 2.3753 12.2979 -0.2898 23 6 2.2792 2.1371 -1.0982 24 6 2.1197 1.7068 -2.5337 25 1 -0.3632 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 2.2208 5.0056 1.9687 31 1 3.6532 4.0882 2.4929 32 1 3.7534 5.1626 1.0773 33 1 3.6312 4.2751 -2.2771 34 1 3.6441 6.5673 -2.7196 35 1 0.5799 7.6446 -1.7464 36 1 0.9845 9.3707 -1.9022 37 1 1.3204 8.2528 -3.2463 38 1 4.2212 12.2326 -2.3133 39 1 3.0494 1.2582 -2.8839 40 1 1.3138 0.9766 -2.6068 41 1 1.8808 2.5744 -3.1487 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121066406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:19:51 Heat of formation + Delta-G solvation = 47.037057 kcal Electronic energy + Delta-G solvation = -22331.219551 eV Core-core repulsion = 19055.196251 eV Total energy + Delta-G solvation = -3276.023300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.35174 -39.20340 -35.55757 -34.63671 -34.03034 -32.34578 -31.96200 -30.36845 -29.35474 -27.24172 -26.55606 -25.12963 -23.23597 -21.92821 -20.18508 -19.88351 -19.26774 -18.01394 -17.05789 -16.28927 -15.91141 -15.37870 -15.06085 -14.56700 -14.32244 -14.10620 -13.59726 -13.30349 -13.28132 -13.16130 -12.94784 -12.82781 -12.29322 -12.17134 -12.14091 -11.88969 -11.81392 -11.70762 -11.53199 -11.21455 -10.75841 -10.66474 -10.15004 -9.75444 -9.68521 -9.33628 -9.17366 -8.89308 -8.72160 -8.13714 -7.54949 -6.17817 -4.19928 1.82914 2.39496 2.83853 3.27001 3.36943 3.39236 3.44877 3.91041 4.35196 4.38695 4.57358 4.73994 4.86380 4.93955 4.95178 5.05624 5.17587 5.28959 5.29490 5.46112 5.56957 5.63678 5.81884 5.88846 6.10335 6.26099 6.27904 6.36973 6.43097 6.62518 6.69613 6.87003 6.99962 7.13154 7.21575 7.39465 7.56676 7.61117 7.87142 8.33929 8.72779 8.83995 9.26230 9.44773 10.94420 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.033023 B = 0.003909 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.690266 B = 7161.166481 C = 7342.575533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.138 3.862 3 N -0.375 5.375 4 N -0.294 5.294 5 C 0.098 3.902 6 C -0.055 4.055 7 C 0.032 3.968 8 N -0.671 5.671 9 C 0.696 3.304 10 O -0.583 6.583 11 N -0.716 5.716 12 C 0.256 3.744 13 H 0.049 0.951 14 C -0.161 4.161 15 C -0.533 4.533 16 H 0.080 0.920 17 C 0.078 3.922 18 N -0.894 5.894 19 Si 0.885 3.115 20 H -0.277 1.277 21 H -0.260 1.260 22 H -0.295 1.295 23 C 0.049 3.951 24 C -0.086 4.086 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.399 0.601 34 H 0.391 0.609 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.267 0.733 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 -22.141 0.177 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.016 3.984 3 N -0.161 5.161 4 N -0.117 5.117 5 C -0.070 4.070 6 C -0.113 4.113 7 C -0.073 4.073 8 N -0.322 5.322 9 C 0.396 3.604 10 O -0.461 6.461 11 N -0.368 5.368 12 C 0.152 3.848 13 H 0.067 0.933 14 C -0.220 4.220 15 C -0.572 4.572 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.531 5.531 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.185 1.185 22 H -0.222 1.222 23 C -0.079 4.079 24 C -0.144 4.144 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.233 0.767 34 H 0.223 0.777 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.193 -22.546 2.051 23.227 hybrid contribution -0.130 0.795 -1.143 1.398 sum -5.323 -21.751 0.908 22.411 Atomic orbital electron populations 1.22214 0.94607 1.02718 1.03438 1.21530 0.94967 0.77891 1.03991 1.48233 1.53374 1.11611 1.02859 1.77268 1.23274 1.03556 1.07596 1.22364 0.97969 0.93720 0.92916 1.20159 1.02205 0.92617 0.96365 1.16845 1.11931 0.88614 0.89911 1.41962 1.57346 1.03816 1.29087 1.16073 0.80681 0.80005 0.83657 1.90893 1.42952 1.83814 1.28432 1.45388 1.55517 1.06580 1.29337 1.18965 0.91630 0.77245 0.96992 0.93295 1.22469 0.99053 0.99450 1.01003 1.21054 1.10117 0.90245 1.35735 0.90240 1.24816 0.96321 0.96468 0.94920 1.69861 1.35999 1.02437 1.44810 0.86879 0.82545 0.78168 0.80913 1.20397 1.18511 1.22230 1.20649 1.03209 0.93241 0.90784 1.20355 1.02471 1.02603 0.88964 0.91542 0.92033 0.90720 0.89265 0.88905 0.89715 0.92499 0.90673 0.76685 0.77651 0.94512 0.93583 0.92996 0.92318 0.90550 0.91177 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 2 C 0.14 1.13 6.81 -4.04 -0.03 1.11 16 3 N -0.38 -4.84 3.64 -56.82 -0.21 -5.05 16 4 N -0.29 -4.77 12.57 33.74 0.42 -4.35 16 5 C 0.10 1.69 6.83 -82.26 -0.56 1.12 16 6 C -0.05 -0.93 8.52 36.01 0.31 -0.62 16 7 C 0.03 0.51 6.38 -83.86 -0.53 -0.03 16 8 N -0.67 -10.22 5.41 -14.39 -0.08 -10.29 16 9 C 0.70 13.42 7.56 -86.92 -0.66 12.76 16 10 O -0.58 -13.21 12.40 5.28 0.07 -13.14 16 11 N -0.72 -14.14 5.07 -59.81 -0.30 -14.44 16 12 C 0.26 6.08 2.15 -69.08 -0.15 5.93 16 13 H 0.05 1.29 6.63 -51.93 -0.34 0.94 16 14 C -0.16 -3.64 8.96 37.16 0.33 -3.31 16 15 C -0.53 -14.34 9.31 -34.44 -0.32 -14.66 16 16 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 17 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 18 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 19 Si 0.89 21.84 24.37 -169.99 -4.14 17.70 16 20 H -0.28 -6.63 6.88 56.52 0.39 -6.24 16 21 H -0.26 -6.39 6.52 56.52 0.37 -6.03 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 C 0.05 0.63 6.98 -81.71 -0.57 0.06 16 24 C -0.09 -0.71 9.87 36.01 0.36 -0.36 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.50 7.71 -51.93 -0.40 0.10 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.55 7.54 -51.93 -0.39 1.16 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.37 6.66 -51.93 -0.35 1.02 16 33 H 0.40 4.70 8.84 -40.82 -0.36 4.34 16 34 H 0.39 6.70 8.55 -40.82 -0.35 6.35 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 1.07 3.28 -51.93 -0.17 0.90 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.47 7.77 -51.93 -0.40 0.07 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 333.52 15.07 5.03 5.03 Total: -1.00 -33.90 333.52 -6.16 -40.06 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.17 Total: 7.00 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -1.54 Total: 3.19 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.61 Total: -59.82 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.07 Total: -13.14 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.14 Total: 17.70 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.90 -6.16 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121066406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.095 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds